Wall clock time and date at job start Tue Mar 31 2020 14:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38682 * 120.78431 * 2 1 4 4 C 1.38179 * 119.15761 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.61265 * 180.02562 * 4 3 2 6 6 N 1.31888 * 120.76887 * 0.02562 * 4 3 2 7 7 C 1.31850 * 121.72511 * 359.97438 * 6 4 3 8 8 C 1.50704 * 119.61541 * 179.97438 * 7 6 4 9 9 O 1.45203 * 109.46602 * 179.97438 * 8 7 6 10 10 C 1.34232 * 116.99836 * 180.02562 * 9 8 7 11 11 O 1.20830 * 119.99544 * 359.97438 * 10 9 8 12 12 C 1.50694 * 120.00103 * 180.02562 * 10 9 8 13 13 C 1.50707 * 109.47262 * 179.97438 * 12 10 9 14 14 C 1.37643 * 120.12639 * 265.30991 * 13 12 10 15 15 C 1.38615 * 120.24281 * 180.31829 * 14 13 12 16 16 C 1.38658 * 120.50051 * 359.66907 * 15 14 13 17 17 C 1.37593 * 120.25264 * 0.02562 * 16 15 14 18 18 C 1.40688 * 120.12508 * 84.99750 * 13 12 10 19 19 C 1.41401 * 120.24844 * 359.97438 * 18 13 12 20 20 H 1.07999 * 119.99289 * 334.28466 * 19 18 13 21 21 C 1.39937 * 120.00394 * 154.28925 * 19 18 13 22 22 N 1.30829 * 120.00181 * 334.60180 * 21 19 18 23 23 Si 1.86801 * 120.00083 * 154.60226 * 21 19 18 24 24 H 1.48505 * 109.47160 * 179.97438 * 23 21 19 25 25 H 1.48495 * 109.47100 * 300.00105 * 23 21 19 26 26 H 1.48502 * 109.47051 * 60.00179 * 23 21 19 27 27 C 1.38226 * 120.76350 * 0.27371 * 7 6 4 28 28 H 1.09002 * 109.47538 * 90.00359 * 1 2 3 29 29 H 1.08999 * 109.46720 * 209.99742 * 1 2 3 30 30 H 1.08998 * 109.47663 * 329.99763 * 1 2 3 31 31 H 1.07993 * 120.41734 * 359.97438 * 3 2 1 32 32 H 1.09005 * 109.46838 * 270.01573 * 5 4 3 33 33 H 1.08990 * 109.47563 * 30.01608 * 5 4 3 34 34 H 1.09006 * 109.46858 * 150.02196 * 5 4 3 35 35 H 1.09000 * 109.47091 * 60.00551 * 8 7 6 36 36 H 1.08994 * 109.47137 * 299.99629 * 8 7 6 37 37 H 1.09001 * 109.46892 * 59.99945 * 12 10 9 38 38 H 1.08991 * 109.47294 * 299.99955 * 12 10 9 39 39 H 1.07998 * 119.87840 * 0.02562 * 14 13 12 40 40 H 1.07996 * 119.74749 * 179.68975 * 15 14 13 41 41 H 1.08000 * 119.87393 * 180.02562 * 16 15 14 42 42 H 1.07996 * 120.12941 * 180.02562 * 17 16 15 43 43 H 0.96998 * 119.99709 * 354.17607 * 22 21 19 44 44 H 1.07998 * 120.42055 * 179.70873 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2167 1.1914 0.0000 4 6 3.5980 1.1522 -0.0005 5 6 4.3795 2.4407 0.0000 6 7 4.2402 0.0003 -0.0016 7 6 3.5984 -1.1514 -0.0016 8 6 4.3802 -2.4398 -0.0034 9 8 3.4609 -3.5637 -0.0025 10 6 4.0008 -4.7927 -0.0033 11 8 5.2019 -4.9247 -0.0052 12 6 3.1091 -6.0075 -0.0030 13 6 3.9573 -7.2532 -0.0047 14 6 4.2643 -7.8783 -1.1920 15 6 5.0387 -9.0280 -1.1958 16 6 5.5182 -9.5574 -0.0074 17 6 5.2291 -8.9457 1.1906 18 6 4.4438 -7.7779 1.2066 19 6 4.1408 -7.1402 2.4318 20 1 3.9168 -6.0839 2.4497 21 6 4.1314 -7.8778 3.6210 22 7 3.9049 -9.1659 3.5900 23 14 4.4422 -7.0230 5.2526 24 1 4.3785 -8.0184 6.3529 25 1 5.7861 -6.3918 5.2326 26 1 3.4082 -5.9794 5.4696 27 6 2.2167 -1.1908 -0.0062 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 1.6965 2.1378 -0.0004 32 1 4.5673 2.7522 -1.0275 33 1 3.8075 3.2125 0.5148 34 1 5.3293 2.2893 0.5131 35 1 5.0089 -2.4845 0.8859 36 1 5.0069 -2.4833 -0.8941 37 1 2.4792 -5.9960 -0.8925 38 1 2.4807 -5.9966 0.8874 39 1 3.8965 -7.4743 -2.1236 40 1 5.2705 -9.5148 -2.1316 41 1 6.1211 -10.4534 -0.0222 42 1 5.6040 -9.3596 2.1150 43 1 3.6603 -9.5954 2.7554 44 1 1.6966 -2.1373 -0.0110 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000909145791.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:10 Heat of formation + Delta-G solvation = -68.002326 kcal Electronic energy + Delta-G solvation = -26269.801355 eV Core-core repulsion = 22536.329649 eV Total energy + Delta-G solvation = -3733.471706 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.81274 -41.20444 -39.65403 -37.62092 -35.78135 -35.13998 -34.30587 -33.65703 -31.15180 -30.01301 -28.81731 -28.47778 -27.60672 -26.82382 -23.53527 -22.86639 -22.40174 -22.00300 -21.24121 -19.65307 -18.71569 -17.79140 -17.71758 -17.42891 -16.88491 -16.71615 -16.33560 -15.98279 -15.74840 -15.56528 -15.43849 -14.61105 -14.50166 -14.24267 -14.12413 -13.90853 -13.82830 -13.64394 -13.45478 -13.27651 -13.12730 -13.04592 -13.01427 -12.84428 -12.64635 -12.35614 -12.28013 -12.00137 -11.93214 -11.54686 -11.52317 -11.25922 -10.87253 -10.53498 -10.43479 -9.82697 -9.50492 -9.47740 -9.10743 -6.45127 0.02623 0.23427 0.76919 0.96254 1.25633 1.46122 1.57048 1.60789 1.74759 2.28730 2.63015 2.67921 3.11250 3.53699 3.59073 3.70627 3.89718 4.00418 4.09019 4.16232 4.17994 4.24186 4.38381 4.42592 4.45350 4.53380 4.54403 4.66462 4.67393 4.77125 4.79850 4.83496 4.90266 5.03523 5.04680 5.17247 5.24079 5.27014 5.29392 5.42406 5.46718 5.75009 5.76237 5.80751 5.93481 6.02305 6.24740 6.40920 6.77767 6.81958 6.92499 6.96750 8.05444 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013193 B = 0.003072 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.893008 B = 9113.761440 C =10071.902151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.040 4.040 3 C -0.171 4.171 4 C 0.118 3.882 5 C -0.100 4.100 6 N -0.516 5.516 7 C 0.114 3.886 8 C 0.121 3.879 9 O -0.352 6.352 10 C 0.469 3.531 11 O -0.529 6.529 12 C -0.038 4.038 13 C -0.205 4.205 14 C -0.073 4.073 15 C -0.250 4.250 16 C -0.091 4.091 17 C -0.243 4.243 18 C 0.088 3.912 19 C -0.544 4.544 20 H 0.067 0.933 21 C 0.008 3.992 22 N -0.815 5.815 23 Si 1.103 2.897 24 H -0.267 1.267 25 H -0.275 1.275 26 H -0.254 1.254 27 C -0.172 4.172 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.170 0.830 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.130 0.870 38 H 0.108 0.892 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.112 0.888 42 H 0.085 0.915 43 H 0.286 0.714 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.506 20.361 -6.190 22.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.048 4.048 3 C -0.190 4.190 4 C -0.020 4.020 5 C -0.157 4.157 6 N -0.229 5.229 7 C -0.022 4.022 8 C 0.047 3.953 9 O -0.268 6.268 10 C 0.313 3.687 11 O -0.417 6.417 12 C -0.075 4.075 13 C -0.207 4.207 14 C -0.091 4.091 15 C -0.269 4.269 16 C -0.110 4.110 17 C -0.263 4.263 18 C 0.085 3.915 19 C -0.572 4.572 20 H 0.085 0.915 21 C -0.209 4.209 22 N -0.438 5.438 23 Si 0.921 3.079 24 H -0.191 1.191 25 H -0.200 1.200 26 H -0.179 1.179 27 C -0.191 4.191 28 H 0.109 0.891 29 H 0.093 0.907 30 H 0.110 0.890 31 H 0.188 0.812 32 H 0.108 0.892 33 H 0.121 0.879 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.148 0.852 38 H 0.126 0.874 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.130 0.870 42 H 0.103 0.897 43 H 0.098 0.902 44 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -7.084 20.003 -4.573 21.708 hybrid contribution -0.258 -0.388 -1.578 1.645 sum -7.343 19.615 -6.150 21.829 Atomic orbital electron populations 1.20908 0.87541 1.04525 1.04055 1.20786 0.98673 0.92095 0.93219 1.22247 0.94186 1.00033 1.02583 1.21835 0.92571 0.93586 0.93959 1.20806 0.99936 0.90836 1.04102 1.66973 1.42518 0.98146 1.15224 1.20502 0.92018 0.91892 0.97779 1.21234 0.89938 0.80793 1.03362 1.86408 1.40950 1.14863 1.84625 1.24485 0.88929 0.84206 0.71076 1.90652 1.18285 1.86937 1.45843 1.20001 0.95958 0.85261 1.06248 1.19423 1.07541 1.00074 0.93614 1.20851 0.96633 0.95111 0.96459 1.20744 1.08269 1.00772 0.97116 1.20942 0.98479 0.98590 0.92966 1.21165 1.06388 1.01796 0.96939 1.17772 0.88963 0.91413 0.93340 1.20579 1.45481 0.97796 0.93352 0.91470 1.28157 0.90394 0.94966 1.07384 1.70553 1.28803 1.11788 1.32678 0.83175 0.78419 0.75625 0.70640 1.19124 1.20035 1.17859 1.21969 0.94070 1.00516 1.02591 0.89124 0.90682 0.89015 0.81212 0.89223 0.87905 0.91303 0.90493 0.89598 0.85214 0.87415 0.85807 0.86039 0.87040 0.89679 0.90172 0.83704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 10.06 71.23 0.72 -0.58 16 2 C -0.04 -0.75 5.92 -19.67 -0.12 -0.86 16 3 C -0.17 -2.86 9.45 22.36 0.21 -2.65 16 4 C 0.12 2.49 6.78 42.54 0.29 2.77 16 5 C -0.10 -1.34 10.17 71.24 0.72 -0.61 16 6 N -0.52 -14.54 10.19 -172.08 -1.75 -16.29 16 7 C 0.11 3.32 6.78 42.55 0.29 3.61 16 8 C 0.12 3.94 6.01 71.24 0.43 4.37 16 9 O -0.35 -11.94 8.66 -51.44 -0.45 -12.39 16 10 C 0.47 18.81 7.59 71.23 0.54 19.35 16 11 O -0.53 -25.44 15.78 21.95 0.35 -25.09 16 12 C -0.04 -1.44 5.29 29.10 0.15 -1.29 16 13 C -0.21 -9.58 4.43 -19.40 -0.09 -9.67 16 14 C -0.07 -3.11 9.66 22.22 0.21 -2.89 16 15 C -0.25 -10.80 10.05 22.46 0.23 -10.57 16 16 C -0.09 -4.30 10.02 22.22 0.22 -4.08 16 17 C -0.24 -13.02 7.95 22.73 0.18 -12.84 16 18 C 0.09 4.70 5.30 -21.29 -0.11 4.59 16 19 C -0.54 -29.27 8.08 23.46 0.19 -29.08 16 20 H 0.07 3.56 6.73 -2.91 -0.02 3.54 16 21 C 0.01 0.41 4.94 85.25 0.42 0.83 16 22 N -0.81 -44.27 12.31 21.82 0.27 -44.00 16 23 Si 1.10 44.80 30.00 68.60 2.06 46.86 16 24 H -0.27 -10.48 7.11 99.48 0.71 -9.78 16 25 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 26 H -0.25 -9.38 7.11 99.48 0.71 -8.67 16 27 C -0.17 -4.24 9.12 22.36 0.20 -4.04 16 28 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.07 0.88 8.10 -2.39 -0.02 0.87 16 30 H 0.09 0.69 8.10 -2.39 -0.02 0.67 16 31 H 0.17 1.51 8.06 -2.91 -0.02 1.49 16 32 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 33 H 0.10 0.79 8.08 -2.39 -0.02 0.77 16 34 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 35 H 0.08 2.68 8.13 -2.39 -0.02 2.66 16 36 H 0.09 2.79 8.13 -2.39 -0.02 2.77 16 37 H 0.13 3.85 8.05 -2.39 -0.02 3.84 16 38 H 0.11 4.16 7.06 -2.39 -0.02 4.14 16 39 H 0.12 4.37 8.06 -2.91 -0.02 4.35 16 40 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 41 H 0.11 4.60 8.06 -2.91 -0.02 4.58 16 42 H 0.09 4.79 6.49 -2.91 -0.02 4.77 16 43 H 0.29 16.05 6.68 -92.71 -0.62 15.43 16 44 H 0.15 3.49 6.98 -2.91 -0.02 3.47 16 Total: -1.00 -69.16 375.08 6.33 -62.83 By element: Atomic # 1 Polarization: 30.57 SS G_CDS: 1.16 Total: 31.73 kcal Atomic # 6 Polarization: -48.33 SS G_CDS: 4.69 Total: -43.64 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: -1.48 Total: -60.29 kcal Atomic # 8 Polarization: -37.38 SS G_CDS: -0.10 Total: -37.48 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.06 Total: 46.86 kcal Total: -69.16 6.33 -62.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909145791.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.174 kcal (2) G-P(sol) polarization free energy of solvation -69.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds