Wall clock time and date at job start Tue Mar 31 2020 14:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47820 * 2 1 4 4 C 1.52997 * 109.47394 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47222 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47222 * 179.97438 * 5 4 3 7 7 N 1.46493 * 109.47377 * 180.02562 * 6 5 4 8 8 C 1.46505 * 119.99899 * 90.00269 * 7 6 5 9 9 C 1.50703 * 109.47064 * 270.00279 * 8 7 6 10 10 C 1.34515 * 125.79060 * 89.99944 * 9 8 7 11 11 C 1.41380 * 106.83832 * 179.97438 * 10 9 8 12 12 C 1.34506 * 106.84493 * 359.97438 * 11 10 9 13 13 O 1.34306 * 125.78568 * 269.69282 * 9 8 7 14 14 C 1.34773 * 120.00646 * 270.00434 * 7 6 5 15 15 O 1.21287 * 119.99667 * 359.97438 * 14 7 6 16 16 C 1.50702 * 120.00755 * 179.97438 * 14 7 6 17 17 S 1.80996 * 109.47335 * 180.02562 * 16 14 7 18 18 C 1.76203 * 99.99911 * 179.97438 * 17 16 14 19 19 H 1.08000 * 119.99861 * 359.97438 * 18 17 16 20 20 C 1.38800 * 119.99867 * 180.02562 * 18 17 16 21 21 N 1.31630 * 120.00067 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99827 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47305 * 359.97438 * 22 20 18 24 24 H 1.48507 * 109.47273 * 119.99663 * 22 20 18 25 25 H 1.48498 * 109.47164 * 239.99550 * 22 20 18 26 26 H 1.09006 * 109.46786 * 300.00130 * 1 2 3 27 27 H 1.09004 * 109.46762 * 59.99226 * 1 2 3 28 28 H 1.08993 * 109.47529 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46957 * 239.99352 * 2 1 3 30 30 H 1.09004 * 109.46762 * 120.00773 * 2 1 3 31 31 H 1.09006 * 109.47047 * 60.00030 * 3 2 1 32 32 H 1.08996 * 109.47017 * 300.00528 * 3 2 1 33 33 H 1.09006 * 109.46817 * 60.00112 * 4 3 2 34 34 H 1.08994 * 109.47199 * 300.00626 * 4 3 2 35 35 H 1.09006 * 109.46906 * 60.00445 * 5 4 3 36 36 H 1.08996 * 109.47330 * 300.00837 * 5 4 3 37 37 H 1.09006 * 109.46817 * 60.00390 * 6 5 4 38 38 H 1.08996 * 109.47652 * 300.00640 * 6 5 4 39 39 H 1.09002 * 109.47068 * 30.00248 * 8 7 6 40 40 H 1.09001 * 109.47372 * 150.00336 * 8 7 6 41 41 H 1.07996 * 126.58016 * 0.03378 * 10 9 8 42 42 H 1.08006 * 126.57610 * 179.97438 * 11 10 9 43 43 H 1.08005 * 125.79499 * 180.02562 * 12 11 10 44 44 H 1.09004 * 109.46469 * 300.00239 * 16 14 7 45 45 H 1.09002 * 109.46873 * 59.99721 * 16 14 7 46 46 H 0.96996 * 120.00116 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 3.5701 1.4423 0.0006 5 6 4.0803 2.8847 0.0000 6 6 5.6102 2.8846 0.0013 7 7 6.0987 4.2657 0.0013 8 6 6.3420 4.9566 1.2701 9 6 5.0858 5.6672 1.7039 10 6 4.1146 5.1474 2.4760 11 6 3.1331 6.1530 2.6318 12 6 3.5634 7.2273 1.9463 13 8 4.7489 6.9289 1.3901 14 6 6.3244 4.9008 -1.1658 15 8 6.1234 4.3287 -2.2162 16 6 6.8263 6.3217 -1.1658 17 16 7.0282 6.8903 -2.8723 18 6 7.6062 8.5294 -2.5823 19 1 7.7311 8.8869 -1.5708 20 6 7.9000 9.3614 -3.6537 21 7 7.7473 8.9258 -4.8864 22 14 8.5135 11.0988 -3.3463 23 1 8.5987 11.3421 -1.8838 24 1 9.8578 11.2642 -3.9552 25 1 7.5711 12.0715 -3.9554 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5140 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5140 -0.8900 30 1 1.8933 -0.5140 0.8900 31 1 1.6769 1.9563 0.8900 32 1 1.6768 1.9562 -0.8899 33 1 3.9338 0.9282 -0.8892 34 1 3.9331 0.9285 0.8908 35 1 3.7166 3.3991 0.8896 36 1 3.7173 3.3981 -0.8903 37 1 5.9743 2.3701 -0.8881 38 1 5.9729 2.3713 0.8918 39 1 6.6294 4.2301 2.0301 40 1 7.1440 5.6832 1.1402 41 1 4.0899 4.1532 2.8968 42 1 2.2141 6.0738 3.1936 43 1 3.0454 8.1711 1.8607 44 1 6.1076 6.9609 -0.6529 45 1 7.7860 6.3680 -0.6510 46 1 7.9530 9.5071 -5.6352 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890936650.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:57 Heat of formation + Delta-G solvation = -65.037646 kcal Electronic energy + Delta-G solvation = -25364.281674 eV Core-core repulsion = 21766.382478 eV Total energy + Delta-G solvation = -3597.899196 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.47430 -40.93242 -37.70903 -36.64115 -34.60583 -33.90626 -33.87537 -31.38031 -31.13431 -28.73284 -27.67715 -26.76843 -24.87646 -22.65516 -22.32375 -21.86182 -21.70981 -20.55390 -19.62793 -18.40302 -18.14043 -17.34588 -16.90384 -16.86045 -16.57205 -16.51957 -15.87507 -15.43567 -15.23458 -14.86874 -14.55390 -14.55045 -14.36707 -13.82882 -13.72586 -13.65566 -13.57459 -13.43702 -13.27348 -13.17596 -12.92853 -12.81763 -12.63207 -12.42263 -12.25473 -11.84441 -11.74614 -11.61667 -11.59306 -11.35522 -11.17534 -10.92190 -10.73458 -10.31051 -9.91614 -9.38368 -8.69740 -8.36550 -6.14945 0.71809 1.24904 1.39478 1.43597 1.49174 1.56022 1.73003 2.15401 2.23032 2.25831 2.97391 3.23372 3.63858 3.74786 3.84306 3.99011 4.00705 4.15281 4.17079 4.20251 4.23807 4.31015 4.40267 4.45959 4.49870 4.53487 4.55962 4.69472 4.85538 4.86701 4.92186 4.95536 5.02764 5.07050 5.12315 5.21949 5.22602 5.25531 5.38186 5.39861 5.48202 5.50433 5.56555 5.68513 6.13511 6.18580 6.28523 7.04500 7.07761 8.73149 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013628 B = 0.003085 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.058289 B = 9073.029239 C =10140.419904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C -0.118 4.118 4 C -0.109 4.109 5 C -0.132 4.132 6 C 0.114 3.886 7 N -0.600 5.600 8 C 0.183 3.817 9 C -0.057 4.057 10 C -0.185 4.185 11 C -0.222 4.222 12 C -0.052 4.052 13 O -0.200 6.200 14 C 0.534 3.466 15 O -0.558 6.558 16 C -0.125 4.125 17 S -0.150 6.150 18 C -0.542 4.542 19 H 0.079 0.921 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 0.999 3.001 23 H -0.258 1.258 24 H -0.271 1.271 25 H -0.273 1.273 26 H 0.057 0.943 27 H 0.045 0.955 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.040 0.960 33 H 0.053 0.947 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.021 0.979 37 H 0.063 0.937 38 H 0.122 0.878 39 H 0.159 0.841 40 H 0.095 0.905 41 H 0.173 0.827 42 H 0.169 0.831 43 H 0.219 0.781 44 H 0.097 0.903 45 H 0.107 0.893 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.997 -13.744 21.555 27.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.160 4.160 3 C -0.156 4.156 4 C -0.147 4.147 5 C -0.170 4.170 6 C -0.008 4.008 7 N -0.333 5.333 8 C 0.061 3.939 9 C -0.108 4.108 10 C -0.205 4.205 11 C -0.241 4.241 12 C -0.119 4.119 13 O -0.097 6.097 14 C 0.322 3.678 15 O -0.435 6.435 16 C -0.276 4.276 17 S 0.078 5.922 18 C -0.690 4.690 19 H 0.097 0.903 20 C -0.191 4.191 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.182 1.182 24 H -0.196 1.196 25 H -0.198 1.198 26 H 0.076 0.924 27 H 0.064 0.936 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.107 0.893 35 H 0.098 0.902 36 H 0.040 0.960 37 H 0.082 0.918 38 H 0.140 0.860 39 H 0.176 0.824 40 H 0.114 0.886 41 H 0.191 0.809 42 H 0.187 0.813 43 H 0.236 0.764 44 H 0.115 0.885 45 H 0.125 0.875 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.080 -14.399 19.652 26.366 hybrid contribution 0.151 1.914 0.640 2.024 sum -9.929 -12.485 20.292 25.812 Atomic orbital electron populations 1.21794 0.95797 1.01939 1.01650 1.21524 0.95991 0.96192 1.02309 1.21584 0.95329 0.97255 1.01430 1.21478 0.95462 0.94947 1.02786 1.21985 0.95358 0.98175 1.01508 1.21753 0.94155 0.80597 1.04256 1.48025 1.65886 1.14654 1.04729 1.20356 0.90828 0.96733 0.86022 1.23244 1.01189 0.83583 1.02765 1.21864 0.94065 1.01817 1.02723 1.22154 1.02853 0.93609 1.05470 1.24704 0.85666 1.02641 0.98902 1.84092 1.34922 1.30155 1.60511 1.20134 0.76507 0.87309 0.83850 1.90678 1.52451 1.67841 1.32554 1.23391 1.04745 0.96216 1.03213 1.85502 1.86892 1.15581 1.04254 1.23173 1.51235 0.98621 0.96004 0.90291 1.26136 0.95012 1.04041 0.93949 1.70188 1.46859 1.38485 0.99219 0.84905 0.77971 0.76025 0.79044 1.18153 1.19635 1.19842 0.92401 0.93584 0.92047 0.92512 0.90829 0.91516 0.94094 0.92799 0.89349 0.90170 0.95953 0.91823 0.85971 0.82390 0.88648 0.80930 0.81332 0.76448 0.88451 0.87485 0.91944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.91 71.98 0.71 -1.33 16 2 C -0.12 -1.71 5.93 30.59 0.18 -1.53 16 3 C -0.12 -1.98 5.21 30.59 0.16 -1.82 16 4 C -0.11 -1.82 5.21 30.59 0.16 -1.66 16 5 C -0.13 -2.88 5.54 30.59 0.17 -2.71 16 6 C 0.11 2.47 5.45 86.38 0.47 2.95 16 7 N -0.60 -16.25 2.46 -826.15 -2.03 -18.28 16 8 C 0.18 3.62 5.78 85.63 0.50 4.11 16 9 C -0.06 -1.30 6.73 24.83 0.17 -1.13 16 10 C -0.18 -3.36 8.87 22.19 0.20 -3.17 16 11 C -0.22 -4.14 10.91 22.19 0.24 -3.89 16 12 C -0.05 -1.14 12.09 66.97 0.81 -0.33 16 13 O -0.20 -5.67 9.55 -2.58 -0.02 -5.70 16 14 C 0.53 21.19 7.69 87.66 0.67 21.86 16 15 O -0.56 -27.06 15.44 -3.05 -0.05 -27.11 16 16 C -0.12 -5.38 4.71 71.24 0.34 -5.04 16 17 S -0.15 -8.65 20.57 -56.49 -1.16 -9.82 16 18 C -0.54 -31.98 9.50 67.95 0.65 -31.34 16 19 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 20 C 0.01 0.77 5.49 84.86 0.47 1.24 16 21 N -0.91 -56.97 13.22 21.65 0.29 -56.68 16 22 Si 1.00 44.55 29.55 68.60 2.03 46.57 16 23 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 24 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 25 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 26 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 27 H 0.04 0.67 8.14 -2.38 -0.02 0.66 16 28 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 30 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 32 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 34 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.08 1.56 5.60 -2.38 -0.01 1.55 16 36 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.06 1.70 7.42 -2.38 -0.02 1.69 16 38 H 0.12 1.51 7.89 -2.39 -0.02 1.49 16 39 H 0.16 1.58 7.89 -2.39 -0.02 1.56 16 40 H 0.10 1.99 6.44 -2.39 -0.02 1.97 16 41 H 0.17 2.08 7.81 -2.91 -0.02 2.06 16 42 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 43 H 0.22 3.53 8.06 -2.91 -0.02 3.51 16 44 H 0.10 4.14 6.93 -2.39 -0.02 4.12 16 45 H 0.11 4.15 7.40 -2.39 -0.02 4.13 16 46 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -81.10 392.19 5.88 -75.22 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: 0.95 Total: 19.60 kcal Atomic # 6 Polarization: -29.68 SS G_CDS: 5.89 Total: -23.79 kcal Atomic # 7 Polarization: -73.22 SS G_CDS: -1.74 Total: -74.97 kcal Atomic # 8 Polarization: -32.74 SS G_CDS: -0.07 Total: -32.81 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Atomic # 16 Polarization: -8.65 SS G_CDS: -1.16 Total: -9.82 kcal Total: -81.10 5.88 -75.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890936650.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.177 kcal (2) G-P(sol) polarization free energy of solvation -81.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds