Wall clock time and date at job start Tue Mar 31 2020 14:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99981 * 2 1 4 4 C 1.53001 * 109.47227 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47220 * 64.99726 * 4 3 2 6 6 C 1.46498 * 120.00175 * 262.35990 * 5 4 3 7 7 C 1.50697 * 109.47132 * 270.00103 * 6 5 4 8 8 H 1.07999 * 120.00292 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99855 * 179.97438 * 7 6 5 10 10 N 1.31519 * 120.00050 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 120.00151 * 359.97438 * 9 7 6 12 12 H 1.48505 * 109.46878 * 89.99904 * 11 9 7 13 13 H 1.48500 * 109.47211 * 209.99778 * 11 9 7 14 14 H 1.48496 * 109.47245 * 329.99964 * 11 9 7 15 15 C 1.34774 * 119.99898 * 82.35856 * 5 4 3 16 16 O 1.21694 * 120.00092 * 182.20005 * 15 5 4 17 17 C 1.46582 * 120.00104 * 2.20372 * 15 5 4 18 18 C 1.36647 * 125.46390 * 172.23591 * 17 15 5 19 19 C 1.37469 * 113.30107 * 179.97438 * 18 17 15 20 20 C 1.33811 * 115.10034 * 359.97438 * 19 18 17 21 21 C 1.50701 * 124.52118 * 179.97438 * 20 19 18 22 22 C 1.52999 * 109.47487 * 89.99731 * 21 20 19 23 23 C 1.52995 * 109.47338 * 184.99867 * 22 21 20 24 24 C 1.53002 * 109.46830 * 65.00151 * 22 21 20 25 25 S 1.70619 * 110.95713 * 0.22985 * 20 19 18 26 26 H 1.08994 * 109.47400 * 59.99792 * 1 2 3 27 27 H 1.08998 * 109.47241 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46679 * 299.99909 * 1 2 3 29 29 H 1.08997 * 109.47220 * 60.00201 * 3 2 1 30 30 H 1.09001 * 109.47266 * 300.00460 * 3 2 1 31 31 H 1.09008 * 109.46985 * 305.00201 * 4 3 2 32 32 H 1.08997 * 109.47487 * 185.00416 * 4 3 2 33 33 H 1.09003 * 109.47135 * 29.99949 * 6 5 4 34 34 H 1.08997 * 109.47250 * 149.99896 * 6 5 4 35 35 H 0.96997 * 119.99947 * 180.02562 * 10 9 7 36 36 H 1.08003 * 123.34317 * 359.97438 * 18 17 15 37 37 H 1.07996 * 122.44747 * 180.02562 * 19 18 17 38 38 H 1.09000 * 109.47236 * 329.99517 * 21 20 19 39 39 H 1.09005 * 109.46736 * 209.99712 * 21 20 19 40 40 H 1.09000 * 109.47211 * 305.00394 * 22 21 20 41 41 H 1.09000 * 109.47400 * 300.00412 * 23 22 21 42 42 H 1.09001 * 109.47358 * 60.00028 * 23 22 21 43 43 H 1.09000 * 109.47279 * 180.02562 * 23 22 21 44 44 H 1.09003 * 109.47056 * 299.99818 * 24 22 21 45 45 H 1.08995 * 109.47726 * 60.00135 * 24 22 21 46 46 H 1.09004 * 109.46650 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.2665 -0.8708 -1.2966 7 6 5.7190 -1.0993 -0.9665 8 1 6.3614 -0.2595 -0.7465 9 6 6.2279 -2.3807 -0.9454 10 7 7.4956 -2.5801 -0.6579 11 14 5.1166 -3.8333 -1.3252 12 1 5.1469 -4.1116 -2.7837 13 1 5.5929 -5.0282 -0.5833 14 1 3.7266 -3.5149 -0.9108 15 6 4.1131 1.3140 -2.3643 16 8 4.4401 0.7919 -3.4138 17 6 3.8689 2.7583 -2.3090 18 6 4.1174 3.6436 -3.3198 19 6 3.7939 4.9405 -2.9986 20 6 3.2970 5.1135 -1.7682 21 6 2.8737 6.4423 -1.1972 22 6 1.3968 6.6863 -1.5136 23 6 0.9993 8.0871 -1.0440 24 6 0.5414 5.6441 -0.7905 25 16 3.2132 3.6299 -0.9298 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 1.6886 1.8463 0.8900 30 1 1.6885 1.8464 -0.8899 31 1 3.8515 0.5681 0.8410 32 1 3.9785 2.1764 0.0890 33 1 3.6426 -1.3904 -0.5693 34 1 4.0562 -1.2538 -2.2952 35 1 7.8537 -3.4815 -0.6434 36 1 4.5273 3.3532 -4.2759 37 1 3.9301 5.7597 -3.6890 38 1 3.4759 7.2361 -1.6391 39 1 3.0175 6.4358 -0.1167 40 1 1.2373 6.6046 -2.5888 41 1 1.1588 8.1688 0.0312 42 1 1.6087 8.8296 -1.5591 43 1 -0.0530 8.2607 -1.2690 44 1 0.8247 4.6461 -1.1251 45 1 0.7009 5.7256 0.2846 46 1 -0.5107 5.8176 -1.0163 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931894420.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:16 Heat of formation + Delta-G solvation = -75.552987 kcal Electronic energy + Delta-G solvation = -26231.063804 eV Core-core repulsion = 22632.708628 eV Total energy + Delta-G solvation = -3598.355176 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.98493 -39.32564 -38.70648 -36.90908 -36.61708 -34.84759 -32.21191 -31.17963 -29.74237 -27.97419 -27.69476 -27.17662 -25.00288 -24.24727 -23.99765 -21.58424 -21.11789 -19.42944 -19.17309 -19.02260 -17.63356 -17.30858 -16.91153 -16.75855 -16.40948 -16.18737 -15.83890 -15.55906 -15.32448 -15.15456 -14.67295 -14.49938 -14.47555 -13.97063 -13.81255 -13.63153 -13.33910 -13.19979 -13.09842 -13.03213 -12.87238 -12.78399 -12.61116 -12.49239 -12.11783 -12.05519 -11.83989 -11.77097 -11.75262 -11.54394 -11.34431 -10.97495 -10.83774 -10.62815 -9.77336 -9.41633 -9.28079 -8.35501 -6.40558 -0.45815 0.48742 0.99210 1.31869 1.35256 1.45171 1.45832 2.07860 2.27071 2.30691 2.80642 2.98669 3.53058 3.74483 3.94942 4.01480 4.06206 4.07703 4.19976 4.30130 4.38088 4.43866 4.47319 4.52832 4.59073 4.74409 4.75111 4.79886 4.83303 4.87358 4.88638 4.89760 4.99310 5.06149 5.08670 5.16947 5.24862 5.33599 5.41382 5.43178 5.49670 5.50831 5.56031 6.20546 6.23695 6.53127 6.59710 7.13611 7.27391 8.81361 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.017690 B = 0.003810 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.446993 B = 7348.036258 C = 8282.688869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.042 3.958 4 C 0.091 3.909 5 N -0.586 5.586 6 C 0.237 3.763 7 C -0.539 4.539 8 H 0.030 0.970 9 C 0.016 3.984 10 N -0.942 5.942 11 Si 0.944 3.056 12 H -0.276 1.276 13 H -0.270 1.270 14 H -0.241 1.241 15 C 0.569 3.431 16 O -0.588 6.588 17 C -0.310 4.310 18 C -0.056 4.056 19 C -0.162 4.162 20 C -0.207 4.207 21 C -0.046 4.046 22 C -0.090 4.090 23 C -0.144 4.144 24 C -0.160 4.160 25 S 0.270 5.730 26 H 0.043 0.957 27 H 0.088 0.912 28 H 0.066 0.934 29 H 0.105 0.895 30 H 0.057 0.943 31 H 0.103 0.897 32 H 0.105 0.895 33 H 0.054 0.946 34 H 0.015 0.985 35 H 0.270 0.730 36 H 0.136 0.864 37 H 0.161 0.839 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.046 0.954 45 H 0.066 0.934 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.097 21.656 4.396 29.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.332 6.332 3 C -0.035 4.035 4 C -0.033 4.033 5 N -0.315 5.315 6 C 0.115 3.885 7 C -0.578 4.578 8 H 0.048 0.952 9 C -0.183 4.183 10 N -0.582 5.582 11 Si 0.767 3.233 12 H -0.202 1.202 13 H -0.195 1.195 14 H -0.164 1.164 15 C 0.359 3.641 16 O -0.471 6.471 17 C -0.429 4.429 18 C -0.090 4.090 19 C -0.191 4.191 20 C -0.326 4.326 21 C -0.085 4.085 22 C -0.109 4.109 23 C -0.201 4.201 24 C -0.217 4.217 25 S 0.541 5.459 26 H 0.061 0.939 27 H 0.107 0.893 28 H 0.084 0.916 29 H 0.123 0.877 30 H 0.075 0.925 31 H 0.121 0.879 32 H 0.122 0.878 33 H 0.072 0.928 34 H 0.033 0.967 35 H 0.079 0.921 36 H 0.154 0.846 37 H 0.178 0.822 38 H 0.113 0.887 39 H 0.106 0.894 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.065 0.935 45 H 0.085 0.915 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -19.170 20.674 5.356 28.698 hybrid contribution 0.872 -0.521 -2.067 2.303 sum -18.298 20.153 3.289 27.418 Atomic orbital electron populations 1.22927 0.79478 1.03577 1.01074 1.87973 1.21562 1.28076 1.95576 1.23367 0.92080 0.85441 1.02655 1.22200 0.94336 0.99180 0.87614 1.47719 1.64606 1.09841 1.09332 1.19286 0.94496 0.77825 0.96884 1.21552 0.95008 0.93356 1.47854 0.95163 1.25779 0.96536 1.01930 0.94013 1.70039 1.15023 1.22924 1.50248 0.85763 0.80452 0.78410 0.78698 1.20158 1.19503 1.16421 1.17632 0.76997 0.85909 0.83565 1.90726 1.50710 1.74171 1.31533 1.24549 1.18783 0.96346 1.03271 1.20866 0.96871 0.92623 0.98684 1.19969 1.04893 0.96425 0.97777 1.25311 1.03741 1.04024 0.99493 1.20441 0.96785 0.89949 1.01343 1.21094 0.92959 0.96298 1.00536 1.21810 1.01654 0.94851 1.01779 1.22036 1.00074 0.98568 1.01061 1.83115 1.57206 0.93400 1.12219 0.93853 0.89314 0.91587 0.87708 0.92548 0.87896 0.87848 0.92850 0.96727 0.92145 0.84607 0.82187 0.88729 0.89394 0.91540 0.91930 0.92086 0.92174 0.93460 0.91501 0.91932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 113.37 1.25 1.77 16 2 O -0.41 -12.51 10.46 -148.98 -1.56 -14.07 16 3 C 0.04 1.09 4.80 71.98 0.35 1.44 16 4 C 0.09 3.03 5.34 86.38 0.46 3.49 16 5 N -0.59 -26.46 2.42 -830.99 -2.01 -28.48 16 6 C 0.24 12.53 4.21 85.63 0.36 12.89 16 7 C -0.54 -33.30 9.94 25.60 0.25 -33.04 16 8 H 0.03 2.07 8.06 -2.91 -0.02 2.04 16 9 C 0.02 0.97 5.47 84.65 0.46 1.43 16 10 N -0.94 -61.05 13.96 21.45 0.30 -60.75 16 11 Si 0.94 46.51 27.47 68.60 1.88 48.40 16 12 H -0.28 -13.63 7.11 99.48 0.71 -12.93 16 13 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 14 H -0.24 -10.97 6.54 99.48 0.65 -10.32 16 15 C 0.57 26.50 7.55 86.42 0.65 27.15 16 16 O -0.59 -32.89 16.42 -4.33 -0.07 -32.96 16 17 C -0.31 -10.86 6.07 24.08 0.15 -10.71 16 18 C -0.06 -1.75 10.02 21.72 0.22 -1.53 16 19 C -0.16 -3.67 9.99 21.08 0.21 -3.46 16 20 C -0.21 -4.04 4.90 24.68 0.12 -3.92 16 21 C -0.05 -0.58 5.12 29.85 0.15 -0.43 16 22 C -0.09 -1.02 2.91 -10.79 -0.03 -1.05 16 23 C -0.14 -1.19 9.19 71.98 0.66 -0.53 16 24 C -0.16 -1.90 8.88 71.98 0.64 -1.26 16 25 S 0.27 6.19 13.85 -56.49 -0.78 5.41 16 26 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 29 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.06 1.44 6.23 -3.76 -0.02 1.42 16 31 H 0.10 3.53 8.02 -2.38 -0.02 3.51 16 32 H 0.10 2.99 4.45 -21.40 -0.10 2.90 16 33 H 0.05 2.68 6.94 -2.39 -0.02 2.67 16 34 H 0.01 0.84 6.82 -2.39 -0.02 0.82 16 35 H 0.27 16.16 8.31 -92.71 -0.77 15.39 16 36 H 0.14 4.45 8.06 -2.91 -0.02 4.43 16 37 H 0.16 2.76 8.06 -2.91 -0.02 2.74 16 38 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.09 0.93 8.14 -2.38 -0.02 0.92 16 40 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.06 0.45 8.14 -2.39 -0.02 0.44 16 42 H 0.06 0.45 8.14 -2.39 -0.02 0.44 16 43 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 44 H 0.05 0.69 6.14 -2.39 -0.01 0.68 16 45 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 46 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 Total: -1.00 -82.60 379.53 4.47 -78.13 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: 0.81 Total: 12.08 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: 5.90 Total: -7.76 kcal Atomic # 7 Polarization: -87.51 SS G_CDS: -1.71 Total: -89.23 kcal Atomic # 8 Polarization: -45.40 SS G_CDS: -1.63 Total: -47.03 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 1.88 Total: 48.40 kcal Atomic # 16 Polarization: 6.19 SS G_CDS: -0.78 Total: 5.41 kcal Total: -82.60 4.47 -78.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931894420.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.577 kcal (2) G-P(sol) polarization free energy of solvation -82.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds