Wall clock time and date at job start Tue Mar 31 2020 14:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47433 * 2 1 4 4 N 1.46499 * 109.47061 * 120.00327 * 2 1 3 5 5 C 1.34778 * 119.99971 * 303.19879 * 4 2 1 6 6 O 1.21592 * 119.99957 * 0.02562 * 5 4 2 7 7 C 1.47534 * 119.99925 * 180.02562 * 5 4 2 8 8 C 1.39663 * 120.20064 * 359.97438 * 7 5 4 9 9 C 1.37824 * 119.92310 * 179.97438 * 8 7 5 10 10 C 1.38572 * 120.32049 * 0.02723 * 9 8 7 11 11 C 1.38023 * 120.40375 * 359.97438 * 10 9 8 12 12 C 1.38832 * 120.07267 * 359.95398 * 11 10 9 13 13 O 1.35519 * 120.16234 * 180.02562 * 12 11 10 14 14 C 1.34813 * 116.99849 * 354.00132 * 13 12 11 15 15 H 1.07995 * 120.00584 * 5.09247 * 14 13 12 16 16 C 1.38708 * 119.99808 * 185.08559 * 14 13 12 17 17 N 1.31518 * 119.99798 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 120.00009 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47212 * 89.99739 * 18 16 14 20 20 H 1.48500 * 109.46839 * 209.99752 * 18 16 14 21 21 H 1.48496 * 109.47136 * 329.99803 * 18 16 14 22 22 C 1.50704 * 109.46705 * 239.99835 * 2 1 3 23 23 C 1.38242 * 119.99910 * 84.48330 * 22 2 1 24 24 C 1.38235 * 119.99866 * 179.76560 * 23 22 2 25 25 C 1.38235 * 119.99781 * 0.50480 * 24 23 22 26 26 C 1.38234 * 120.00304 * 359.74808 * 25 24 23 27 27 C 1.38228 * 120.00143 * 264.75566 * 22 2 1 28 28 H 1.09007 * 109.46459 * 300.00233 * 1 2 3 29 29 H 1.09005 * 109.47080 * 59.99710 * 1 2 3 30 30 H 1.08998 * 109.47450 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47304 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.46744 * 300.00426 * 3 2 1 33 33 H 1.08994 * 109.47273 * 59.99809 * 3 2 1 34 34 H 0.96996 * 120.00086 * 123.20198 * 4 2 1 35 35 H 1.08001 * 120.03738 * 0.28418 * 8 7 5 36 36 H 1.07996 * 119.83916 * 180.02562 * 9 8 7 37 37 H 1.08005 * 119.79616 * 179.97438 * 10 9 8 38 38 H 1.08001 * 119.96681 * 179.97438 * 11 10 9 39 39 H 0.97000 * 119.99428 * 180.02562 * 17 16 14 40 40 H 1.08003 * 119.99646 * 359.97438 * 23 22 2 41 41 H 1.08003 * 119.99770 * 180.23265 * 24 23 22 42 42 H 1.08005 * 119.99775 * 179.72277 * 25 24 23 43 43 H 1.07994 * 120.00176 * 179.97438 * 26 25 24 44 44 H 1.07999 * 120.00255 * 0.02562 * 27 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.6404 -0.2691 2.4192 6 8 0.8938 0.6842 2.5298 7 6 2.1326 -0.9643 3.6238 8 6 2.9899 -2.0600 3.5015 9 6 3.4467 -2.7049 4.6307 10 6 3.0591 -2.2719 5.8887 11 6 2.2124 -1.1905 6.0250 12 6 1.7435 -0.5278 4.8988 13 8 0.9124 0.5345 5.0306 14 6 0.4790 0.8219 6.2743 15 1 0.8593 0.2685 7.1201 16 6 -0.4555 1.8286 6.4678 17 7 -0.8779 2.1093 7.6812 18 14 -1.1138 2.7856 5.0048 19 1 -2.3226 2.1068 4.4727 20 1 -1.4676 4.1628 5.4330 21 1 -0.0746 2.8479 3.9459 22 6 2.0323 -0.7105 -1.2305 23 6 2.1541 -0.0235 -2.4240 24 6 2.6194 -0.6740 -3.5515 25 6 2.9529 -2.0140 -3.4881 26 6 2.8261 -2.7022 -2.2960 27 6 2.3658 -2.0504 -1.1672 28 1 -0.3632 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9563 0.8899 34 1 2.6137 -1.4513 1.1079 35 1 3.2985 -2.3985 2.5235 36 1 4.1099 -3.5518 4.5346 37 1 3.4219 -2.7838 6.7678 38 1 1.9145 -0.8593 7.0088 39 1 -1.5317 2.8130 7.8164 40 1 1.8889 1.0222 -2.4745 41 1 2.7181 -0.1363 -4.4829 42 1 3.3122 -2.5233 -4.3701 43 1 3.0863 -3.7492 -2.2466 44 1 2.2660 -2.5884 -0.2360 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921154842.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:07 Heat of formation + Delta-G solvation = -1.648395 kcal Electronic energy + Delta-G solvation = -27424.352265 eV Core-core repulsion = 23693.757882 eV Total energy + Delta-G solvation = -3730.594383 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.48325 -39.43762 -38.27566 -36.56425 -35.57825 -32.46436 -32.38047 -31.10042 -30.31078 -29.39664 -29.17723 -27.13824 -25.33824 -24.04283 -23.00551 -22.50109 -21.43583 -20.43035 -19.29303 -18.35523 -17.88806 -17.03863 -16.24646 -15.82337 -15.10885 -14.93216 -14.64484 -14.47111 -14.44271 -14.05851 -13.82477 -13.74971 -13.71755 -13.41939 -13.33787 -12.97846 -12.53457 -12.35742 -12.19741 -12.10094 -11.97770 -11.71043 -11.41982 -11.25953 -11.18837 -11.06627 -10.85610 -10.75757 -10.72095 -10.04890 -9.57840 -9.12150 -9.07517 -8.89848 -8.88287 -8.62569 -8.38548 -7.48422 -6.47403 -4.12425 1.14686 1.19909 1.57020 2.18172 3.31160 3.37496 3.44802 3.55732 3.64579 3.65337 4.34725 4.43797 4.51501 4.68116 4.73267 4.78777 4.91958 5.08657 5.10115 5.23687 5.25293 5.35501 5.37181 5.39454 5.62465 5.68680 5.76061 5.81201 5.83992 5.94725 5.99152 6.03289 6.06396 6.23469 6.30439 6.32547 6.37026 6.50871 6.52866 6.54971 6.78433 6.83454 6.90659 7.00828 7.14269 7.47366 7.67615 7.94499 7.97687 8.86363 8.90492 9.51310 10.57792 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014606 B = 0.003990 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.604085 B = 7016.242672 C = 8680.066978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.219 3.781 3 C -0.161 4.161 4 N -0.735 5.735 5 C 0.565 3.435 6 O -0.513 6.513 7 C -0.226 4.226 8 C -0.042 4.042 9 C -0.221 4.221 10 C -0.051 4.051 11 C -0.227 4.227 12 C 0.202 3.798 13 O -0.165 6.165 14 C -0.396 4.396 15 H 0.108 0.892 16 C 0.071 3.929 17 N -0.870 5.870 18 Si 0.901 3.099 19 H -0.274 1.274 20 H -0.287 1.287 21 H -0.238 1.238 22 C -0.075 4.075 23 C -0.111 4.111 24 C -0.118 4.118 25 C -0.126 4.126 26 C -0.115 4.115 27 C -0.119 4.119 28 H 0.092 0.908 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.393 0.607 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.138 0.862 39 H 0.282 0.718 40 H 0.126 0.874 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.089 -8.418 -18.848 22.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.133 3.867 3 C -0.219 4.219 4 N -0.391 5.391 5 C 0.355 3.645 6 O -0.389 6.389 7 C -0.231 4.231 8 C -0.061 4.061 9 C -0.240 4.240 10 C -0.070 4.070 11 C -0.246 4.246 12 C 0.144 3.856 13 O -0.065 6.065 14 C -0.471 4.471 15 H 0.125 0.875 16 C -0.134 4.134 17 N -0.506 5.506 18 Si 0.726 3.274 19 H -0.200 1.200 20 H -0.214 1.214 21 H -0.160 1.160 22 C -0.076 4.076 23 C -0.129 4.129 24 C -0.136 4.136 25 C -0.144 4.144 26 C -0.134 4.134 27 C -0.137 4.137 28 H 0.110 0.890 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.102 0.898 34 H 0.230 0.770 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.156 0.844 39 H 0.092 0.908 40 H 0.144 0.856 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 7.268 -7.365 -18.762 21.426 hybrid contribution 0.045 -0.167 -0.347 0.388 sum 7.314 -7.532 -19.109 21.803 Atomic orbital electron populations 1.22264 0.93201 1.02479 1.03938 1.18987 0.94372 0.91710 0.81668 1.22273 1.01025 0.95072 1.03573 1.46152 1.52402 1.35581 1.04983 1.18124 0.80419 0.83534 0.82388 1.90782 1.34962 1.27005 1.86102 1.18874 1.10352 1.03055 0.90831 1.20751 0.94308 0.93186 0.97817 1.20532 1.07152 1.03806 0.92482 1.20963 0.94493 0.94608 0.96896 1.21291 1.04024 0.99920 0.99370 1.19007 0.88884 0.85846 0.91836 1.83774 1.52813 1.38119 1.31764 1.20921 1.24066 1.20242 0.81882 0.87504 1.24499 0.94919 0.96275 0.97710 1.69641 1.29701 1.30600 1.20651 0.86189 0.80857 0.77785 0.82607 1.19965 1.21352 1.16031 1.19981 0.98574 0.94129 0.94894 1.21058 0.99535 1.00174 0.92112 1.21140 0.99289 0.94860 0.98273 1.21152 1.00664 0.94739 0.97884 1.21129 0.99487 0.99887 0.92851 1.21002 0.99759 0.94142 0.98824 0.88977 0.92260 0.92729 0.92586 0.91988 0.89759 0.77046 0.87057 0.87036 0.86850 0.84442 0.90845 0.85575 0.86040 0.86218 0.85983 0.85922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 8.33 37.16 0.31 -2.05 16 2 C 0.22 3.00 0.89 -132.97 -0.12 2.89 16 3 C -0.16 -2.26 7.89 37.16 0.29 -1.96 16 4 N -0.73 -10.98 4.80 -49.71 -0.24 -11.22 16 5 C 0.56 11.10 7.18 -12.47 -0.09 11.01 16 6 O -0.51 -11.99 11.38 -16.57 -0.19 -12.17 16 7 C -0.23 -4.53 5.89 -104.81 -0.62 -5.14 16 8 C -0.04 -0.66 9.53 -39.20 -0.37 -1.04 16 9 C -0.22 -3.40 10.02 -39.61 -0.40 -3.80 16 10 C -0.05 -0.87 10.03 -39.54 -0.40 -1.26 16 11 C -0.23 -4.76 9.16 -39.44 -0.36 -5.12 16 12 C 0.20 4.71 6.66 -38.60 -0.26 4.45 16 13 O -0.16 -4.46 6.67 -21.05 -0.14 -4.60 16 14 C -0.40 -11.24 9.95 30.91 0.31 -10.93 16 15 H 0.11 3.03 5.44 -52.49 -0.29 2.74 16 16 C 0.07 2.04 5.49 -17.51 -0.10 1.94 16 17 N -0.87 -25.24 13.96 55.48 0.77 -24.46 16 18 Si 0.90 22.97 28.62 -169.99 -4.86 18.10 16 19 H -0.27 -6.98 7.11 56.52 0.40 -6.57 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.24 -6.31 7.11 56.52 0.40 -5.91 16 22 C -0.08 -0.86 4.80 -104.62 -0.50 -1.37 16 23 C -0.11 -1.13 9.15 -39.58 -0.36 -1.49 16 24 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 25 C -0.13 -1.07 10.05 -39.58 -0.40 -1.47 16 26 C -0.12 -1.04 10.05 -39.58 -0.40 -1.43 16 27 C -0.12 -1.24 9.01 -39.59 -0.36 -1.60 16 28 H 0.09 1.67 5.93 -51.93 -0.31 1.36 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.71 6.52 -51.93 -0.34 0.37 16 33 H 0.08 1.46 6.40 -51.93 -0.33 1.13 16 34 H 0.39 4.86 4.50 -40.82 -0.18 4.68 16 35 H 0.11 1.35 6.40 -52.49 -0.34 1.01 16 36 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 37 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 38 H 0.14 3.00 5.64 -52.49 -0.30 2.70 16 39 H 0.28 7.56 8.31 -40.82 -0.34 7.22 16 40 H 0.13 1.15 6.34 -52.48 -0.33 0.82 16 41 H 0.12 0.81 8.06 -52.48 -0.42 0.38 16 42 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 43 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 44 H 0.12 1.18 6.46 -52.49 -0.34 0.84 16 LS Contribution 357.54 15.07 5.39 5.39 Total: -1.00 -31.98 357.54 -8.75 -40.73 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -5.27 Total: 8.04 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: -4.21 Total: -19.81 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: 0.54 Total: -35.68 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.33 Total: -16.77 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -4.86 Total: 18.10 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.98 -8.75 -40.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921154842.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.082 kcal (2) G-P(sol) polarization free energy of solvation -31.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds