Wall clock time and date at job start Tue Mar 31 2020 14:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38682 * 120.78431 * 2 1 4 4 C 1.38179 * 119.15761 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.61265 * 180.02562 * 4 3 2 6 6 N 1.31888 * 120.76887 * 0.02562 * 4 3 2 7 7 C 1.31850 * 121.72511 * 359.97438 * 6 4 3 8 8 C 1.50704 * 119.61541 * 179.97438 * 7 6 4 9 9 O 1.45203 * 109.46602 * 179.97438 * 8 7 6 10 10 C 1.34232 * 116.99836 * 180.02562 * 9 8 7 11 11 O 1.20830 * 119.99544 * 359.97438 * 10 9 8 12 12 C 1.50694 * 120.00103 * 180.02562 * 10 9 8 13 13 C 1.50707 * 109.47262 * 179.97438 * 12 10 9 14 14 C 1.37643 * 120.12639 * 265.30991 * 13 12 10 15 15 C 1.38615 * 120.24281 * 180.31829 * 14 13 12 16 16 C 1.38658 * 120.50051 * 359.66907 * 15 14 13 17 17 C 1.37593 * 120.25264 * 0.02562 * 16 15 14 18 18 C 1.40688 * 120.12508 * 84.99750 * 13 12 10 19 19 C 1.41401 * 120.24844 * 359.97438 * 18 13 12 20 20 H 1.07999 * 119.99289 * 334.28466 * 19 18 13 21 21 C 1.39937 * 120.00394 * 154.28925 * 19 18 13 22 22 N 1.30829 * 120.00181 * 334.60180 * 21 19 18 23 23 Si 1.86801 * 120.00083 * 154.60226 * 21 19 18 24 24 H 1.48505 * 109.47160 * 179.97438 * 23 21 19 25 25 H 1.48495 * 109.47100 * 300.00105 * 23 21 19 26 26 H 1.48502 * 109.47051 * 60.00179 * 23 21 19 27 27 C 1.38226 * 120.76350 * 0.27371 * 7 6 4 28 28 H 1.09002 * 109.47538 * 90.00359 * 1 2 3 29 29 H 1.08999 * 109.46720 * 209.99742 * 1 2 3 30 30 H 1.08998 * 109.47663 * 329.99763 * 1 2 3 31 31 H 1.07993 * 120.41734 * 359.97438 * 3 2 1 32 32 H 1.09005 * 109.46838 * 270.01573 * 5 4 3 33 33 H 1.08990 * 109.47563 * 30.01608 * 5 4 3 34 34 H 1.09006 * 109.46858 * 150.02196 * 5 4 3 35 35 H 1.09000 * 109.47091 * 60.00551 * 8 7 6 36 36 H 1.08994 * 109.47137 * 299.99629 * 8 7 6 37 37 H 1.09001 * 109.46892 * 59.99945 * 12 10 9 38 38 H 1.08991 * 109.47294 * 299.99955 * 12 10 9 39 39 H 1.07998 * 119.87840 * 0.02562 * 14 13 12 40 40 H 1.07996 * 119.74749 * 179.68975 * 15 14 13 41 41 H 1.08000 * 119.87393 * 180.02562 * 16 15 14 42 42 H 1.07996 * 120.12941 * 180.02562 * 17 16 15 43 43 H 0.96998 * 119.99709 * 354.17607 * 22 21 19 44 44 H 1.07998 * 120.42055 * 179.70873 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2167 1.1914 0.0000 4 6 3.5980 1.1522 -0.0005 5 6 4.3795 2.4407 0.0000 6 7 4.2402 0.0003 -0.0016 7 6 3.5984 -1.1514 -0.0016 8 6 4.3802 -2.4398 -0.0034 9 8 3.4609 -3.5637 -0.0025 10 6 4.0008 -4.7927 -0.0033 11 8 5.2019 -4.9247 -0.0052 12 6 3.1091 -6.0075 -0.0030 13 6 3.9573 -7.2532 -0.0047 14 6 4.2643 -7.8783 -1.1920 15 6 5.0387 -9.0280 -1.1958 16 6 5.5182 -9.5574 -0.0074 17 6 5.2291 -8.9457 1.1906 18 6 4.4438 -7.7779 1.2066 19 6 4.1408 -7.1402 2.4318 20 1 3.9168 -6.0839 2.4497 21 6 4.1314 -7.8778 3.6210 22 7 3.9049 -9.1659 3.5900 23 14 4.4422 -7.0230 5.2526 24 1 4.3785 -8.0184 6.3529 25 1 5.7861 -6.3918 5.2326 26 1 3.4082 -5.9794 5.4696 27 6 2.2167 -1.1908 -0.0062 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 1.6965 2.1378 -0.0004 32 1 4.5673 2.7522 -1.0275 33 1 3.8075 3.2125 0.5148 34 1 5.3293 2.2893 0.5131 35 1 5.0089 -2.4845 0.8859 36 1 5.0069 -2.4833 -0.8941 37 1 2.4792 -5.9960 -0.8925 38 1 2.4807 -5.9966 0.8874 39 1 3.8965 -7.4743 -2.1236 40 1 5.2705 -9.5148 -2.1316 41 1 6.1211 -10.4534 -0.0222 42 1 5.6040 -9.3596 2.1150 43 1 3.6603 -9.5954 2.7554 44 1 1.6966 -2.1373 -0.0110 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000909145791.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:11 Heat of formation + Delta-G solvation = -53.892416 kcal Electronic energy + Delta-G solvation = -26269.189503 eV Core-core repulsion = 22536.329649 eV Total energy + Delta-G solvation = -3732.859854 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.67700 -39.85993 -37.87118 -36.07046 -34.34983 -33.90466 -33.32451 -31.96221 -29.28044 -28.88348 -27.93359 -27.31881 -26.43001 -24.96265 -22.30483 -21.17226 -21.02095 -20.93808 -19.58749 -17.78909 -17.27136 -16.50807 -16.40817 -16.32025 -15.81620 -15.00466 -14.92890 -14.56012 -14.39197 -14.17764 -13.80563 -13.57498 -13.41238 -13.22874 -13.01114 -12.81749 -12.40883 -12.37169 -12.19388 -12.16185 -12.06277 -11.77735 -11.55148 -11.30952 -11.24774 -10.89911 -10.52781 -10.50634 -10.40215 -9.86047 -9.71755 -9.61945 -9.58873 -9.42912 -8.99969 -8.91860 -7.63437 -7.57017 -7.17884 -4.48604 0.93057 1.08937 2.51484 2.80852 2.86042 3.06248 3.15254 3.27501 3.36428 3.52946 4.00150 4.15614 4.40248 4.43532 4.55469 4.86580 5.01201 5.11675 5.17838 5.25873 5.28006 5.32652 5.38889 5.40683 5.48550 5.53079 5.59155 5.72465 5.81131 5.85180 5.90653 6.06893 6.12644 6.14370 6.27640 6.30890 6.55831 6.60910 6.86451 6.94872 7.14719 7.36571 7.63483 7.77600 7.79426 7.83368 7.90058 8.14635 8.28210 8.37104 8.71801 8.86410 10.02769 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013193 B = 0.003072 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.893008 B = 9113.761440 C =10071.902151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.040 4.040 3 C -0.179 4.179 4 C 0.132 3.868 5 C -0.102 4.102 6 N -0.486 5.486 7 C 0.138 3.862 8 C 0.118 3.882 9 O -0.367 6.367 10 C 0.461 3.539 11 O -0.488 6.488 12 C -0.038 4.038 13 C -0.200 4.200 14 C -0.063 4.063 15 C -0.254 4.254 16 C -0.083 4.083 17 C -0.215 4.215 18 C 0.117 3.883 19 C -0.517 4.517 20 H 0.072 0.928 21 C 0.042 3.958 22 N -0.794 5.794 23 Si 1.059 2.941 24 H -0.273 1.273 25 H -0.274 1.274 26 H -0.275 1.275 27 C -0.157 4.157 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.133 0.867 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.108 0.892 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.106 0.894 43 H 0.300 0.700 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.724 17.853 -5.051 19.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.048 4.048 3 C -0.199 4.199 4 C -0.006 4.006 5 C -0.159 4.159 6 N -0.198 5.198 7 C 0.001 3.999 8 C 0.043 3.957 9 O -0.285 6.285 10 C 0.303 3.697 11 O -0.372 6.372 12 C -0.076 4.076 13 C -0.202 4.202 14 C -0.082 4.082 15 C -0.273 4.273 16 C -0.101 4.101 17 C -0.234 4.234 18 C 0.114 3.886 19 C -0.545 4.545 20 H 0.090 0.910 21 C -0.181 4.181 22 N -0.417 5.417 23 Si 0.882 3.118 24 H -0.197 1.197 25 H -0.200 1.200 26 H -0.201 1.201 27 C -0.177 4.177 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.151 0.849 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.126 0.874 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.124 0.876 43 H 0.114 0.886 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -5.273 17.489 -3.414 18.583 hybrid contribution -0.799 0.301 -1.745 1.943 sum -6.072 17.790 -5.159 19.492 Atomic orbital electron populations 1.20830 0.90041 1.03477 1.02925 1.20380 0.96915 0.92770 0.94701 1.21822 0.94719 0.98699 1.04665 1.21167 0.91212 0.93464 0.94726 1.20701 1.00335 0.91838 1.03064 1.67017 1.41392 0.97414 1.13949 1.20712 0.91403 0.92459 0.95330 1.21237 0.89901 0.80351 1.04166 1.86433 1.41224 1.15410 1.85399 1.24509 0.89646 0.83291 0.72222 1.90664 1.16607 1.86248 1.43699 1.19962 0.96365 0.86942 1.04300 1.18990 1.08154 0.99033 0.94013 1.20387 0.97064 0.95280 0.95425 1.20278 1.09659 1.01006 0.96342 1.20636 0.98344 0.97884 0.93247 1.21156 1.04878 1.00652 0.96686 1.17400 0.88325 0.90836 0.92029 1.20479 1.43571 0.97978 0.92448 0.90956 1.26946 0.91574 0.95008 1.04530 1.70458 1.26604 1.11072 1.33591 0.83724 0.78107 0.75948 0.73973 1.19748 1.19955 1.20089 1.21892 0.94678 0.99387 1.01717 0.90466 0.90639 0.91098 0.84914 0.90430 0.90718 0.90361 0.89003 0.89235 0.89273 0.87428 0.89354 0.89266 0.89222 0.87615 0.88638 0.83500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.85 10.06 36.00 0.36 -0.49 16 2 C -0.04 -0.42 5.92 -104.32 -0.62 -1.04 16 3 C -0.18 -1.77 9.45 -39.44 -0.37 -2.14 16 4 C 0.13 1.50 6.78 -82.59 -0.56 0.94 16 5 C -0.10 -0.80 10.17 36.01 0.37 -0.44 16 6 N -0.49 -6.86 10.19 -5.74 -0.06 -6.92 16 7 C 0.14 1.99 6.78 -82.59 -0.56 1.43 16 8 C 0.12 1.85 6.01 36.01 0.22 2.07 16 9 O -0.37 -6.19 8.66 -39.26 -0.34 -6.53 16 10 C 0.46 9.21 7.59 36.00 0.27 9.48 16 11 O -0.49 -11.46 15.78 -18.75 -0.30 -11.76 16 12 C -0.04 -0.75 5.29 -29.03 -0.15 -0.90 16 13 C -0.20 -4.70 4.43 -103.91 -0.46 -5.17 16 14 C -0.06 -1.41 9.66 -39.66 -0.38 -1.80 16 15 C -0.25 -5.71 10.05 -39.29 -0.39 -6.10 16 16 C -0.08 -1.94 10.02 -39.66 -0.40 -2.34 16 17 C -0.21 -5.54 7.95 -38.87 -0.31 -5.85 16 18 C 0.12 3.05 5.30 -106.82 -0.57 2.48 16 19 C -0.52 -13.43 8.08 -37.74 -0.30 -13.74 16 20 H 0.07 1.85 6.73 -52.49 -0.35 1.49 16 21 C 0.04 1.05 4.94 -17.34 -0.09 0.96 16 22 N -0.79 -20.75 12.31 55.55 0.68 -20.06 16 23 Si 1.06 21.79 30.00 -169.99 -5.10 16.69 16 24 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 25 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 26 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 27 C -0.16 -2.00 9.12 -39.44 -0.36 -2.36 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 30 H 0.07 0.42 8.10 -51.93 -0.42 0.00 16 31 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.09 1.50 8.13 -51.93 -0.42 1.08 16 36 H 0.09 1.38 8.13 -51.93 -0.42 0.96 16 37 H 0.09 1.44 8.05 -51.93 -0.42 1.02 16 38 H 0.11 2.08 7.06 -51.93 -0.37 1.71 16 39 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 40 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 41 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 42 H 0.11 2.81 6.49 -52.49 -0.34 2.47 16 43 H 0.30 8.00 6.68 -40.82 -0.27 7.73 16 44 H 0.15 1.81 6.98 -52.49 -0.37 1.44 16 LS Contribution 375.08 15.07 5.65 5.65 Total: -1.00 -30.44 375.08 -9.74 -40.18 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -5.98 Total: 7.74 kcal Atomic # 6 Polarization: -20.69 SS G_CDS: -4.31 Total: -25.00 kcal Atomic # 7 Polarization: -27.61 SS G_CDS: 0.63 Total: -26.98 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.64 Total: -18.28 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.10 Total: 16.69 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.44 -9.74 -40.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909145791.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.708 kcal (2) G-P(sol) polarization free energy of solvation -30.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds