Wall clock time and date at job start Tue Mar 31 2020 14:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47337 * 2 1 4 4 C 1.50698 * 109.47305 * 120.00227 * 2 1 3 5 5 C 1.37981 * 120.06785 * 306.54199 * 4 2 1 6 6 C 1.38346 * 120.14207 * 179.70036 * 5 4 2 7 7 C 1.38385 * 120.29606 * 0.27644 * 6 5 4 8 8 C 1.37934 * 120.14577 * 0.02562 * 7 6 5 9 9 C 1.39562 * 120.08104 * 126.81310 * 4 2 1 10 10 C 1.47821 * 120.14666 * 359.97438 * 9 4 2 11 11 O 1.21561 * 119.99469 * 40.06780 * 10 9 4 12 12 N 1.34771 * 120.00312 * 220.06968 * 10 9 4 13 13 C 1.39849 * 120.00140 * 185.13657 * 12 10 9 14 14 C 1.38975 * 120.03820 * 212.56030 * 13 12 10 15 15 C 1.38156 * 120.06709 * 179.74676 * 14 13 12 16 16 C 1.38173 * 120.13502 * 0.55203 * 15 14 13 17 17 C 1.38910 * 120.07474 * 359.70031 * 16 15 14 18 18 O 1.35758 * 120.03208 * 179.97438 * 17 16 15 19 19 C 1.34837 * 116.99680 * 354.40810 * 18 17 16 20 20 H 1.08002 * 119.99991 * 5.11848 * 19 18 17 21 21 C 1.38647 * 119.99612 * 185.12252 * 19 18 17 22 22 N 1.31560 * 120.00228 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99821 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47329 * 89.99949 * 23 21 19 25 25 H 1.48499 * 109.47058 * 209.99454 * 23 21 19 26 26 H 1.48497 * 109.46852 * 329.99396 * 23 21 19 27 27 C 1.38729 * 120.03532 * 32.83816 * 13 12 10 28 28 H 1.09007 * 109.46700 * 60.00048 * 1 2 3 29 29 H 1.09001 * 109.47157 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47574 * 300.00274 * 1 2 3 31 31 H 1.09005 * 109.47532 * 239.99589 * 2 1 3 32 32 H 1.08999 * 109.47375 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.47186 * 299.99654 * 3 2 1 34 34 H 1.08996 * 109.47589 * 59.99775 * 3 2 1 35 35 H 1.07998 * 119.92837 * 359.97438 * 5 4 2 36 36 H 1.08000 * 119.85094 * 180.25041 * 6 5 4 37 37 H 1.07999 * 119.92815 * 179.97438 * 7 6 5 38 38 H 1.08001 * 120.07250 * 179.97438 * 8 7 6 39 39 H 0.97004 * 119.99910 * 5.12963 * 12 10 9 40 40 H 1.08008 * 119.96880 * 0.02562 * 14 13 12 41 41 H 1.07994 * 119.93144 * 180.27920 * 15 14 13 42 42 H 1.07995 * 119.96078 * 179.72506 * 16 15 14 43 43 H 0.96999 * 119.99767 * 180.02562 * 22 21 19 44 44 H 1.07998 * 120.07023 * 359.95348 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.5924 -0.3240 2.4798 6 6 2.0479 -0.9792 3.6100 7 6 2.9509 -2.0216 3.4963 8 6 3.4034 -2.4138 2.2537 9 6 2.9477 -1.7569 1.1092 10 6 3.4275 -2.1727 -0.2258 11 8 3.6769 -1.3345 -1.0701 12 7 3.5882 -3.4809 -0.5068 13 6 4.1430 -3.8703 -1.7300 14 6 3.7350 -5.0538 -2.3336 15 6 4.2789 -5.4365 -3.5446 16 6 5.2380 -4.6501 -4.1538 17 6 5.6539 -3.4687 -3.5530 18 8 6.5966 -2.6971 -4.1520 19 6 7.1722 -3.1894 -5.2675 20 1 6.8201 -4.1180 -5.6921 21 6 8.2160 -2.5036 -5.8694 22 7 8.6446 -1.3722 -5.3525 23 14 9.0130 -3.1852 -7.4153 24 1 8.3064 -2.6580 -8.6103 25 1 10.4385 -2.7716 -7.4609 26 1 8.9278 -4.6677 -7.4036 27 6 5.1055 -3.0786 -2.3394 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6767 1.9564 0.8899 35 1 0.8877 0.4887 2.5754 36 1 1.6974 -0.6755 4.5854 37 1 3.3029 -2.5287 4.3826 38 1 4.1085 -3.2272 2.1664 39 1 3.3192 -4.1524 0.1395 40 1 2.9887 -5.6728 -1.8578 41 1 3.9570 -6.3543 -4.0139 42 1 5.6645 -4.9542 -5.0982 43 1 9.3747 -0.8923 -5.7738 44 1 5.4270 -2.1603 -1.8706 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001125148364.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:06 Heat of formation + Delta-G solvation = -14.343868 kcal Electronic energy + Delta-G solvation = -26604.136575 eV Core-core repulsion = 22872.991674 eV Total energy + Delta-G solvation = -3731.144900 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.74766 -39.27019 -38.27294 -36.49534 -35.50917 -34.03147 -32.23620 -31.55288 -29.99302 -29.41026 -28.33185 -27.15513 -25.32252 -24.18777 -23.59206 -22.17314 -21.38143 -20.27525 -20.04583 -18.27842 -17.81131 -17.03425 -16.37899 -15.73841 -15.53919 -15.06374 -14.97885 -14.65543 -14.24547 -14.18606 -14.01765 -13.82874 -13.62575 -13.48362 -13.43873 -12.78599 -12.56542 -12.50000 -12.31778 -12.15568 -11.81239 -11.73511 -11.55131 -11.22956 -11.17707 -11.02207 -10.86178 -10.78838 -10.66738 -10.45109 -9.84205 -9.61196 -9.16745 -9.14787 -8.91666 -8.80427 -7.66859 -7.17260 -6.40475 -3.99815 0.78052 1.14822 2.05190 2.35366 2.90551 3.14741 3.16152 3.20880 3.22427 3.60279 3.99754 4.48702 4.55518 4.58241 4.68334 4.77741 5.00546 5.12355 5.15516 5.18502 5.23553 5.35140 5.37257 5.57975 5.62032 5.64858 5.74890 5.78422 5.83453 5.86497 5.99382 6.06230 6.10975 6.14908 6.23015 6.24288 6.30432 6.38426 6.50424 6.66734 6.72288 6.88721 7.03817 7.08442 7.35946 7.48422 7.68430 7.79402 8.04201 8.32124 9.04350 9.75571 10.77387 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.016886 B = 0.002874 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.772643 B = 9741.857733 C =10324.837904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.080 4.080 3 C -0.134 4.134 4 C -0.018 4.018 5 C -0.123 4.123 6 C -0.098 4.098 7 C -0.132 4.132 8 C -0.086 4.086 9 C -0.127 4.127 10 C 0.551 3.449 11 O -0.496 6.496 12 N -0.663 5.663 13 C 0.177 3.823 14 C -0.236 4.236 15 C -0.057 4.057 16 C -0.245 4.245 17 C 0.168 3.832 18 O -0.173 6.173 19 C -0.392 4.392 20 H 0.093 0.907 21 C 0.039 3.961 22 N -0.860 5.860 23 Si 0.941 3.059 24 H -0.273 1.273 25 H -0.278 1.278 26 H -0.267 1.267 27 C -0.188 4.188 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.105 0.895 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.049 0.951 35 H 0.127 0.873 36 H 0.125 0.875 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.406 0.594 40 H 0.108 0.892 41 H 0.112 0.888 42 H 0.128 0.872 43 H 0.270 0.730 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.690 -2.005 16.366 22.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.098 4.098 3 C -0.192 4.192 4 C -0.019 4.019 5 C -0.141 4.141 6 C -0.116 4.116 7 C -0.150 4.150 8 C -0.105 4.105 9 C -0.130 4.130 10 C 0.339 3.661 11 O -0.370 6.370 12 N -0.308 5.308 13 C 0.084 3.916 14 C -0.257 4.257 15 C -0.076 4.076 16 C -0.265 4.265 17 C 0.114 3.886 18 O -0.076 6.076 19 C -0.468 4.468 20 H 0.110 0.890 21 C -0.165 4.165 22 N -0.495 5.495 23 Si 0.766 3.234 24 H -0.199 1.199 25 H -0.203 1.203 26 H -0.192 1.192 27 C -0.209 4.209 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.122 0.878 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.145 0.855 36 H 0.143 0.857 37 H 0.145 0.855 38 H 0.147 0.853 39 H 0.241 0.759 40 H 0.126 0.874 41 H 0.130 0.870 42 H 0.146 0.854 43 H 0.080 0.920 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -14.220 -0.952 15.787 21.268 hybrid contribution 0.290 -0.791 -0.349 0.912 sum -13.930 -1.743 15.437 20.866 Atomic orbital electron populations 1.21873 0.94574 1.01727 1.01827 1.20496 0.95460 0.97112 0.96689 1.21722 1.01963 0.94197 1.01285 1.19936 0.93561 0.92908 0.95486 1.20970 1.01061 1.00559 0.91525 1.21310 0.96398 0.95347 0.98573 1.21062 0.98467 0.98189 0.97242 1.21309 0.98678 0.98661 0.91818 1.19813 1.01118 0.99134 0.92967 1.18392 0.77955 0.82471 0.87296 1.90849 1.47685 1.50766 1.47728 1.43354 1.62029 1.07408 1.17967 1.17158 0.93503 0.94947 0.86001 1.20254 1.07020 0.99424 0.99021 1.20500 0.95187 0.98008 0.93929 1.21178 1.03981 0.97878 1.03469 1.19102 0.89288 0.89349 0.90892 1.83999 1.45203 1.40274 1.38164 1.21346 1.15535 1.08563 1.01365 0.88985 1.25302 0.96052 0.95803 0.99389 1.70057 1.26080 1.14139 1.39227 0.85712 0.78463 0.79049 0.80184 1.19883 1.20279 1.19184 1.20043 1.00773 1.03425 0.96675 0.92128 0.92807 0.92739 0.87751 0.92000 0.92233 0.93153 0.85478 0.85747 0.85518 0.85319 0.75886 0.87378 0.87022 0.85438 0.92029 0.85217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 8.93 37.15 0.33 -1.10 16 2 C -0.08 -1.00 2.64 -91.78 -0.24 -1.24 16 3 C -0.13 -1.61 9.07 37.16 0.34 -1.27 16 4 C -0.02 -0.22 4.81 -104.22 -0.50 -0.72 16 5 C -0.12 -1.18 8.77 -39.64 -0.35 -1.53 16 6 C -0.10 -0.82 10.04 -39.49 -0.40 -1.21 16 7 C -0.13 -1.13 10.03 -39.64 -0.40 -1.53 16 8 C -0.09 -0.89 9.36 -39.18 -0.37 -1.26 16 9 C -0.13 -1.65 5.75 -104.97 -0.60 -2.26 16 10 C 0.55 8.97 6.61 -12.34 -0.08 8.89 16 11 O -0.50 -10.12 12.17 5.31 0.06 -10.06 16 12 N -0.66 -9.98 5.24 -10.74 -0.06 -10.03 16 13 C 0.18 3.34 6.29 -83.75 -0.53 2.82 16 14 C -0.24 -4.08 9.96 -39.34 -0.39 -4.47 16 15 C -0.06 -1.05 10.03 -39.64 -0.40 -1.45 16 16 C -0.25 -5.43 9.17 -39.36 -0.36 -5.80 16 17 C 0.17 4.27 6.64 -39.14 -0.26 4.01 16 18 O -0.17 -5.16 9.76 0.00 0.00 -5.16 16 19 C -0.39 -11.21 9.49 30.88 0.29 -10.91 16 20 H 0.09 2.41 5.20 -52.49 -0.27 2.14 16 21 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 22 N -0.86 -25.88 13.67 55.48 0.76 -25.13 16 23 Si 0.94 20.85 29.55 -169.99 -5.02 15.82 16 24 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 25 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 26 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 27 C -0.19 -4.36 8.60 -39.20 -0.34 -4.70 16 28 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.45 7.05 -51.93 -0.37 0.08 16 31 H 0.10 1.66 5.15 -51.93 -0.27 1.39 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.68 8.14 -51.92 -0.42 0.25 16 34 H 0.05 0.49 7.81 -51.93 -0.41 0.09 16 35 H 0.13 0.98 7.10 -52.49 -0.37 0.61 16 36 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 37 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 38 H 0.13 1.13 7.97 -52.49 -0.42 0.72 16 39 H 0.41 4.50 8.40 -40.82 -0.34 4.15 16 40 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 41 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 42 H 0.13 2.80 5.63 -52.49 -0.30 2.50 16 43 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.13 3.23 6.37 -52.49 -0.33 2.89 16 LS Contribution 367.18 15.07 5.53 5.53 Total: -1.00 -33.85 367.18 -8.66 -42.52 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -5.59 Total: 9.23 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: -4.35 Total: -22.73 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: 0.70 Total: -35.16 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: 0.06 Total: -15.22 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.85 -8.66 -42.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001125148364.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.171 kcal (2) G-P(sol) polarization free energy of solvation -33.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds