Wall clock time and date at job start Tue Mar 31 2020 14:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99981 * 2 1 4 4 C 1.53001 * 109.47227 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47220 * 64.99726 * 4 3 2 6 6 C 1.46498 * 120.00175 * 262.35990 * 5 4 3 7 7 C 1.50697 * 109.47132 * 270.00103 * 6 5 4 8 8 H 1.07999 * 120.00292 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99855 * 179.97438 * 7 6 5 10 10 N 1.31519 * 120.00050 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 120.00151 * 359.97438 * 9 7 6 12 12 H 1.48505 * 109.46878 * 89.99904 * 11 9 7 13 13 H 1.48500 * 109.47211 * 209.99778 * 11 9 7 14 14 H 1.48496 * 109.47245 * 329.99964 * 11 9 7 15 15 C 1.34774 * 119.99898 * 82.35856 * 5 4 3 16 16 O 1.21694 * 120.00092 * 182.20005 * 15 5 4 17 17 C 1.46582 * 120.00104 * 2.20372 * 15 5 4 18 18 C 1.36647 * 125.46390 * 172.23591 * 17 15 5 19 19 C 1.37469 * 113.30107 * 179.97438 * 18 17 15 20 20 C 1.33811 * 115.10034 * 359.97438 * 19 18 17 21 21 C 1.50701 * 124.52118 * 179.97438 * 20 19 18 22 22 C 1.52999 * 109.47487 * 89.99731 * 21 20 19 23 23 C 1.52995 * 109.47338 * 184.99867 * 22 21 20 24 24 C 1.53002 * 109.46830 * 65.00151 * 22 21 20 25 25 S 1.70619 * 110.95713 * 0.22985 * 20 19 18 26 26 H 1.08994 * 109.47400 * 59.99792 * 1 2 3 27 27 H 1.08998 * 109.47241 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46679 * 299.99909 * 1 2 3 29 29 H 1.08997 * 109.47220 * 60.00201 * 3 2 1 30 30 H 1.09001 * 109.47266 * 300.00460 * 3 2 1 31 31 H 1.09008 * 109.46985 * 305.00201 * 4 3 2 32 32 H 1.08997 * 109.47487 * 185.00416 * 4 3 2 33 33 H 1.09003 * 109.47135 * 29.99949 * 6 5 4 34 34 H 1.08997 * 109.47250 * 149.99896 * 6 5 4 35 35 H 0.96997 * 119.99947 * 180.02562 * 10 9 7 36 36 H 1.08003 * 123.34317 * 359.97438 * 18 17 15 37 37 H 1.07996 * 122.44747 * 180.02562 * 19 18 17 38 38 H 1.09000 * 109.47236 * 329.99517 * 21 20 19 39 39 H 1.09005 * 109.46736 * 209.99712 * 21 20 19 40 40 H 1.09000 * 109.47211 * 305.00394 * 22 21 20 41 41 H 1.09000 * 109.47400 * 300.00412 * 23 22 21 42 42 H 1.09001 * 109.47358 * 60.00028 * 23 22 21 43 43 H 1.09000 * 109.47279 * 180.02562 * 23 22 21 44 44 H 1.09003 * 109.47056 * 299.99818 * 24 22 21 45 45 H 1.08995 * 109.47726 * 60.00135 * 24 22 21 46 46 H 1.09004 * 109.46650 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.2665 -0.8708 -1.2966 7 6 5.7190 -1.0993 -0.9665 8 1 6.3614 -0.2595 -0.7465 9 6 6.2279 -2.3807 -0.9454 10 7 7.4956 -2.5801 -0.6579 11 14 5.1166 -3.8333 -1.3252 12 1 5.1469 -4.1116 -2.7837 13 1 5.5929 -5.0282 -0.5833 14 1 3.7266 -3.5149 -0.9108 15 6 4.1131 1.3140 -2.3643 16 8 4.4401 0.7919 -3.4138 17 6 3.8689 2.7583 -2.3090 18 6 4.1174 3.6436 -3.3198 19 6 3.7939 4.9405 -2.9986 20 6 3.2970 5.1135 -1.7682 21 6 2.8737 6.4423 -1.1972 22 6 1.3968 6.6863 -1.5136 23 6 0.9993 8.0871 -1.0440 24 6 0.5414 5.6441 -0.7905 25 16 3.2132 3.6299 -0.9298 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 1.6886 1.8463 0.8900 30 1 1.6885 1.8464 -0.8899 31 1 3.8515 0.5681 0.8410 32 1 3.9785 2.1764 0.0890 33 1 3.6426 -1.3904 -0.5693 34 1 4.0562 -1.2538 -2.2952 35 1 7.8537 -3.4815 -0.6434 36 1 4.5273 3.3532 -4.2759 37 1 3.9301 5.7597 -3.6890 38 1 3.4759 7.2361 -1.6391 39 1 3.0175 6.4358 -0.1167 40 1 1.2373 6.6046 -2.5888 41 1 1.1588 8.1688 0.0312 42 1 1.6087 8.8296 -1.5591 43 1 -0.0530 8.2607 -1.2690 44 1 0.8247 4.6461 -1.1251 45 1 0.7009 5.7256 0.2846 46 1 -0.5107 5.8176 -1.0163 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931894420.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:17 Heat of formation + Delta-G solvation = -52.543163 kcal Electronic energy + Delta-G solvation = -26230.066023 eV Core-core repulsion = 22632.708628 eV Total energy + Delta-G solvation = -3597.357395 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.40025 -38.31938 -37.55844 -36.04523 -35.00013 -32.66994 -30.84325 -29.91763 -28.13993 -27.46341 -26.47252 -26.11286 -23.74007 -22.89797 -22.45580 -20.58942 -19.97172 -18.23101 -17.67259 -16.89945 -16.47663 -16.12333 -15.57491 -15.50438 -15.08639 -15.00228 -14.65699 -14.43386 -14.11001 -13.84070 -13.60611 -13.29755 -12.76061 -12.66180 -12.56999 -12.35709 -12.33060 -12.18394 -12.09681 -11.86966 -11.76199 -11.54704 -11.22912 -11.12688 -11.02447 -10.97094 -10.90927 -10.45118 -10.30711 -10.08006 -9.61239 -9.51359 -9.22457 -8.53016 -8.50381 -8.27919 -7.73535 -6.03549 -4.02130 0.72115 1.62002 2.05707 2.61171 3.35263 3.41149 3.45301 3.65149 3.80782 3.86768 4.46072 4.48865 4.58896 4.64001 4.87149 5.05516 5.09959 5.16268 5.27557 5.31250 5.31690 5.32555 5.37764 5.41014 5.41780 5.45968 5.49081 5.52995 5.59548 5.66330 5.70665 5.71849 5.86203 5.99589 6.03328 6.05561 6.14884 6.30314 6.53235 6.86891 7.03239 7.23808 7.30126 7.66612 8.17490 8.50593 8.86692 8.99837 9.56802 11.09739 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.017690 B = 0.003810 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.446993 B = 7348.036258 C = 8282.688869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.374 6.374 3 C 0.036 3.964 4 C 0.101 3.899 5 N -0.577 5.577 6 C 0.222 3.778 7 C -0.531 4.531 8 H 0.074 0.926 9 C 0.074 3.926 10 N -0.898 5.898 11 Si 0.874 3.126 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.262 1.262 15 C 0.578 3.422 16 O -0.527 6.527 17 C -0.252 4.252 18 C -0.063 4.063 19 C -0.150 4.150 20 C -0.232 4.232 21 C -0.044 4.044 22 C -0.092 4.092 23 C -0.147 4.147 24 C -0.156 4.156 25 S 0.214 5.786 26 H 0.038 0.962 27 H 0.084 0.916 28 H 0.038 0.962 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.111 0.889 32 H 0.088 0.912 33 H 0.042 0.958 34 H 0.037 0.963 35 H 0.264 0.736 36 H 0.149 0.851 37 H 0.134 0.866 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.055 0.945 42 H 0.054 0.946 43 H 0.055 0.945 44 H 0.060 0.940 45 H 0.055 0.945 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.233 19.293 2.865 25.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.293 6.293 3 C -0.042 4.042 4 C -0.026 4.026 5 N -0.307 5.307 6 C 0.102 3.898 7 C -0.569 4.569 8 H 0.092 0.908 9 C -0.129 4.129 10 N -0.537 5.537 11 Si 0.700 3.300 12 H -0.200 1.200 13 H -0.211 1.211 14 H -0.186 1.186 15 C 0.364 3.636 16 O -0.405 6.405 17 C -0.373 4.373 18 C -0.095 4.095 19 C -0.180 4.180 20 C -0.350 4.350 21 C -0.083 4.083 22 C -0.111 4.111 23 C -0.204 4.204 24 C -0.213 4.213 25 S 0.483 5.517 26 H 0.056 0.944 27 H 0.103 0.897 28 H 0.057 0.943 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.129 0.871 32 H 0.105 0.895 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.074 0.926 36 H 0.167 0.833 37 H 0.152 0.848 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.074 0.926 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.274 18.280 3.771 24.763 hybrid contribution -0.032 0.011 -1.626 1.627 sum -16.306 18.291 2.145 24.598 Atomic orbital electron populations 1.22723 0.81680 1.02652 0.99498 1.88038 1.19043 1.26959 1.95235 1.23392 0.94698 0.85497 1.00629 1.21860 0.91690 0.98752 0.90285 1.47699 1.64538 1.11076 1.07399 1.19728 0.97015 0.74850 0.98239 1.21361 0.93356 0.94351 1.47834 0.90769 1.24822 0.94929 0.98644 0.94469 1.69901 1.12952 1.21785 1.49065 0.86875 0.81674 0.82355 0.79071 1.19957 1.21135 1.18607 1.16952 0.78313 0.83853 0.84471 1.90794 1.47829 1.72382 1.29535 1.24944 1.14223 0.98533 0.99561 1.20692 0.97994 0.91332 0.99481 1.19848 1.04266 0.97283 0.96624 1.24840 1.06764 1.03174 1.00251 1.20233 0.95918 0.91654 1.00484 1.21110 0.93848 0.95302 1.00832 1.21840 1.01287 0.95944 1.01336 1.21990 0.99537 0.99407 1.00388 1.83622 1.59000 0.94177 1.14908 0.94382 0.89738 0.94326 0.92046 0.92677 0.87127 0.89530 0.93991 0.94503 0.92608 0.83292 0.84826 0.90369 0.90863 0.90877 0.92590 0.92644 0.92557 0.92059 0.92557 0.92590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.47 16 2 O -0.37 -5.96 10.46 -35.23 -0.37 -6.33 16 3 C 0.04 0.50 4.80 37.16 0.18 0.68 16 4 C 0.10 1.68 5.34 -4.04 -0.02 1.66 16 5 N -0.58 -12.53 2.42 -176.64 -0.43 -12.96 16 6 C 0.22 5.64 4.21 -5.20 -0.02 5.62 16 7 C -0.53 -15.58 9.94 -34.44 -0.34 -15.92 16 8 H 0.07 2.37 8.06 -52.49 -0.42 1.95 16 9 C 0.07 2.19 5.47 -17.82 -0.10 2.09 16 10 N -0.90 -28.12 13.96 55.43 0.77 -27.34 16 11 Si 0.87 22.10 27.47 -169.99 -4.67 17.43 16 12 H -0.27 -6.97 7.11 56.52 0.40 -6.56 16 13 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 14 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 15 C 0.58 12.73 7.55 -12.90 -0.10 12.63 16 16 O -0.53 -13.69 16.42 5.19 0.09 -13.60 16 17 C -0.25 -4.33 6.07 -36.79 -0.22 -4.56 16 18 C -0.06 -0.96 10.02 -40.44 -0.41 -1.37 16 19 C -0.15 -1.85 9.99 -41.42 -0.41 -2.26 16 20 C -0.23 -2.62 4.90 -35.86 -0.18 -2.79 16 21 C -0.04 -0.37 5.12 -27.88 -0.14 -0.51 16 22 C -0.09 -0.70 2.91 -90.62 -0.26 -0.96 16 23 C -0.15 -0.90 9.19 37.15 0.34 -0.56 16 24 C -0.16 -1.21 8.88 37.16 0.33 -0.88 16 25 S 0.21 2.66 13.85 -107.50 -1.49 1.18 16 26 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.75 6.23 -49.76 -0.31 0.44 16 31 H 0.11 1.88 8.02 -51.92 -0.42 1.47 16 32 H 0.09 1.29 4.45 -22.02 -0.10 1.19 16 33 H 0.04 1.04 6.94 -51.93 -0.36 0.68 16 34 H 0.04 1.01 6.82 -51.93 -0.35 0.65 16 35 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 36 H 0.15 2.29 8.06 -52.48 -0.42 1.87 16 37 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.06 0.55 6.14 -51.93 -0.32 0.23 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 379.53 15.07 5.72 5.72 Total: -1.00 -35.18 379.53 -7.99 -43.16 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -7.37 Total: -1.61 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -0.24 Total: -5.65 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 0.35 Total: -40.30 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.28 Total: -19.93 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.67 Total: 17.43 kcal Atomic # 16 Polarization: 2.66 SS G_CDS: -1.49 Total: 1.18 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.18 -7.99 -43.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931894420.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.378 kcal (2) G-P(sol) polarization free energy of solvation -35.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds