Wall clock time and date at job start Tue Mar 31 2020 14:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47337 * 2 1 4 4 C 1.50698 * 109.47305 * 120.00227 * 2 1 3 5 5 C 1.37981 * 120.06785 * 306.54199 * 4 2 1 6 6 C 1.38346 * 120.14207 * 179.70036 * 5 4 2 7 7 C 1.38385 * 120.29606 * 0.27644 * 6 5 4 8 8 C 1.37934 * 120.14577 * 0.02562 * 7 6 5 9 9 C 1.39562 * 120.08104 * 126.81310 * 4 2 1 10 10 C 1.47821 * 120.14666 * 359.97438 * 9 4 2 11 11 O 1.21561 * 119.99469 * 40.06780 * 10 9 4 12 12 N 1.34771 * 120.00312 * 220.06968 * 10 9 4 13 13 C 1.39849 * 120.00140 * 185.13657 * 12 10 9 14 14 C 1.38975 * 120.03820 * 212.56030 * 13 12 10 15 15 C 1.38156 * 120.06709 * 179.74676 * 14 13 12 16 16 C 1.38173 * 120.13502 * 0.55203 * 15 14 13 17 17 C 1.38910 * 120.07474 * 359.70031 * 16 15 14 18 18 O 1.35758 * 120.03208 * 179.97438 * 17 16 15 19 19 C 1.34837 * 116.99680 * 354.40810 * 18 17 16 20 20 H 1.08002 * 119.99991 * 5.11848 * 19 18 17 21 21 C 1.38647 * 119.99612 * 185.12252 * 19 18 17 22 22 N 1.31560 * 120.00228 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99821 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47329 * 89.99949 * 23 21 19 25 25 H 1.48499 * 109.47058 * 209.99454 * 23 21 19 26 26 H 1.48497 * 109.46852 * 329.99396 * 23 21 19 27 27 C 1.38729 * 120.03532 * 32.83816 * 13 12 10 28 28 H 1.09007 * 109.46700 * 60.00048 * 1 2 3 29 29 H 1.09001 * 109.47157 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47574 * 300.00274 * 1 2 3 31 31 H 1.09005 * 109.47532 * 239.99589 * 2 1 3 32 32 H 1.08999 * 109.47375 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.47186 * 299.99654 * 3 2 1 34 34 H 1.08996 * 109.47589 * 59.99775 * 3 2 1 35 35 H 1.07998 * 119.92837 * 359.97438 * 5 4 2 36 36 H 1.08000 * 119.85094 * 180.25041 * 6 5 4 37 37 H 1.07999 * 119.92815 * 179.97438 * 7 6 5 38 38 H 1.08001 * 120.07250 * 179.97438 * 8 7 6 39 39 H 0.97004 * 119.99910 * 5.12963 * 12 10 9 40 40 H 1.08008 * 119.96880 * 0.02562 * 14 13 12 41 41 H 1.07994 * 119.93144 * 180.27920 * 15 14 13 42 42 H 1.07995 * 119.96078 * 179.72506 * 16 15 14 43 43 H 0.96999 * 119.99767 * 180.02562 * 22 21 19 44 44 H 1.07998 * 120.07023 * 359.95348 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.5924 -0.3240 2.4798 6 6 2.0479 -0.9792 3.6100 7 6 2.9509 -2.0216 3.4963 8 6 3.4034 -2.4138 2.2537 9 6 2.9477 -1.7569 1.1092 10 6 3.4275 -2.1727 -0.2258 11 8 3.6769 -1.3345 -1.0701 12 7 3.5882 -3.4809 -0.5068 13 6 4.1430 -3.8703 -1.7300 14 6 3.7350 -5.0538 -2.3336 15 6 4.2789 -5.4365 -3.5446 16 6 5.2380 -4.6501 -4.1538 17 6 5.6539 -3.4687 -3.5530 18 8 6.5966 -2.6971 -4.1520 19 6 7.1722 -3.1894 -5.2675 20 1 6.8201 -4.1180 -5.6921 21 6 8.2160 -2.5036 -5.8694 22 7 8.6446 -1.3722 -5.3525 23 14 9.0130 -3.1852 -7.4153 24 1 8.3064 -2.6580 -8.6103 25 1 10.4385 -2.7716 -7.4609 26 1 8.9278 -4.6677 -7.4036 27 6 5.1055 -3.0786 -2.3394 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6767 1.9564 0.8899 35 1 0.8877 0.4887 2.5754 36 1 1.6974 -0.6755 4.5854 37 1 3.3029 -2.5287 4.3826 38 1 4.1085 -3.2272 2.1664 39 1 3.3192 -4.1524 0.1395 40 1 2.9887 -5.6728 -1.8578 41 1 3.9570 -6.3543 -4.0139 42 1 5.6645 -4.9542 -5.0982 43 1 9.3747 -0.8923 -5.7738 44 1 5.4270 -2.1603 -1.8706 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001125148364.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:05 Heat of formation + Delta-G solvation = -35.496693 kcal Electronic energy + Delta-G solvation = -26605.053830 eV Core-core repulsion = 22872.991674 eV Total energy + Delta-G solvation = -3732.062156 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.96106 -40.72654 -39.67769 -38.15518 -36.46504 -35.47432 -34.27865 -32.52496 -31.12307 -30.77076 -29.88306 -28.05213 -27.36579 -25.35989 -24.40450 -23.63697 -23.00548 -21.55782 -20.98665 -19.98449 -19.28157 -18.61927 -17.45386 -17.11336 -16.78865 -16.59881 -16.29418 -16.10034 -15.77660 -15.52714 -15.37873 -14.98545 -14.95226 -14.56083 -14.45626 -14.33663 -14.22044 -13.60712 -13.39488 -13.24426 -13.14771 -12.97401 -12.94650 -12.70714 -12.56308 -12.38323 -12.12909 -12.11246 -11.89728 -11.64260 -11.37215 -11.32447 -10.79718 -10.67255 -9.96617 -9.71500 -9.35174 -8.89437 -8.47741 -6.17755 -0.12914 0.39574 0.47836 0.67901 1.33657 1.43924 1.52775 1.68203 1.95490 2.18403 2.75588 2.83166 3.13643 3.38517 3.62665 3.72624 3.82636 4.10591 4.10773 4.24639 4.25694 4.33296 4.38332 4.42275 4.47019 4.50178 4.65839 4.70495 4.73248 4.83594 4.86076 4.90876 5.02036 5.07933 5.09637 5.17351 5.19775 5.33045 5.37630 5.39128 5.42144 5.51493 5.60921 5.64038 5.71265 5.96495 6.01501 6.16409 6.39076 6.95671 7.07292 7.77886 8.76140 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.016886 B = 0.002874 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.772643 B = 9741.857733 C =10324.837904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.082 4.082 3 C -0.131 4.131 4 C -0.034 4.034 5 C -0.125 4.125 6 C -0.086 4.086 7 C -0.127 4.127 8 C -0.088 4.088 9 C -0.154 4.154 10 C 0.548 3.452 11 O -0.548 6.548 12 N -0.649 5.649 13 C 0.185 3.815 14 C -0.206 4.206 15 C -0.046 4.046 16 C -0.255 4.255 17 C 0.129 3.871 18 O -0.236 6.236 19 C -0.415 4.415 20 H 0.107 0.893 21 C -0.027 4.027 22 N -0.925 5.925 23 Si 1.024 2.976 24 H -0.263 1.263 25 H -0.271 1.271 26 H -0.248 1.248 27 C -0.214 4.214 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.030 0.970 33 H 0.057 0.943 34 H 0.078 0.922 35 H 0.149 0.851 36 H 0.161 0.839 37 H 0.159 0.841 38 H 0.140 0.860 39 H 0.429 0.571 40 H 0.163 0.837 41 H 0.162 0.838 42 H 0.125 0.875 43 H 0.272 0.728 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.564 -4.891 18.967 26.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.101 4.101 3 C -0.188 4.188 4 C -0.035 4.035 5 C -0.142 4.142 6 C -0.104 4.104 7 C -0.145 4.145 8 C -0.107 4.107 9 C -0.157 4.157 10 C 0.338 3.662 11 O -0.426 6.426 12 N -0.296 5.296 13 C 0.091 3.909 14 C -0.226 4.226 15 C -0.064 4.064 16 C -0.274 4.274 17 C 0.078 3.922 18 O -0.142 6.142 19 C -0.490 4.490 20 H 0.125 0.875 21 C -0.224 4.224 22 N -0.563 5.563 23 Si 0.843 3.157 24 H -0.188 1.188 25 H -0.196 1.196 26 H -0.171 1.171 27 C -0.236 4.236 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.049 0.951 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.167 0.833 36 H 0.179 0.821 37 H 0.177 0.823 38 H 0.158 0.842 39 H 0.268 0.732 40 H 0.180 0.820 41 H 0.179 0.821 42 H 0.143 0.857 43 H 0.081 0.919 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -17.160 -3.901 18.458 25.502 hybrid contribution 0.903 0.021 -0.843 1.235 sum -16.257 -3.880 17.615 24.282 Atomic orbital electron populations 1.21820 0.92371 1.02045 1.03012 1.20409 0.97278 0.96726 0.95664 1.21695 0.99938 0.94614 1.02580 1.20014 0.94179 0.92993 0.96294 1.21230 1.01238 1.01124 0.90652 1.21777 0.94920 0.94075 0.99609 1.21464 0.97705 0.98022 0.97305 1.21503 0.98690 0.98772 0.91725 1.19670 1.03240 1.01196 0.91621 1.19093 0.76696 0.82107 0.88261 1.90841 1.49761 1.52181 1.49820 1.43270 1.61211 1.07935 1.17148 1.17314 0.91867 0.94709 0.87010 1.20879 1.05800 0.98062 0.97879 1.21044 0.92923 0.98633 0.93814 1.21332 1.05219 0.97260 1.03638 1.19630 0.89583 0.90952 0.92025 1.83966 1.47788 1.42786 1.39672 1.21928 1.16131 1.09356 1.01631 0.87538 1.26731 0.96368 0.95965 1.03347 1.70230 1.27614 1.16476 1.41958 0.84521 0.77174 0.79170 0.74878 1.18815 1.19622 1.17091 1.20038 1.03051 1.03437 0.97051 0.92225 0.92882 0.90224 0.92045 0.95094 0.92367 0.90335 0.83290 0.82149 0.82331 0.84194 0.73172 0.81950 0.82067 0.85721 0.91878 0.88673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 8.93 71.98 0.64 -1.95 16 2 C -0.08 -2.15 2.64 -11.54 -0.03 -2.18 16 3 C -0.13 -3.30 9.07 71.98 0.65 -2.64 16 4 C -0.03 -0.80 4.81 -19.61 -0.09 -0.90 16 5 C -0.12 -2.02 8.77 22.23 0.20 -1.82 16 6 C -0.09 -1.05 10.04 22.33 0.22 -0.82 16 7 C -0.13 -1.68 10.03 22.23 0.22 -1.45 16 8 C -0.09 -1.66 9.36 22.53 0.21 -1.44 16 9 C -0.15 -4.00 5.75 -20.09 -0.12 -4.12 16 10 C 0.55 18.73 6.61 86.78 0.57 19.30 16 11 O -0.55 -24.69 12.17 -3.91 -0.05 -24.74 16 12 N -0.65 -19.28 5.24 -306.18 -1.61 -20.89 16 13 C 0.19 6.98 6.29 38.16 0.24 7.22 16 14 C -0.21 -6.36 9.96 22.43 0.22 -6.14 16 15 C -0.05 -1.53 10.03 22.23 0.22 -1.31 16 16 C -0.25 -11.43 9.17 22.42 0.21 -11.22 16 17 C 0.13 7.02 6.64 22.56 0.15 7.17 16 18 O -0.24 -15.35 9.76 -22.90 -0.22 -15.58 16 19 C -0.41 -25.31 9.49 67.92 0.64 -24.67 16 20 H 0.11 5.85 5.20 -2.91 -0.02 5.84 16 21 C -0.03 -1.62 5.49 84.83 0.47 -1.15 16 22 N -0.92 -59.83 13.67 21.61 0.30 -59.54 16 23 Si 1.02 44.33 29.55 68.60 2.03 46.36 16 24 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 25 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 26 H -0.25 -9.76 7.11 99.48 0.71 -9.06 16 27 C -0.21 -10.69 8.60 22.51 0.19 -10.50 16 28 H 0.06 1.12 8.14 -2.38 -0.02 1.11 16 29 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.08 1.11 7.05 -2.39 -0.02 1.09 16 31 H 0.06 2.14 5.15 -2.38 -0.01 2.13 16 32 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 34 H 0.08 1.47 7.81 -2.39 -0.02 1.46 16 35 H 0.15 1.71 7.10 -2.91 -0.02 1.69 16 36 H 0.16 0.86 8.06 -2.91 -0.02 0.83 16 37 H 0.16 1.11 8.06 -2.91 -0.02 1.08 16 38 H 0.14 2.18 7.97 -2.91 -0.02 2.16 16 39 H 0.43 8.51 8.40 -92.71 -0.78 7.73 16 40 H 0.16 3.41 8.06 -2.91 -0.02 3.39 16 41 H 0.16 3.90 8.06 -2.91 -0.02 3.88 16 42 H 0.13 5.57 5.63 -2.91 -0.02 5.55 16 43 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 44 H 0.10 5.33 6.37 -2.91 -0.02 5.32 16 Total: -1.00 -86.46 367.18 5.53 -80.93 By element: Atomic # 1 Polarization: 31.82 SS G_CDS: 0.26 Total: 32.08 kcal Atomic # 6 Polarization: -43.45 SS G_CDS: 4.83 Total: -38.62 kcal Atomic # 7 Polarization: -79.12 SS G_CDS: -1.31 Total: -80.43 kcal Atomic # 8 Polarization: -40.04 SS G_CDS: -0.27 Total: -40.32 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -86.46 5.53 -80.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001125148364.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.431 kcal (2) G-P(sol) polarization free energy of solvation -86.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds