Wall clock time and date at job start Tue Mar 31 2020 13:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35893 * 117.00279 * 2 1 4 4 C 1.38810 * 120.01757 * 359.97438 * 3 2 1 5 5 C 1.38170 * 120.08336 * 180.02562 * 4 3 2 6 6 C 1.38164 * 120.12673 * 359.74381 * 5 4 3 7 7 C 1.38895 * 120.03903 * 0.51173 * 6 5 4 8 8 N 1.39917 * 120.04539 * 179.76449 * 7 6 5 9 9 C 1.34775 * 119.99674 * 335.15813 * 8 7 6 10 10 O 1.21285 * 120.00499 * 354.44958 * 9 8 7 11 11 C 1.50710 * 120.00053 * 174.45716 * 9 8 7 12 12 C 1.50696 * 109.47113 * 179.97438 * 11 9 8 13 13 C 1.37638 * 120.12571 * 264.97059 * 12 11 9 14 14 C 1.38613 * 120.24638 * 180.02562 * 13 12 11 15 15 C 1.38656 * 120.50413 * 0.04731 * 14 13 12 16 16 C 1.37603 * 120.24615 * 359.67276 * 15 14 13 17 17 C 1.40701 * 120.12891 * 85.00029 * 12 11 9 18 18 C 1.41394 * 120.24187 * 359.97408 * 17 12 11 19 19 H 1.08001 * 120.00412 * 334.94468 * 18 17 12 20 20 C 1.39946 * 120.00009 * 154.93944 * 18 17 12 21 21 N 1.30831 * 120.00134 * 334.95329 * 20 18 17 22 22 Si 1.86800 * 120.00180 * 154.94775 * 20 18 17 23 23 H 1.48501 * 109.47011 * 180.02562 * 22 20 18 24 24 H 1.48503 * 109.46896 * 300.00475 * 22 20 18 25 25 H 1.48501 * 109.47148 * 60.00273 * 22 20 18 26 26 C 1.38584 * 120.02297 * 180.02562 * 3 2 1 27 27 C 1.50701 * 120.06092 * 0.02562 * 26 3 2 28 28 H 1.09006 * 109.47342 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47287 * 299.99963 * 1 2 3 30 30 H 1.09003 * 109.47443 * 59.99749 * 1 2 3 31 31 H 1.07998 * 119.95875 * 0.04671 * 4 3 2 32 32 H 1.08004 * 119.93957 * 180.02562 * 5 4 3 33 33 H 1.07999 * 119.98598 * 180.27373 * 6 5 4 34 34 H 0.96995 * 120.00282 * 155.15359 * 8 7 6 35 35 H 1.08994 * 109.47264 * 59.99129 * 11 9 8 36 36 H 1.09005 * 109.46178 * 299.99885 * 11 9 8 37 37 H 1.07996 * 119.87481 * 0.03141 * 13 12 11 38 38 H 1.08003 * 119.75127 * 180.02562 * 14 13 12 39 39 H 1.08000 * 119.87774 * 179.97438 * 15 14 13 40 40 H 1.07997 * 120.13052 * 180.29823 * 16 15 14 41 41 H 0.97004 * 119.99565 * 354.86301 * 21 20 18 42 42 H 1.09001 * 109.47129 * 269.97376 * 27 26 3 43 43 H 1.08994 * 109.47182 * 29.98147 * 27 26 3 44 44 H 1.09001 * 109.46814 * 149.98039 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2903 2.3752 -0.0005 5 6 1.9163 3.6070 -0.0011 6 6 3.2957 3.6839 0.0043 7 6 4.0569 2.5221 -0.0005 8 7 5.4539 2.5998 -0.0001 9 6 6.0679 3.6969 -0.4858 10 8 5.4162 4.5725 -1.0147 11 6 7.5643 3.8356 -0.3721 12 6 7.9960 5.1415 -0.9879 13 6 8.4228 5.1807 -2.2958 14 6 8.8209 6.3804 -2.8646 15 6 8.7953 7.5529 -2.1249 16 6 8.3668 7.5382 -0.8173 17 6 7.9648 6.3251 -0.2279 18 6 7.5283 6.2969 1.1167 19 1 6.8590 5.5179 1.4509 20 6 7.9636 7.2782 2.0145 21 7 9.0938 7.9026 1.8037 22 14 6.9310 7.6966 3.5138 23 1 7.6068 8.7605 4.2991 24 1 5.5956 8.1772 3.0766 25 1 6.7693 6.4851 4.3573 26 6 3.4298 1.2838 -0.0005 27 6 4.2524 0.0211 -0.0017 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 0.2119 2.3183 -0.0002 32 1 1.3261 4.5115 -0.0011 33 1 3.7826 4.6479 0.0083 34 1 5.9805 1.8642 0.3498 35 1 8.0465 3.0102 -0.8957 36 1 7.8519 3.8164 0.6792 37 1 8.4475 4.2735 -2.8811 38 1 9.1540 6.4021 -3.8918 39 1 9.1081 8.4819 -2.5781 40 1 8.3430 8.4533 -0.2443 41 1 9.6659 7.6347 1.0676 42 1 4.4516 -0.2838 1.0257 43 1 3.7047 -0.7689 -0.5155 44 1 5.1961 0.2027 -0.5161 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131205581.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:08 Heat of formation + Delta-G solvation = -36.281098 kcal Electronic energy + Delta-G solvation = -26936.975671 eV Core-core repulsion = 23204.879501 eV Total energy + Delta-G solvation = -3732.096170 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.66026 -39.47996 -37.89760 -36.97869 -34.41183 -33.86754 -32.38106 -31.91037 -29.29304 -29.16383 -27.76912 -27.03758 -26.28974 -24.92227 -22.59904 -21.50659 -20.94639 -20.50181 -19.61479 -18.22229 -17.75169 -17.01758 -16.00336 -15.93385 -15.88609 -15.47573 -14.99601 -14.76971 -14.21820 -14.09558 -13.85169 -13.66286 -13.46580 -13.33261 -13.25434 -12.53660 -12.33859 -12.19471 -12.14888 -12.02658 -11.79037 -11.54332 -11.48619 -11.22509 -11.10735 -10.90829 -10.85623 -10.48222 -10.39218 -10.09942 -9.67659 -9.38951 -9.23326 -8.97242 -8.17710 -7.80679 -7.58182 -7.51958 -7.13898 -4.44176 1.33913 1.55746 2.69170 2.84297 3.04906 3.09773 3.15971 3.28860 3.37187 3.58509 3.91185 4.01778 4.58266 4.76001 4.86922 4.95964 4.96793 5.13405 5.21511 5.24146 5.44837 5.52573 5.59211 5.60786 5.64621 5.77999 5.84785 5.96608 6.15138 6.16114 6.27616 6.33275 6.35109 6.38614 6.50568 6.67054 6.70651 6.98866 7.03894 7.19173 7.37663 7.40177 7.62317 7.73991 7.81528 7.84108 7.94470 8.19176 8.33042 8.58470 8.76567 8.91145 10.06336 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014055 B = 0.003526 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.624884 B = 7938.853730 C = 9025.877115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.316 6.316 3 C 0.141 3.859 4 C -0.232 4.232 5 C -0.065 4.065 6 C -0.164 4.164 7 C 0.199 3.801 8 N -0.680 5.680 9 C 0.513 3.487 10 O -0.493 6.493 11 C -0.068 4.068 12 C -0.189 4.189 13 C -0.067 4.067 14 C -0.253 4.253 15 C -0.085 4.085 16 C -0.216 4.216 17 C 0.117 3.883 18 C -0.516 4.516 19 H 0.072 0.928 20 C 0.041 3.959 21 N -0.797 5.797 22 Si 1.059 2.941 23 H -0.274 1.274 24 H -0.274 1.274 25 H -0.276 1.276 26 C -0.161 4.161 27 C -0.101 4.101 28 H 0.096 0.904 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.124 0.876 32 H 0.126 0.874 33 H 0.152 0.848 34 H 0.408 0.592 35 H 0.079 0.921 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.105 0.895 41 H 0.300 0.700 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.317 -13.913 0.206 17.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.230 6.230 3 C 0.095 3.905 4 C -0.252 4.252 5 C -0.083 4.083 6 C -0.184 4.184 7 C 0.103 3.897 8 N -0.325 5.325 9 C 0.302 3.698 10 O -0.365 6.365 11 C -0.108 4.108 12 C -0.191 4.191 13 C -0.085 4.085 14 C -0.273 4.273 15 C -0.103 4.103 16 C -0.235 4.235 17 C 0.114 3.886 18 C -0.544 4.544 19 H 0.090 0.910 20 C -0.181 4.181 21 N -0.421 5.421 22 Si 0.883 3.117 23 H -0.198 1.198 24 H -0.200 1.200 25 H -0.202 1.202 26 C -0.164 4.164 27 C -0.157 4.157 28 H 0.115 0.885 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.142 0.858 32 H 0.144 0.856 33 H 0.169 0.831 34 H 0.244 0.756 35 H 0.098 0.902 36 H 0.119 0.881 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.123 0.877 41 H 0.113 0.887 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.620 -12.373 1.130 17.012 hybrid contribution -0.046 -1.190 -1.293 1.758 sum -11.666 -13.563 -0.164 17.891 Atomic orbital electron populations 1.23009 0.78696 1.03533 1.01362 1.86009 1.21025 1.27005 1.88957 1.18385 0.91035 0.84023 0.97030 1.21093 0.99597 0.92330 1.12163 1.20818 0.94168 0.96865 0.96493 1.21482 0.93536 0.99233 1.04138 1.17403 0.83318 0.92553 0.96441 1.43903 1.04324 1.21497 1.62776 1.21538 0.91623 0.80205 0.76413 1.90655 1.66571 1.39258 1.39993 1.20268 0.89078 0.97931 1.03488 1.18937 1.12332 0.92505 0.95336 1.20361 0.98060 0.96148 0.93933 1.20266 1.14650 0.93531 0.98813 1.20618 0.98815 0.96254 0.94625 1.21146 1.09761 0.97527 0.95108 1.17386 0.88373 0.90045 0.92813 1.20449 1.26812 1.12501 0.94668 0.90994 1.26930 0.96256 0.92032 1.02921 1.70464 1.07284 1.35847 1.28482 0.83718 0.76064 0.77503 0.74411 1.19837 1.19975 1.20180 1.18738 0.91062 0.94442 1.12196 1.20483 0.98744 0.94528 1.01995 0.88525 0.92740 0.92763 0.85848 0.85644 0.83070 0.75618 0.90223 0.88148 0.89557 0.89414 0.89347 0.87699 0.88657 0.91597 0.91031 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.68 9.54 -19.40 -0.19 -3.86 16 3 C 0.14 1.88 6.66 -39.24 -0.26 1.62 16 4 C -0.23 -2.96 9.04 -39.39 -0.36 -3.31 16 5 C -0.06 -0.92 10.03 -39.63 -0.40 -1.32 16 6 C -0.16 -2.80 8.72 -39.37 -0.34 -3.14 16 7 C 0.20 3.18 6.41 -83.72 -0.54 2.64 16 8 N -0.68 -10.42 4.98 -9.87 -0.05 -10.47 16 9 C 0.51 9.82 7.27 -10.98 -0.08 9.74 16 10 O -0.49 -11.41 13.20 5.55 0.07 -11.34 16 11 C -0.07 -1.28 5.18 -29.03 -0.15 -1.43 16 12 C -0.19 -4.42 4.43 -103.91 -0.46 -4.88 16 13 C -0.07 -1.50 9.66 -39.66 -0.38 -1.89 16 14 C -0.25 -5.77 10.05 -39.29 -0.39 -6.17 16 15 C -0.08 -2.01 10.02 -39.66 -0.40 -2.41 16 16 C -0.22 -5.62 7.93 -38.87 -0.31 -5.92 16 17 C 0.12 3.03 5.31 -106.83 -0.57 2.47 16 18 C -0.52 -13.32 8.10 -37.74 -0.31 -13.63 16 19 H 0.07 1.82 6.71 -52.49 -0.35 1.46 16 20 C 0.04 1.02 4.95 -17.34 -0.09 0.93 16 21 N -0.80 -20.91 12.33 55.55 0.68 -20.23 16 22 Si 1.06 21.77 30.00 -169.99 -5.10 16.67 16 23 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 24 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 25 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 26 C -0.16 -2.24 5.91 -104.29 -0.62 -2.86 16 27 C -0.10 -1.11 9.23 36.01 0.33 -0.78 16 28 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 30 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 31 H 0.12 1.23 6.29 -52.49 -0.33 0.90 16 32 H 0.13 1.53 8.06 -52.48 -0.42 1.10 16 33 H 0.15 3.01 5.78 -52.49 -0.30 2.71 16 34 H 0.41 4.81 7.40 -40.82 -0.30 4.51 16 35 H 0.08 1.23 8.05 -51.93 -0.42 0.81 16 36 H 0.10 1.86 7.05 -51.93 -0.37 1.50 16 37 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 38 H 0.09 1.78 8.06 -52.48 -0.42 1.35 16 39 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 40 H 0.11 2.81 6.46 -52.49 -0.34 2.47 16 41 H 0.30 8.04 6.60 -40.82 -0.27 7.77 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.76 7.53 -51.93 -0.39 0.37 16 44 H 0.06 0.62 6.98 -51.93 -0.36 0.26 16 LS Contribution 362.75 15.07 5.47 5.47 Total: -1.00 -30.99 362.75 -8.99 -39.99 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -5.56 Total: 12.91 kcal Atomic # 6 Polarization: -24.81 SS G_CDS: -4.32 Total: -29.13 kcal Atomic # 7 Polarization: -31.33 SS G_CDS: 0.64 Total: -30.70 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.11 Total: -15.20 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.10 Total: 16.67 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.99 -8.99 -39.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131205581.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.704 kcal (2) G-P(sol) polarization free energy of solvation -30.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds