Wall clock time and date at job start Tue Mar 31 2020 14:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47433 * 2 1 4 4 N 1.46499 * 109.47061 * 120.00327 * 2 1 3 5 5 C 1.34778 * 119.99971 * 303.19879 * 4 2 1 6 6 O 1.21592 * 119.99957 * 0.02562 * 5 4 2 7 7 C 1.47534 * 119.99925 * 180.02562 * 5 4 2 8 8 C 1.39663 * 120.20064 * 359.97438 * 7 5 4 9 9 C 1.37824 * 119.92310 * 179.97438 * 8 7 5 10 10 C 1.38572 * 120.32049 * 0.02723 * 9 8 7 11 11 C 1.38023 * 120.40375 * 359.97438 * 10 9 8 12 12 C 1.38832 * 120.07267 * 359.95398 * 11 10 9 13 13 O 1.35519 * 120.16234 * 180.02562 * 12 11 10 14 14 C 1.34813 * 116.99849 * 354.00132 * 13 12 11 15 15 H 1.07995 * 120.00584 * 5.09247 * 14 13 12 16 16 C 1.38708 * 119.99808 * 185.08559 * 14 13 12 17 17 N 1.31518 * 119.99798 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 120.00009 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47212 * 89.99739 * 18 16 14 20 20 H 1.48500 * 109.46839 * 209.99752 * 18 16 14 21 21 H 1.48496 * 109.47136 * 329.99803 * 18 16 14 22 22 C 1.50704 * 109.46705 * 239.99835 * 2 1 3 23 23 C 1.38242 * 119.99910 * 84.48330 * 22 2 1 24 24 C 1.38235 * 119.99866 * 179.76560 * 23 22 2 25 25 C 1.38235 * 119.99781 * 0.50480 * 24 23 22 26 26 C 1.38234 * 120.00304 * 359.74808 * 25 24 23 27 27 C 1.38228 * 120.00143 * 264.75566 * 22 2 1 28 28 H 1.09007 * 109.46459 * 300.00233 * 1 2 3 29 29 H 1.09005 * 109.47080 * 59.99710 * 1 2 3 30 30 H 1.08998 * 109.47450 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47304 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.46744 * 300.00426 * 3 2 1 33 33 H 1.08994 * 109.47273 * 59.99809 * 3 2 1 34 34 H 0.96996 * 120.00086 * 123.20198 * 4 2 1 35 35 H 1.08001 * 120.03738 * 0.28418 * 8 7 5 36 36 H 1.07996 * 119.83916 * 180.02562 * 9 8 7 37 37 H 1.08005 * 119.79616 * 179.97438 * 10 9 8 38 38 H 1.08001 * 119.96681 * 179.97438 * 11 10 9 39 39 H 0.97000 * 119.99428 * 180.02562 * 17 16 14 40 40 H 1.08003 * 119.99646 * 359.97438 * 23 22 2 41 41 H 1.08003 * 119.99770 * 180.23265 * 24 23 22 42 42 H 1.08005 * 119.99775 * 179.72277 * 25 24 23 43 43 H 1.07994 * 120.00176 * 179.97438 * 26 25 24 44 44 H 1.07999 * 120.00255 * 0.02562 * 27 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.6404 -0.2691 2.4192 6 8 0.8938 0.6842 2.5298 7 6 2.1326 -0.9643 3.6238 8 6 2.9899 -2.0600 3.5015 9 6 3.4467 -2.7049 4.6307 10 6 3.0591 -2.2719 5.8887 11 6 2.2124 -1.1905 6.0250 12 6 1.7435 -0.5278 4.8988 13 8 0.9124 0.5345 5.0306 14 6 0.4790 0.8219 6.2743 15 1 0.8593 0.2685 7.1201 16 6 -0.4555 1.8286 6.4678 17 7 -0.8779 2.1093 7.6812 18 14 -1.1138 2.7856 5.0048 19 1 -2.3226 2.1068 4.4727 20 1 -1.4676 4.1628 5.4330 21 1 -0.0746 2.8479 3.9459 22 6 2.0323 -0.7105 -1.2305 23 6 2.1541 -0.0235 -2.4240 24 6 2.6194 -0.6740 -3.5515 25 6 2.9529 -2.0140 -3.4881 26 6 2.8261 -2.7022 -2.2960 27 6 2.3658 -2.0504 -1.1672 28 1 -0.3632 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9563 0.8899 34 1 2.6137 -1.4513 1.1079 35 1 3.2985 -2.3985 2.5235 36 1 4.1099 -3.5518 4.5346 37 1 3.4219 -2.7838 6.7678 38 1 1.9145 -0.8593 7.0088 39 1 -1.5317 2.8130 7.8164 40 1 1.8889 1.0222 -2.4745 41 1 2.7181 -0.1363 -4.4829 42 1 3.3122 -2.5233 -4.3701 43 1 3.0863 -3.7492 -2.2466 44 1 2.2660 -2.5884 -0.2360 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921154842.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:06 Heat of formation + Delta-G solvation = -19.956472 kcal Electronic energy + Delta-G solvation = -27425.146163 eV Core-core repulsion = 23693.757882 eV Total energy + Delta-G solvation = -3731.388281 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.74455 -40.78256 -39.57989 -38.17979 -36.80133 -34.51915 -33.70525 -31.95900 -31.42519 -30.79957 -30.39458 -28.29611 -27.30422 -25.31157 -24.13246 -23.29493 -22.95684 -21.69094 -20.58130 -19.79688 -19.69008 -18.41081 -17.48867 -16.97934 -16.52543 -16.14270 -16.01087 -15.86169 -15.72906 -15.48361 -15.41612 -15.23446 -14.69740 -14.58372 -14.50164 -14.28324 -14.21245 -14.01307 -13.45200 -13.20976 -13.14314 -12.97301 -12.81105 -12.75232 -12.58267 -12.39007 -12.29140 -12.01103 -11.92064 -11.67014 -11.47954 -10.96963 -10.46677 -10.20112 -9.86262 -9.80248 -9.59056 -9.14584 -8.57842 -6.26382 0.06124 0.41965 0.51744 0.64744 1.24722 1.30099 1.58272 2.05742 2.19291 2.29461 2.76300 2.89782 3.02252 3.17532 3.48644 3.86194 3.92129 4.00735 4.09325 4.17706 4.18554 4.26102 4.32236 4.47710 4.51763 4.60885 4.62495 4.67823 4.76358 4.80905 4.84521 4.86281 5.04190 5.07381 5.17723 5.21821 5.28370 5.31418 5.47517 5.50475 5.58642 5.62471 5.65425 5.69340 5.76519 5.83825 6.11529 6.15441 6.66947 6.79544 7.43685 7.59375 8.52714 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014606 B = 0.003990 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.604085 B = 7016.242672 C = 8680.066978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.219 3.781 3 C -0.157 4.157 4 N -0.713 5.713 5 C 0.558 3.442 6 O -0.556 6.556 7 C -0.233 4.233 8 C -0.033 4.033 9 C -0.189 4.189 10 C -0.043 4.043 11 C -0.251 4.251 12 C 0.163 3.837 13 O -0.207 6.207 14 C -0.401 4.401 15 H 0.091 0.909 16 C 0.026 3.974 17 N -0.913 5.913 18 Si 0.957 3.043 19 H -0.277 1.277 20 H -0.268 1.268 21 H -0.263 1.263 22 C -0.090 4.090 23 C -0.120 4.120 24 C -0.120 4.120 25 C -0.125 4.125 26 C -0.117 4.117 27 C -0.130 4.130 28 H 0.051 0.949 29 H 0.078 0.922 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.085 0.915 33 H 0.042 0.958 34 H 0.408 0.592 35 H 0.161 0.839 36 H 0.166 0.834 37 H 0.151 0.849 38 H 0.115 0.885 39 H 0.285 0.715 40 H 0.131 0.869 41 H 0.144 0.856 42 H 0.145 0.855 43 H 0.145 0.855 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.966 -11.888 -22.566 27.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.133 3.867 3 C -0.215 4.215 4 N -0.369 5.369 5 C 0.348 3.652 6 O -0.435 6.435 7 C -0.238 4.238 8 C -0.052 4.052 9 C -0.207 4.207 10 C -0.061 4.061 11 C -0.270 4.270 12 C 0.110 3.890 13 O -0.111 6.111 14 C -0.478 4.478 15 H 0.108 0.892 16 C -0.174 4.174 17 N -0.553 5.553 18 Si 0.781 3.219 19 H -0.203 1.203 20 H -0.193 1.193 21 H -0.187 1.187 22 C -0.091 4.091 23 C -0.138 4.138 24 C -0.138 4.138 25 C -0.143 4.143 26 C -0.135 4.135 27 C -0.148 4.148 28 H 0.070 0.930 29 H 0.097 0.903 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.104 0.896 33 H 0.062 0.938 34 H 0.247 0.753 35 H 0.178 0.822 36 H 0.184 0.816 37 H 0.168 0.832 38 H 0.132 0.868 39 H 0.095 0.905 40 H 0.149 0.851 41 H 0.161 0.839 42 H 0.163 0.837 43 H 0.163 0.837 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 10.199 -10.895 -22.520 27.016 hybrid contribution -0.522 0.516 0.555 0.920 sum 9.677 -10.380 -21.964 26.150 Atomic orbital electron populations 1.22189 0.94301 1.02207 1.02839 1.19016 0.93646 0.91783 0.82234 1.22213 1.01254 0.95360 1.02704 1.45961 1.51493 1.35450 1.03996 1.18277 0.80115 0.83112 0.83683 1.90789 1.36889 1.28931 1.86867 1.19331 1.10561 1.04056 0.89819 1.21317 0.92155 0.90991 1.00709 1.21216 1.04974 1.03519 0.90970 1.21434 0.92431 0.92691 0.99573 1.21338 1.05960 1.01878 0.97841 1.19730 0.89052 0.86096 0.94125 1.83764 1.55921 1.41066 1.30346 1.20884 1.24186 1.20147 0.82550 0.89189 1.25044 0.95642 0.97365 0.99399 1.69687 1.31695 1.32354 1.21549 0.85390 0.79213 0.77721 0.79601 1.20292 1.19294 1.18703 1.19742 1.00593 0.94771 0.93944 1.21202 0.99820 1.00622 0.92196 1.21442 0.98421 0.95335 0.98599 1.21540 0.99425 0.94661 0.98675 1.21427 0.98663 1.01029 0.92392 1.21133 1.00136 0.93684 0.99836 0.93025 0.90341 0.92504 0.92005 0.89621 0.93850 0.75272 0.82205 0.81632 0.83178 0.86755 0.90499 0.85113 0.83857 0.83691 0.83682 0.85404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.67 8.33 71.98 0.60 -4.07 16 2 C 0.22 5.83 0.89 2.86 0.00 5.84 16 3 C -0.16 -4.42 7.89 71.98 0.57 -3.85 16 4 N -0.71 -20.41 4.80 -429.45 -2.06 -22.47 16 5 C 0.56 22.26 7.18 86.69 0.62 22.88 16 6 O -0.56 -27.62 11.38 16.89 0.19 -27.43 16 7 C -0.23 -9.20 5.89 -19.99 -0.12 -9.32 16 8 C -0.03 -0.92 9.53 22.52 0.21 -0.70 16 9 C -0.19 -4.71 10.02 22.25 0.22 -4.49 16 10 C -0.04 -1.33 10.03 22.30 0.22 -1.10 16 11 C -0.25 -10.74 9.16 22.36 0.20 -10.54 16 12 C 0.16 7.91 6.66 22.91 0.15 8.06 16 13 O -0.21 -12.03 6.67 0.86 0.01 -12.03 16 14 C -0.40 -24.63 9.95 67.93 0.68 -23.95 16 15 H 0.09 5.60 5.44 -2.91 -0.02 5.58 16 16 C 0.03 1.56 5.49 84.85 0.47 2.03 16 17 N -0.91 -56.28 13.96 21.62 0.30 -55.98 16 18 Si 0.96 51.10 28.62 68.60 1.96 53.07 16 19 H -0.28 -14.64 7.11 99.48 0.71 -13.93 16 20 H -0.27 -13.17 7.11 99.48 0.71 -12.46 16 21 H -0.26 -14.96 7.11 99.48 0.71 -14.25 16 22 C -0.09 -1.85 4.80 -19.86 -0.10 -1.94 16 23 C -0.12 -2.12 9.15 22.27 0.20 -1.91 16 24 C -0.12 -1.67 10.05 22.27 0.22 -1.44 16 25 C -0.13 -1.56 10.05 22.27 0.22 -1.34 16 26 C -0.12 -1.59 10.05 22.27 0.22 -1.37 16 27 C -0.13 -2.25 9.01 22.27 0.20 -2.05 16 28 H 0.05 1.98 5.93 -2.38 -0.01 1.96 16 29 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 30 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.09 1.92 6.52 -2.38 -0.02 1.91 16 33 H 0.04 1.59 6.40 -2.39 -0.02 1.57 16 34 H 0.41 8.78 4.50 -92.71 -0.42 8.37 16 35 H 0.16 2.84 6.40 -2.91 -0.02 2.82 16 36 H 0.17 2.59 8.06 -2.91 -0.02 2.57 16 37 H 0.15 3.54 8.06 -2.91 -0.02 3.51 16 38 H 0.11 5.37 5.64 -2.91 -0.02 5.35 16 39 H 0.29 16.21 8.31 -92.71 -0.77 15.44 16 40 H 0.13 2.08 6.34 -2.91 -0.02 2.06 16 41 H 0.14 1.31 8.06 -2.91 -0.02 1.29 16 42 H 0.15 1.06 8.06 -2.91 -0.02 1.04 16 43 H 0.15 1.26 8.06 -2.91 -0.02 1.23 16 44 H 0.13 1.96 6.46 -2.91 -0.02 1.94 16 Total: -1.00 -78.82 357.54 5.84 -72.98 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: 0.62 Total: 21.12 kcal Atomic # 6 Polarization: -34.07 SS G_CDS: 4.82 Total: -29.25 kcal Atomic # 7 Polarization: -76.69 SS G_CDS: -1.76 Total: -78.45 kcal Atomic # 8 Polarization: -39.66 SS G_CDS: 0.20 Total: -39.46 kcal Atomic # 14 Polarization: 51.10 SS G_CDS: 1.96 Total: 53.07 kcal Total: -78.82 5.84 -72.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921154842.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.020 kcal (2) G-P(sol) polarization free energy of solvation -78.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds