Wall clock time and date at job start Tue Mar 31 2020 13:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31508 * 119.65699 * 2 1 4 4 C 1.32772 * 121.77045 * 180.02562 * 3 2 1 5 5 C 1.48214 * 119.56585 * 180.02562 * 4 3 2 6 6 C 1.39437 * 120.13071 * 179.72321 * 5 4 3 7 7 C 1.37989 * 119.86627 * 179.77037 * 6 5 4 8 8 C 1.38347 * 120.12897 * 0.51019 * 7 6 5 9 9 C 1.38328 * 120.26340 * 359.73920 * 8 7 6 10 10 C 1.37992 * 120.13330 * 0.02562 * 9 8 7 11 11 C 1.39525 * 120.87209 * 359.74193 * 4 3 2 12 12 C 1.38031 * 119.21620 * 0.50857 * 11 4 3 13 13 C 1.39682 * 119.65369 * 180.02562 * 2 1 3 14 14 C 1.47584 * 120.46512 * 359.97438 * 13 2 1 15 15 O 1.21486 * 120.00148 * 353.74092 * 14 13 2 16 16 O 1.34736 * 119.99846 * 173.73816 * 14 13 2 17 17 C 1.45201 * 116.99759 * 179.97438 * 16 14 13 18 18 C 1.53002 * 109.46745 * 179.97438 * 17 16 14 19 19 C 1.52998 * 109.47119 * 179.97438 * 18 17 16 20 20 C 1.50700 * 109.47423 * 180.02562 * 19 18 17 21 21 H 1.07997 * 119.99952 * 0.02562 * 20 19 18 22 22 C 1.37875 * 120.00292 * 180.02562 * 20 19 18 23 23 N 1.31515 * 120.00261 * 180.02562 * 22 20 19 24 24 Si 1.86804 * 119.99922 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.46864 * 90.00264 * 24 22 20 26 26 H 1.48495 * 109.47183 * 210.00318 * 24 22 20 27 27 H 1.48509 * 109.47204 * 330.00532 * 24 22 20 28 28 H 1.09001 * 109.47427 * 263.38546 * 1 2 3 29 29 H 1.09000 * 109.46780 * 23.38323 * 1 2 3 30 30 H 1.09000 * 109.47521 * 143.38302 * 1 2 3 31 31 H 1.07999 * 120.06825 * 0.02562 * 6 5 4 32 32 H 1.08003 * 119.93548 * 180.27395 * 7 6 5 33 33 H 1.08005 * 119.86510 * 179.72446 * 8 7 6 34 34 H 1.08006 * 119.93780 * 180.02562 * 9 8 7 35 35 H 1.07999 * 120.06860 * 180.02562 * 10 9 8 36 36 H 1.08001 * 120.39340 * 180.26159 * 11 4 3 37 37 H 1.07999 * 120.80934 * 179.77812 * 12 11 4 38 38 H 1.08997 * 109.47062 * 300.00080 * 17 16 14 39 39 H 1.08999 * 109.46803 * 60.00604 * 17 16 14 40 40 H 1.09000 * 109.47448 * 300.00436 * 18 17 16 41 41 H 1.08999 * 109.46896 * 60.00760 * 18 17 16 42 42 H 1.09000 * 109.47329 * 300.00525 * 19 18 17 43 43 H 1.09005 * 109.47001 * 60.00453 * 19 18 17 44 44 H 0.97002 * 120.00045 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1577 1.1428 0.0000 4 6 3.4846 1.1918 -0.0005 5 6 4.1678 2.5070 0.0001 6 6 5.5607 2.5722 0.0054 7 6 6.1912 3.7996 0.0011 8 6 5.4442 4.9640 0.0023 9 6 4.0621 4.9057 0.0023 10 6 3.4203 3.6841 0.0016 11 6 4.2442 0.0214 0.0043 12 6 3.6005 -1.1996 -0.0010 13 6 2.1981 -1.2139 -0.0005 14 6 1.4629 -2.4935 -0.0005 15 8 0.2535 -2.4992 0.1146 16 8 2.1329 -3.6555 -0.1283 17 6 1.3450 -4.8751 -0.1194 18 6 2.2722 -6.0822 -0.2750 19 6 1.4422 -7.3674 -0.2650 20 6 2.3554 -8.5565 -0.4176 21 1 3.4212 -8.4102 -0.5119 22 6 1.8302 -9.8311 -0.4369 23 7 2.6272 -10.8688 -0.5696 24 14 -0.0133 -10.0843 -0.2732 25 1 -0.6359 -10.0752 -1.6214 26 1 -0.2773 -11.3890 0.3850 27 1 -0.5924 -8.9900 0.5469 28 1 -0.3634 -0.1184 1.0208 29 1 -0.3633 0.9433 -0.4079 30 1 -0.3634 -0.8248 -0.6129 31 1 6.1449 1.6638 0.0087 32 1 7.2700 3.8513 0.0008 33 1 5.9421 5.9225 0.0034 34 1 3.4841 5.8180 0.0027 35 1 2.3413 3.6397 0.0012 36 1 5.3231 0.0703 0.0081 37 1 4.1631 -2.1215 -0.0010 38 1 0.8039 -4.9512 0.8237 39 1 0.6343 -4.8545 -0.9456 40 1 2.8130 -6.0058 -1.2183 41 1 2.9832 -6.1030 0.5509 42 1 0.9017 -7.4436 0.6785 43 1 0.7308 -7.3469 -1.0907 44 1 2.2577 -11.7656 -0.5828 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000912958672.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:26 Heat of formation + Delta-G solvation = -36.536172 kcal Electronic energy + Delta-G solvation = -25226.805803 eV Core-core repulsion = 21494.698572 eV Total energy + Delta-G solvation = -3732.107231 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.19551 -40.02433 -38.98849 -36.67866 -34.18113 -33.80184 -33.33022 -31.85489 -31.36607 -30.59561 -28.37339 -27.38156 -25.31444 -23.51873 -23.26761 -22.07131 -21.84343 -21.00063 -20.27694 -17.99589 -17.84204 -17.13755 -16.65933 -16.52517 -16.32955 -16.13467 -15.00232 -14.94320 -14.77891 -14.48182 -14.20387 -14.10186 -13.82610 -13.36695 -13.35041 -13.26201 -12.91024 -12.74518 -12.53197 -12.39484 -12.18315 -11.94489 -11.71381 -11.51247 -11.09252 -11.00670 -10.49853 -10.44544 -10.38818 -10.11107 -9.93497 -9.85838 -9.80547 -9.70349 -9.37188 -9.27832 -8.66473 -8.59155 -6.09394 -4.08668 -0.15928 0.87418 0.98922 1.12166 2.44078 2.65409 3.23682 3.28084 3.35911 3.38957 3.59151 3.66169 4.13066 4.35404 4.40763 4.43769 4.52099 4.58375 4.62921 4.73426 4.92367 5.07136 5.15230 5.17178 5.23843 5.40979 5.41302 5.42399 5.47872 5.54551 5.58323 5.65461 5.75933 5.81752 5.90380 6.00418 6.07000 6.12941 6.20030 6.34482 6.36283 6.51573 6.61256 6.75460 7.17337 7.28971 7.50477 7.68434 7.76876 8.46927 8.94599 9.52019 11.03687 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.028266 B = 0.001913 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.359220 B =14635.937330 C =15589.911819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.203 3.797 3 N -0.487 5.487 4 C 0.202 3.798 5 C -0.058 4.058 6 C -0.095 4.095 7 C -0.125 4.125 8 C -0.106 4.106 9 C -0.128 4.128 10 C -0.074 4.074 11 C -0.186 4.186 12 C -0.008 4.008 13 C -0.182 4.182 14 C 0.509 3.491 15 O -0.500 6.500 16 O -0.352 6.352 17 C 0.067 3.933 18 C -0.102 4.102 19 C -0.011 4.011 20 C -0.523 4.523 21 H 0.074 0.926 22 C 0.068 3.932 23 N -0.901 5.901 24 Si 0.879 3.121 25 H -0.276 1.276 26 H -0.287 1.287 27 H -0.265 1.265 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.103 0.897 31 H 0.130 0.870 32 H 0.127 0.873 33 H 0.124 0.876 34 H 0.126 0.874 35 H 0.136 0.864 36 H 0.146 0.854 37 H 0.156 0.844 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.019 0.981 43 H 0.015 0.985 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.219 32.766 1.443 33.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.063 3.937 3 N -0.196 5.196 4 C 0.066 3.934 5 C -0.059 4.059 6 C -0.114 4.114 7 C -0.143 4.143 8 C -0.124 4.124 9 C -0.146 4.146 10 C -0.093 4.093 11 C -0.205 4.205 12 C -0.034 4.034 13 C -0.186 4.186 14 C 0.354 3.646 15 O -0.391 6.391 16 O -0.268 6.268 17 C -0.006 4.006 18 C -0.139 4.139 19 C -0.048 4.048 20 C -0.561 4.561 21 H 0.092 0.908 22 C -0.134 4.134 23 N -0.540 5.540 24 Si 0.706 3.294 25 H -0.202 1.202 26 H -0.213 1.213 27 H -0.190 1.190 28 H 0.105 0.895 29 H 0.091 0.909 30 H 0.121 0.879 31 H 0.147 0.853 32 H 0.145 0.855 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.154 0.846 36 H 0.164 0.836 37 H 0.174 0.826 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.038 0.962 43 H 0.033 0.967 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.377 33.261 1.467 33.464 hybrid contribution -0.454 -1.194 0.087 1.280 sum 2.923 32.067 1.554 32.238 Atomic orbital electron populations 1.21115 0.87155 1.04176 1.04498 1.21462 0.97575 0.86003 0.88614 1.67610 1.08614 1.28281 1.15110 1.20013 0.89109 0.92668 0.91563 1.18525 0.92787 0.90921 1.03641 1.21301 0.93121 0.98535 0.98401 1.21094 1.00186 0.92126 1.00924 1.21340 0.94203 0.98558 0.98299 1.21190 0.94709 0.97836 1.00873 1.21397 1.00936 0.91120 0.95842 1.22049 1.01833 0.91938 1.04715 1.21940 0.92946 0.99310 0.89161 1.20082 0.94501 0.92142 1.11850 1.20757 0.85868 0.84551 0.73466 1.90789 1.14817 1.87807 1.45650 1.86538 1.42423 1.15157 1.82676 1.23549 0.94637 0.80087 1.02285 1.21571 0.98269 0.91387 1.02714 1.19521 0.96094 0.92401 0.96780 1.21045 0.95196 0.89227 1.50583 0.90802 1.25015 0.97942 0.95990 0.94441 1.69906 1.35095 0.98550 1.50401 0.86787 0.86077 0.77720 0.78772 1.20199 1.21258 1.18968 0.89522 0.90854 0.87887 0.85253 0.85468 0.85794 0.85585 0.84569 0.83628 0.82628 0.91304 0.91317 0.91496 0.91484 0.96243 0.96677 0.92625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 8.86 36.01 0.32 -0.92 16 2 C 0.20 2.47 6.82 -82.19 -0.56 1.91 16 3 N -0.49 -5.73 9.31 -5.72 -0.05 -5.79 16 4 C 0.20 2.12 6.73 -82.88 -0.56 1.56 16 5 C -0.06 -0.52 5.88 -104.91 -0.62 -1.14 16 6 C -0.09 -0.67 9.42 -39.23 -0.37 -1.04 16 7 C -0.13 -0.76 10.03 -39.63 -0.40 -1.16 16 8 C -0.11 -0.63 10.04 -39.51 -0.40 -1.02 16 9 C -0.13 -0.86 10.03 -39.64 -0.40 -1.26 16 10 C -0.07 -0.63 9.57 -39.23 -0.38 -1.01 16 11 C -0.19 -1.69 9.44 -39.18 -0.37 -2.06 16 12 C -0.01 -0.09 9.72 -38.90 -0.38 -0.47 16 13 C -0.18 -2.30 5.89 -104.79 -0.62 -2.91 16 14 C 0.51 7.50 7.82 34.54 0.27 7.77 16 15 O -0.50 -8.07 13.14 -19.25 -0.25 -8.32 16 16 O -0.35 -5.47 9.56 -40.59 -0.39 -5.86 16 17 C 0.07 1.13 5.48 37.16 0.20 1.34 16 18 C -0.10 -1.97 5.53 -26.73 -0.15 -2.11 16 19 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 20 C -0.52 -14.70 9.66 -34.44 -0.33 -15.04 16 21 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 22 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 23 N -0.90 -27.54 13.96 55.43 0.77 -26.76 16 24 Si 0.88 21.51 27.47 -169.99 -4.67 16.84 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 28 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.10 1.25 5.85 -51.93 -0.30 0.95 16 31 H 0.13 0.66 6.17 -52.49 -0.32 0.34 16 32 H 0.13 0.49 8.06 -52.48 -0.42 0.07 16 33 H 0.12 0.46 8.06 -52.48 -0.42 0.04 16 34 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16 35 H 0.14 1.17 7.53 -52.49 -0.40 0.77 16 36 H 0.15 0.89 6.17 -52.49 -0.32 0.57 16 37 H 0.16 1.42 7.71 -52.49 -0.40 1.02 16 38 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 43 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 44 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 372.14 15.07 5.61 5.61 Total: -1.00 -32.29 372.14 -9.83 -42.12 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -5.91 Total: -1.79 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -4.94 Total: -16.06 kcal Atomic # 7 Polarization: -33.27 SS G_CDS: 0.72 Total: -32.55 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: -0.64 Total: -14.18 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.29 -9.83 -42.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912958672.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.581 kcal (2) G-P(sol) polarization free energy of solvation -32.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds