Wall clock time and date at job start Tue Mar 31 2020 13:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35893 * 117.00279 * 2 1 4 4 C 1.38810 * 120.01757 * 359.97438 * 3 2 1 5 5 C 1.38170 * 120.08336 * 180.02562 * 4 3 2 6 6 C 1.38164 * 120.12673 * 359.74381 * 5 4 3 7 7 C 1.38895 * 120.03903 * 0.51173 * 6 5 4 8 8 N 1.39917 * 120.04539 * 179.76449 * 7 6 5 9 9 C 1.34775 * 119.99674 * 335.15813 * 8 7 6 10 10 O 1.21285 * 120.00499 * 354.44958 * 9 8 7 11 11 C 1.50710 * 120.00053 * 174.45716 * 9 8 7 12 12 C 1.50696 * 109.47113 * 179.97438 * 11 9 8 13 13 C 1.37638 * 120.12571 * 264.97059 * 12 11 9 14 14 C 1.38613 * 120.24638 * 180.02562 * 13 12 11 15 15 C 1.38656 * 120.50413 * 0.04731 * 14 13 12 16 16 C 1.37603 * 120.24615 * 359.67276 * 15 14 13 17 17 C 1.40701 * 120.12891 * 85.00029 * 12 11 9 18 18 C 1.41394 * 120.24187 * 359.97408 * 17 12 11 19 19 H 1.08001 * 120.00412 * 334.94468 * 18 17 12 20 20 C 1.39946 * 120.00009 * 154.93944 * 18 17 12 21 21 N 1.30831 * 120.00134 * 334.95329 * 20 18 17 22 22 Si 1.86800 * 120.00180 * 154.94775 * 20 18 17 23 23 H 1.48501 * 109.47011 * 180.02562 * 22 20 18 24 24 H 1.48503 * 109.46896 * 300.00475 * 22 20 18 25 25 H 1.48501 * 109.47148 * 60.00273 * 22 20 18 26 26 C 1.38584 * 120.02297 * 180.02562 * 3 2 1 27 27 C 1.50701 * 120.06092 * 0.02562 * 26 3 2 28 28 H 1.09006 * 109.47342 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47287 * 299.99963 * 1 2 3 30 30 H 1.09003 * 109.47443 * 59.99749 * 1 2 3 31 31 H 1.07998 * 119.95875 * 0.04671 * 4 3 2 32 32 H 1.08004 * 119.93957 * 180.02562 * 5 4 3 33 33 H 1.07999 * 119.98598 * 180.27373 * 6 5 4 34 34 H 0.96995 * 120.00282 * 155.15359 * 8 7 6 35 35 H 1.08994 * 109.47264 * 59.99129 * 11 9 8 36 36 H 1.09005 * 109.46178 * 299.99885 * 11 9 8 37 37 H 1.07996 * 119.87481 * 0.03141 * 13 12 11 38 38 H 1.08003 * 119.75127 * 180.02562 * 14 13 12 39 39 H 1.08000 * 119.87774 * 179.97438 * 15 14 13 40 40 H 1.07997 * 120.13052 * 180.29823 * 16 15 14 41 41 H 0.97004 * 119.99565 * 354.86301 * 21 20 18 42 42 H 1.09001 * 109.47129 * 269.97376 * 27 26 3 43 43 H 1.08994 * 109.47182 * 29.98147 * 27 26 3 44 44 H 1.09001 * 109.46814 * 149.98039 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2903 2.3752 -0.0005 5 6 1.9163 3.6070 -0.0011 6 6 3.2957 3.6839 0.0043 7 6 4.0569 2.5221 -0.0005 8 7 5.4539 2.5998 -0.0001 9 6 6.0679 3.6969 -0.4858 10 8 5.4162 4.5725 -1.0147 11 6 7.5643 3.8356 -0.3721 12 6 7.9960 5.1415 -0.9879 13 6 8.4228 5.1807 -2.2958 14 6 8.8209 6.3804 -2.8646 15 6 8.7953 7.5529 -2.1249 16 6 8.3668 7.5382 -0.8173 17 6 7.9648 6.3251 -0.2279 18 6 7.5283 6.2969 1.1167 19 1 6.8590 5.5179 1.4509 20 6 7.9636 7.2782 2.0145 21 7 9.0938 7.9026 1.8037 22 14 6.9310 7.6966 3.5138 23 1 7.6068 8.7605 4.2991 24 1 5.5956 8.1772 3.0766 25 1 6.7693 6.4851 4.3573 26 6 3.4298 1.2838 -0.0005 27 6 4.2524 0.0211 -0.0017 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 0.2119 2.3183 -0.0002 32 1 1.3261 4.5115 -0.0011 33 1 3.7826 4.6479 0.0083 34 1 5.9805 1.8642 0.3498 35 1 8.0465 3.0102 -0.8957 36 1 7.8519 3.8164 0.6792 37 1 8.4475 4.2735 -2.8811 38 1 9.1540 6.4021 -3.8918 39 1 9.1081 8.4819 -2.5781 40 1 8.3430 8.4533 -0.2443 41 1 9.6659 7.6347 1.0676 42 1 4.4516 -0.2838 1.0257 43 1 3.7047 -0.7689 -0.5155 44 1 5.1961 0.2027 -0.5161 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131205581.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:07 Heat of formation + Delta-G solvation = -53.084685 kcal Electronic energy + Delta-G solvation = -26937.704329 eV Core-core repulsion = 23204.879501 eV Total energy + Delta-G solvation = -3732.824828 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.86064 -40.69980 -39.53367 -38.22781 -35.75466 -35.67276 -33.65491 -33.36241 -31.11219 -30.45738 -28.55263 -28.42874 -27.41604 -26.76240 -23.85128 -22.83242 -22.63095 -21.92807 -21.15926 -19.67165 -19.21822 -18.33526 -17.16302 -17.04611 -16.90444 -16.67907 -16.62875 -16.25838 -15.93413 -15.59035 -15.37283 -15.03804 -14.63051 -14.39685 -14.31950 -14.19833 -13.87148 -13.57170 -13.48534 -13.13547 -13.00955 -12.92966 -12.81336 -12.62166 -12.55176 -12.25715 -12.20966 -11.99773 -11.83264 -11.50155 -11.31031 -11.22151 -10.85343 -10.72844 -9.46124 -9.43283 -9.22580 -9.06689 -8.96943 -6.40659 0.21716 0.43882 0.88855 0.98695 1.46423 1.61301 1.68316 1.75158 1.95713 2.29972 2.53332 2.71722 2.78272 3.54588 3.79808 3.93718 3.97631 4.12184 4.19862 4.28448 4.35719 4.43816 4.47075 4.49964 4.51616 4.58182 4.59009 4.69870 4.76718 4.78343 4.81719 4.95627 5.07340 5.24697 5.25732 5.30163 5.31916 5.38475 5.49250 5.55303 5.79098 5.83960 5.88310 5.97739 6.05199 6.28513 6.41032 6.44491 6.49542 6.85076 7.01422 7.20175 8.08342 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014055 B = 0.003526 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.624884 B = 7938.853730 C = 9025.877115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.323 6.323 3 C 0.139 3.861 4 C -0.223 4.223 5 C -0.071 4.071 6 C -0.195 4.195 7 C 0.178 3.822 8 N -0.662 5.662 9 C 0.516 3.484 10 O -0.542 6.542 11 C -0.067 4.067 12 C -0.192 4.192 13 C -0.078 4.078 14 C -0.251 4.251 15 C -0.096 4.096 16 C -0.246 4.246 17 C 0.087 3.913 18 C -0.539 4.539 19 H 0.069 0.931 20 C 0.006 3.994 21 N -0.819 5.819 22 Si 1.104 2.896 23 H -0.269 1.269 24 H -0.275 1.275 25 H -0.254 1.254 26 C -0.162 4.162 27 C -0.099 4.099 28 H 0.122 0.878 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.155 0.845 32 H 0.140 0.860 33 H 0.114 0.886 34 H 0.425 0.575 35 H 0.121 0.879 36 H 0.101 0.899 37 H 0.121 0.879 38 H 0.118 0.882 39 H 0.109 0.891 40 H 0.083 0.917 41 H 0.285 0.715 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.844 -16.945 -0.007 21.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.237 6.237 3 C 0.093 3.907 4 C -0.243 4.243 5 C -0.089 4.089 6 C -0.215 4.215 7 C 0.082 3.918 8 N -0.308 5.308 9 C 0.306 3.694 10 O -0.417 6.417 11 C -0.106 4.106 12 C -0.193 4.193 13 C -0.096 4.096 14 C -0.270 4.270 15 C -0.114 4.114 16 C -0.265 4.265 17 C 0.085 3.915 18 C -0.568 4.568 19 H 0.087 0.913 20 C -0.211 4.211 21 N -0.443 5.443 22 Si 0.923 3.077 23 H -0.193 1.193 24 H -0.201 1.201 25 H -0.178 1.178 26 C -0.166 4.166 27 C -0.156 4.156 28 H 0.140 0.860 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.173 0.827 32 H 0.158 0.842 33 H 0.132 0.868 34 H 0.264 0.736 35 H 0.139 0.861 36 H 0.119 0.881 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.127 0.873 40 H 0.101 0.899 41 H 0.097 0.903 42 H 0.099 0.901 43 H 0.095 0.905 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.146 -15.468 0.926 20.321 hybrid contribution 0.314 -0.391 -1.381 1.469 sum -12.832 -15.859 -0.455 20.405 Atomic orbital electron populations 1.23362 0.76444 1.05623 1.02240 1.86013 1.23298 1.25866 1.88487 1.18553 0.91142 0.84956 0.96073 1.21399 1.01189 0.91351 1.10319 1.21000 0.93212 0.98438 0.96279 1.21341 0.95032 0.98265 1.06884 1.17492 0.83179 0.93099 0.97987 1.43561 1.04565 1.20894 1.61790 1.21439 0.91505 0.80427 0.76039 1.90653 1.67410 1.41134 1.42546 1.20294 0.89378 0.97155 1.03762 1.19429 1.10631 0.93538 0.95742 1.20816 0.97311 0.97547 0.93939 1.20716 1.13115 0.93140 1.00072 1.20904 0.98570 0.97920 0.93999 1.21154 1.12047 0.97080 0.96242 1.17763 0.89070 0.91135 0.93568 1.20546 1.27630 1.13428 0.95186 0.91335 1.28165 0.96321 0.91515 1.05085 1.70562 1.08134 1.36964 1.28645 0.83160 0.74428 0.78264 0.71882 1.19349 1.20050 1.17797 1.19011 0.91957 0.94575 1.11042 1.20549 0.98705 0.93144 1.03171 0.86016 0.91716 0.91941 0.82735 0.84235 0.86786 0.73573 0.86107 0.88066 0.86157 0.86372 0.87329 0.89860 0.90261 0.90085 0.90464 0.91173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.32 -6.46 9.54 -92.34 -0.88 -7.34 16 3 C 0.14 3.38 6.66 22.49 0.15 3.53 16 4 C -0.22 -5.20 9.04 22.39 0.20 -4.99 16 5 C -0.07 -1.99 10.03 22.24 0.22 -1.77 16 6 C -0.19 -6.86 8.72 22.41 0.20 -6.67 16 7 C 0.18 5.62 6.41 38.14 0.24 5.87 16 8 N -0.66 -19.85 4.98 -303.54 -1.51 -21.36 16 9 C 0.52 19.82 7.27 87.66 0.64 20.46 16 10 O -0.54 -25.97 13.20 -3.04 -0.04 -26.01 16 11 C -0.07 -2.46 5.18 29.10 0.15 -2.31 16 12 C -0.19 -8.98 4.43 -19.41 -0.09 -9.06 16 13 C -0.08 -3.41 9.66 22.22 0.21 -3.19 16 14 C -0.25 -11.14 10.05 22.46 0.23 -10.92 16 15 C -0.10 -4.60 10.02 22.22 0.22 -4.38 16 16 C -0.25 -13.35 7.93 22.73 0.18 -13.17 16 17 C 0.09 4.70 5.31 -21.29 -0.11 4.59 16 18 C -0.54 -29.01 8.10 23.46 0.19 -28.82 16 19 H 0.07 3.61 6.71 -2.91 -0.02 3.59 16 20 C 0.01 0.29 4.95 85.26 0.42 0.71 16 21 N -0.82 -44.95 12.33 21.83 0.27 -44.68 16 22 Si 1.10 44.99 30.00 68.60 2.06 47.05 16 23 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 24 H -0.28 -11.13 7.11 99.48 0.71 -10.42 16 25 H -0.25 -9.34 7.11 99.48 0.71 -8.63 16 26 C -0.16 -4.24 5.91 -19.65 -0.12 -4.36 16 27 C -0.10 -1.91 9.23 71.24 0.66 -1.25 16 28 H 0.12 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.06 0.63 7.66 -2.39 -0.02 0.61 16 30 H 0.06 0.63 7.66 -2.39 -0.02 0.61 16 31 H 0.16 2.54 6.29 -2.91 -0.02 2.52 16 32 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 33 H 0.11 4.89 5.78 -2.91 -0.02 4.88 16 34 H 0.43 9.28 7.40 -92.71 -0.69 8.59 16 35 H 0.12 3.40 8.05 -2.39 -0.02 3.38 16 36 H 0.10 3.73 7.05 -2.38 -0.02 3.72 16 37 H 0.12 4.37 8.06 -2.91 -0.02 4.35 16 38 H 0.12 4.46 8.06 -2.91 -0.02 4.43 16 39 H 0.11 4.62 8.06 -2.91 -0.02 4.60 16 40 H 0.08 4.76 6.46 -2.91 -0.02 4.75 16 41 H 0.28 16.20 6.60 -92.71 -0.61 15.58 16 42 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.08 1.42 7.53 -2.39 -0.02 1.40 16 44 H 0.07 1.21 6.98 -2.39 -0.02 1.20 16 Total: -1.00 -71.24 362.75 5.12 -66.13 By element: Atomic # 1 Polarization: 40.12 SS G_CDS: 0.51 Total: 40.63 kcal Atomic # 6 Polarization: -59.13 SS G_CDS: 4.71 Total: -54.41 kcal Atomic # 7 Polarization: -64.80 SS G_CDS: -1.24 Total: -66.04 kcal Atomic # 8 Polarization: -32.43 SS G_CDS: -0.92 Total: -33.35 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.06 Total: 47.05 kcal Total: -71.24 5.12 -66.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131205581.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.043 kcal (2) G-P(sol) polarization free energy of solvation -71.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds