Wall clock time and date at job start Tue Mar 31 2020 13:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31508 * 119.65699 * 2 1 4 4 C 1.32772 * 121.77045 * 180.02562 * 3 2 1 5 5 C 1.48214 * 119.56585 * 180.02562 * 4 3 2 6 6 C 1.39437 * 120.13071 * 179.72321 * 5 4 3 7 7 C 1.37989 * 119.86627 * 179.77037 * 6 5 4 8 8 C 1.38347 * 120.12897 * 0.51019 * 7 6 5 9 9 C 1.38328 * 120.26340 * 359.73920 * 8 7 6 10 10 C 1.37992 * 120.13330 * 0.02562 * 9 8 7 11 11 C 1.39525 * 120.87209 * 359.74193 * 4 3 2 12 12 C 1.38031 * 119.21620 * 0.50857 * 11 4 3 13 13 C 1.39682 * 119.65369 * 180.02562 * 2 1 3 14 14 C 1.47584 * 120.46512 * 359.97438 * 13 2 1 15 15 O 1.21486 * 120.00148 * 353.74092 * 14 13 2 16 16 O 1.34736 * 119.99846 * 173.73816 * 14 13 2 17 17 C 1.45201 * 116.99759 * 179.97438 * 16 14 13 18 18 C 1.53002 * 109.46745 * 179.97438 * 17 16 14 19 19 C 1.52998 * 109.47119 * 179.97438 * 18 17 16 20 20 C 1.50700 * 109.47423 * 180.02562 * 19 18 17 21 21 H 1.07997 * 119.99952 * 0.02562 * 20 19 18 22 22 C 1.37875 * 120.00292 * 180.02562 * 20 19 18 23 23 N 1.31515 * 120.00261 * 180.02562 * 22 20 19 24 24 Si 1.86804 * 119.99922 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.46864 * 90.00264 * 24 22 20 26 26 H 1.48495 * 109.47183 * 210.00318 * 24 22 20 27 27 H 1.48509 * 109.47204 * 330.00532 * 24 22 20 28 28 H 1.09001 * 109.47427 * 263.38546 * 1 2 3 29 29 H 1.09000 * 109.46780 * 23.38323 * 1 2 3 30 30 H 1.09000 * 109.47521 * 143.38302 * 1 2 3 31 31 H 1.07999 * 120.06825 * 0.02562 * 6 5 4 32 32 H 1.08003 * 119.93548 * 180.27395 * 7 6 5 33 33 H 1.08005 * 119.86510 * 179.72446 * 8 7 6 34 34 H 1.08006 * 119.93780 * 180.02562 * 9 8 7 35 35 H 1.07999 * 120.06860 * 180.02562 * 10 9 8 36 36 H 1.08001 * 120.39340 * 180.26159 * 11 4 3 37 37 H 1.07999 * 120.80934 * 179.77812 * 12 11 4 38 38 H 1.08997 * 109.47062 * 300.00080 * 17 16 14 39 39 H 1.08999 * 109.46803 * 60.00604 * 17 16 14 40 40 H 1.09000 * 109.47448 * 300.00436 * 18 17 16 41 41 H 1.08999 * 109.46896 * 60.00760 * 18 17 16 42 42 H 1.09000 * 109.47329 * 300.00525 * 19 18 17 43 43 H 1.09005 * 109.47001 * 60.00453 * 19 18 17 44 44 H 0.97002 * 120.00045 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1577 1.1428 0.0000 4 6 3.4846 1.1918 -0.0005 5 6 4.1678 2.5070 0.0001 6 6 5.5607 2.5722 0.0054 7 6 6.1912 3.7996 0.0011 8 6 5.4442 4.9640 0.0023 9 6 4.0621 4.9057 0.0023 10 6 3.4203 3.6841 0.0016 11 6 4.2442 0.0214 0.0043 12 6 3.6005 -1.1996 -0.0010 13 6 2.1981 -1.2139 -0.0005 14 6 1.4629 -2.4935 -0.0005 15 8 0.2535 -2.4992 0.1146 16 8 2.1329 -3.6555 -0.1283 17 6 1.3450 -4.8751 -0.1194 18 6 2.2722 -6.0822 -0.2750 19 6 1.4422 -7.3674 -0.2650 20 6 2.3554 -8.5565 -0.4176 21 1 3.4212 -8.4102 -0.5119 22 6 1.8302 -9.8311 -0.4369 23 7 2.6272 -10.8688 -0.5696 24 14 -0.0133 -10.0843 -0.2732 25 1 -0.6359 -10.0752 -1.6214 26 1 -0.2773 -11.3890 0.3850 27 1 -0.5924 -8.9900 0.5469 28 1 -0.3634 -0.1184 1.0208 29 1 -0.3633 0.9433 -0.4079 30 1 -0.3634 -0.8248 -0.6129 31 1 6.1449 1.6638 0.0087 32 1 7.2700 3.8513 0.0008 33 1 5.9421 5.9225 0.0034 34 1 3.4841 5.8180 0.0027 35 1 2.3413 3.6397 0.0012 36 1 5.3231 0.0703 0.0081 37 1 4.1631 -2.1215 -0.0010 38 1 0.8039 -4.9512 0.8237 39 1 0.6343 -4.8545 -0.9456 40 1 2.8130 -6.0058 -1.2183 41 1 2.9832 -6.1030 0.5509 42 1 0.9017 -7.4436 0.6785 43 1 0.7308 -7.3469 -1.0907 44 1 2.2577 -11.7656 -0.5828 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000912958672.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:25 Heat of formation + Delta-G solvation = -52.542426 kcal Electronic energy + Delta-G solvation = -25227.499887 eV Core-core repulsion = 21494.698572 eV Total energy + Delta-G solvation = -3732.801314 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.12231 -40.99014 -39.62847 -37.90923 -35.96375 -34.56087 -34.29040 -33.74258 -31.88279 -31.27053 -29.70898 -28.67245 -26.19845 -24.87714 -24.11597 -22.92191 -22.62654 -22.11740 -21.78339 -19.07136 -18.98366 -18.46795 -17.87987 -17.75669 -17.27529 -16.77469 -16.30178 -16.06661 -15.52082 -15.40322 -15.35175 -15.22345 -14.81272 -14.51272 -14.35564 -14.14536 -14.03327 -13.84038 -13.77340 -13.60785 -13.25261 -13.09458 -12.85488 -12.59725 -12.21918 -12.05114 -12.02604 -11.98288 -11.76355 -11.41410 -11.39205 -11.33333 -11.19802 -10.77637 -10.70165 -10.60079 -9.87197 -9.33009 -8.30353 -6.35296 -0.95446 0.07211 0.45120 0.49561 1.36861 1.38365 1.42748 1.49168 1.50535 2.35465 2.50205 2.84422 3.01867 3.04936 3.39782 3.45582 3.59892 3.81281 3.98689 4.00899 4.02283 4.11989 4.15306 4.28717 4.38114 4.43526 4.55210 4.60215 4.64674 4.66506 4.72398 4.74236 4.82032 4.92795 4.96147 5.01678 5.07538 5.16294 5.27652 5.40502 5.48819 5.49592 5.56550 5.57051 5.61191 5.62629 6.03362 6.25463 6.58130 6.68752 6.72725 7.29258 8.86048 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.028266 B = 0.001913 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.359220 B =14635.937330 C =15589.911819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.193 3.807 3 N -0.501 5.501 4 C 0.198 3.802 5 C -0.083 4.083 6 C -0.097 4.097 7 C -0.128 4.128 8 C -0.103 4.103 9 C -0.135 4.135 10 C -0.091 4.091 11 C -0.179 4.179 12 C -0.008 4.008 13 C -0.204 4.204 14 C 0.510 3.490 15 O -0.519 6.519 16 O -0.353 6.353 17 C 0.076 3.924 18 C -0.092 4.092 19 C -0.010 4.010 20 C -0.534 4.534 21 H 0.036 0.964 22 C 0.005 3.995 23 N -0.949 5.949 24 Si 0.949 3.051 25 H -0.266 1.266 26 H -0.284 1.284 27 H -0.245 1.245 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.149 0.851 32 H 0.153 0.847 33 H 0.150 0.850 34 H 0.143 0.857 35 H 0.125 0.875 36 H 0.179 0.821 37 H 0.168 0.832 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.026 0.974 43 H 0.025 0.975 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.513 35.104 1.666 35.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.054 3.946 3 N -0.211 5.211 4 C 0.063 3.937 5 C -0.084 4.084 6 C -0.115 4.115 7 C -0.146 4.146 8 C -0.122 4.122 9 C -0.153 4.153 10 C -0.110 4.110 11 C -0.198 4.198 12 C -0.033 4.033 13 C -0.207 4.207 14 C 0.356 3.644 15 O -0.410 6.410 16 O -0.269 6.269 17 C 0.003 3.997 18 C -0.130 4.130 19 C -0.047 4.047 20 C -0.572 4.572 21 H 0.054 0.946 22 C -0.192 4.192 23 N -0.589 5.589 24 Si 0.772 3.228 25 H -0.191 1.191 26 H -0.210 1.210 27 H -0.169 1.169 28 H 0.105 0.895 29 H 0.103 0.897 30 H 0.108 0.892 31 H 0.167 0.833 32 H 0.171 0.829 33 H 0.167 0.833 34 H 0.161 0.839 35 H 0.143 0.857 36 H 0.196 0.804 37 H 0.186 0.814 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.044 0.956 43 H 0.043 0.957 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.677 35.629 1.690 35.858 hybrid contribution -0.357 -1.748 0.007 1.784 sum 3.321 33.880 1.697 34.085 Atomic orbital electron populations 1.21045 0.86872 1.04225 1.04287 1.21600 0.98043 0.86136 0.88803 1.67641 1.09619 1.27970 1.15915 1.20457 0.88878 0.94030 0.90384 1.18647 0.93795 0.90269 1.05655 1.21574 0.92347 0.99983 0.97622 1.21470 1.01596 0.91665 0.99877 1.21725 0.93907 0.99867 0.96660 1.21438 0.95527 0.97777 1.00526 1.21461 1.00675 0.92018 0.96834 1.22365 1.03371 0.90769 1.03317 1.22141 0.92139 1.00456 0.88520 1.20037 0.95455 0.90989 1.14219 1.21108 0.85830 0.84683 0.72756 1.90779 1.15587 1.87945 1.46669 1.86512 1.42264 1.15121 1.83009 1.23244 0.93838 0.79863 1.02758 1.21324 0.98051 0.91056 1.02564 1.19453 0.95787 0.92240 0.97245 1.21406 0.94424 0.91365 1.50004 0.94563 1.25995 1.03451 0.95617 0.94110 1.70058 1.37620 0.99223 1.52043 0.85680 0.79470 0.78197 0.79457 1.19130 1.20951 1.16887 0.89497 0.89683 0.89154 0.83345 0.82919 0.83255 0.83923 0.85668 0.80353 0.81408 0.90863 0.90815 0.91754 0.91717 0.95583 0.95707 0.92424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.39 8.86 71.24 0.63 -1.76 16 2 C 0.19 4.73 6.82 42.96 0.29 5.03 16 3 N -0.50 -11.78 9.31 -172.01 -1.60 -13.38 16 4 C 0.20 3.96 6.73 41.97 0.28 4.24 16 5 C -0.08 -1.40 5.88 -20.05 -0.12 -1.52 16 6 C -0.10 -1.13 9.42 22.50 0.21 -0.92 16 7 C -0.13 -1.15 10.03 22.24 0.22 -0.93 16 8 C -0.10 -0.93 10.04 22.32 0.22 -0.71 16 9 C -0.13 -1.58 10.03 22.23 0.22 -1.36 16 10 C -0.09 -1.49 9.57 22.50 0.22 -1.28 16 11 C -0.18 -2.94 9.44 22.53 0.21 -2.73 16 12 C -0.01 -0.15 9.72 22.71 0.22 0.07 16 13 C -0.20 -5.06 5.89 -19.97 -0.12 -5.18 16 14 C 0.51 14.89 7.82 70.29 0.55 15.44 16 15 O -0.52 -16.67 13.14 19.88 0.26 -16.41 16 16 O -0.35 -10.70 9.56 -56.46 -0.54 -11.24 16 17 C 0.08 2.48 5.48 71.98 0.39 2.87 16 18 C -0.09 -3.51 5.53 30.59 0.17 -3.34 16 19 C -0.01 -0.45 4.04 29.85 0.12 -0.33 16 20 C -0.53 -30.50 9.66 25.60 0.25 -30.25 16 21 H 0.04 2.27 7.99 -2.91 -0.02 2.24 16 22 C 0.01 0.31 5.47 84.65 0.46 0.77 16 23 N -0.95 -59.24 13.96 21.45 0.30 -58.95 16 24 Si 0.95 43.85 27.47 68.60 1.88 45.73 16 25 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 26 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 27 H -0.25 -10.49 6.54 99.48 0.65 -9.84 16 28 H 0.09 1.88 8.14 -2.39 -0.02 1.87 16 29 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.09 2.25 5.85 -2.39 -0.01 2.23 16 31 H 0.15 1.03 6.17 -2.91 -0.02 1.01 16 32 H 0.15 0.56 8.06 -2.91 -0.02 0.54 16 33 H 0.15 0.55 8.06 -2.91 -0.02 0.53 16 34 H 0.14 1.08 8.06 -2.91 -0.02 1.06 16 35 H 0.13 2.22 7.53 -2.91 -0.02 2.20 16 36 H 0.18 1.61 6.17 -2.91 -0.02 1.60 16 37 H 0.17 2.81 7.71 -2.91 -0.02 2.79 16 38 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 41 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 42 H 0.03 1.16 7.20 -2.39 -0.02 1.14 16 43 H 0.02 1.09 7.57 -2.38 -0.02 1.07 16 44 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -70.87 372.14 5.70 -65.17 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: 0.95 Total: 10.95 kcal Atomic # 6 Polarization: -26.32 SS G_CDS: 4.45 Total: -21.87 kcal Atomic # 7 Polarization: -71.02 SS G_CDS: -1.30 Total: -72.32 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: -0.28 Total: -27.65 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.88 Total: 45.73 kcal Total: -70.87 5.70 -65.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912958672.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.623 kcal (2) G-P(sol) polarization free energy of solvation -70.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds