Wall clock time and date at job start Tue Mar 31 2020 15:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47098 * 2 1 4 4 C 1.53007 * 109.46861 * 179.97438 * 3 2 1 5 5 N 1.46899 * 109.46889 * 179.97438 * 4 3 2 6 6 C 1.46901 * 110.99975 * 66.04923 * 5 4 3 7 7 C 1.50706 * 109.46916 * 193.95161 * 6 5 4 8 8 H 1.07996 * 120.00010 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00009 * 179.97438 * 7 6 5 10 10 N 1.31507 * 120.00149 * 180.02562 * 9 7 6 11 11 Si 1.86806 * 119.99719 * 0.02562 * 9 7 6 12 12 H 1.48502 * 109.47028 * 90.00084 * 11 9 7 13 13 H 1.48501 * 109.47034 * 209.99852 * 11 9 7 14 14 H 1.48498 * 109.47168 * 330.00217 * 11 9 7 15 15 C 1.46900 * 110.99910 * 189.99939 * 5 4 3 16 16 C 1.50707 * 109.47182 * 169.99969 * 15 5 4 17 17 C 1.38227 * 119.99734 * 90.00049 * 16 15 5 18 18 C 1.38240 * 120.00040 * 179.97438 * 17 16 15 19 19 C 1.38231 * 119.99623 * 0.02666 * 18 17 16 20 20 S 1.76200 * 120.00074 * 179.97438 * 19 18 17 21 21 C 1.81404 * 104.45035 * 89.99637 * 20 19 18 22 22 O 1.42107 * 104.27494 * 333.92746 * 20 19 18 23 23 O 1.42102 * 104.28011 * 206.06865 * 20 19 18 24 24 C 1.38235 * 120.00303 * 0.24893 * 19 18 17 25 25 C 1.38237 * 119.99649 * 270.02433 * 16 15 5 26 26 H 1.09001 * 109.47335 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46983 * 300.00525 * 1 2 3 28 28 H 1.09005 * 109.46728 * 59.99679 * 1 2 3 29 29 H 1.08994 * 109.47070 * 239.99529 * 2 1 3 30 30 H 1.09005 * 109.46728 * 120.00321 * 2 1 3 31 31 H 1.09004 * 109.47399 * 60.00372 * 3 2 1 32 32 H 1.08995 * 109.47532 * 299.99608 * 3 2 1 33 33 H 1.08994 * 109.46713 * 60.00179 * 4 3 2 34 34 H 1.08994 * 109.47400 * 300.00017 * 4 3 2 35 35 H 1.08997 * 109.47283 * 313.94923 * 6 5 4 36 36 H 1.09000 * 109.47219 * 73.95318 * 6 5 4 37 37 H 0.97004 * 120.00434 * 180.02562 * 10 9 7 38 38 H 1.09008 * 109.47058 * 50.00067 * 15 5 4 39 39 H 1.08991 * 109.47326 * 290.00344 * 15 5 4 40 40 H 1.08001 * 120.00648 * 0.02562 * 17 16 15 41 41 H 1.07995 * 120.00407 * 180.02562 * 18 17 16 42 42 H 1.09002 * 109.47124 * 60.00198 * 21 20 19 43 43 H 1.09001 * 109.46975 * 300.00319 * 21 20 19 44 44 H 1.09004 * 109.47147 * 180.02562 * 21 20 19 45 45 H 1.08001 * 120.00394 * 179.73476 * 24 19 18 46 46 H 1.07998 * 120.00306 * 359.97438 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0597 2.8274 0.0000 6 6 3.7098 3.5100 1.2528 7 6 3.9135 4.9944 1.0899 8 1 4.2678 5.3908 0.1499 9 6 3.6474 5.8462 2.1409 10 7 3.8246 7.1415 1.9986 11 14 3.0351 5.1603 3.7670 12 1 4.1948 4.8462 4.6398 13 1 2.1712 6.1667 4.4349 14 1 2.2527 3.9227 3.5191 15 6 5.5087 2.8733 -0.2375 16 6 5.9337 4.2995 -0.4756 17 6 6.3167 5.0934 0.5892 18 6 6.7071 6.4014 0.3709 19 6 6.7140 6.9156 -0.9122 20 16 7.2109 8.5829 -1.1905 21 6 9.0012 8.4819 -1.4652 22 8 6.9312 9.2415 0.0372 23 8 6.5427 8.9525 -2.3890 24 6 6.3255 6.1234 -1.9764 25 6 5.9401 4.8138 -1.7587 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6768 1.9563 -0.8900 33 1 3.9337 0.9285 -0.8891 34 1 3.9330 0.9287 0.8908 35 1 2.6660 3.3111 1.4958 36 1 4.3466 3.1421 2.0573 37 1 3.6378 7.7408 2.7381 38 1 5.7527 2.2706 -1.1124 39 1 6.0323 2.4786 0.6331 40 1 6.3117 4.6916 1.5917 41 1 7.0067 7.0216 1.2027 42 1 9.2010 7.8481 -2.3292 43 1 9.4805 8.0561 -0.5837 44 1 9.3978 9.4807 -1.6473 45 1 6.3268 6.5264 -2.9784 46 1 5.6409 4.1935 -2.5906 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137729698.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:44 Heat of formation + Delta-G solvation = -32.612648 kcal Electronic energy + Delta-G solvation = -26400.458718 eV Core-core repulsion = 22803.965575 eV Total energy + Delta-G solvation = -3596.493143 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.07012 -37.02845 -36.57469 -35.40382 -34.48889 -32.57570 -31.29537 -30.14392 -29.32947 -28.72898 -27.76165 -24.77424 -22.73524 -21.99898 -21.68079 -20.56563 -19.79756 -18.45658 -17.19721 -16.97741 -15.78612 -15.58673 -15.36139 -15.01634 -14.82634 -14.56876 -14.09839 -13.81255 -13.58710 -13.36148 -13.12484 -13.00922 -12.91187 -12.75933 -12.65874 -12.39192 -12.09259 -11.83174 -11.56455 -11.47314 -11.43806 -11.32850 -11.15394 -10.90298 -10.74599 -10.72322 -10.57314 -10.45887 -10.27063 -10.00050 -9.92118 -9.76118 -9.43350 -8.67671 -8.14890 -7.67093 -7.51179 -6.03583 -3.95639 0.52288 1.69231 2.31118 3.22604 3.32726 3.33993 3.40718 4.12025 4.37965 4.48455 4.51146 4.82136 4.92121 5.11076 5.19075 5.21567 5.25263 5.31336 5.42800 5.53691 5.62530 5.71265 5.73880 5.78268 5.86667 5.88824 5.96443 6.01823 6.03068 6.11448 6.22073 6.26289 6.39434 6.50334 6.64864 6.65875 6.75998 6.80057 6.86234 6.93925 7.12890 7.40156 7.57423 7.77411 7.81970 7.93514 8.60784 9.05693 9.51461 11.03598 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014559 B = 0.004119 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.681580 B = 6796.286386 C = 8005.673861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.117 4.117 4 C 0.057 3.943 5 N -0.524 5.524 6 C 0.155 3.845 7 C -0.511 4.511 8 H 0.104 0.896 9 C 0.073 3.927 10 N -0.868 5.868 11 Si 0.861 3.139 12 H -0.279 1.279 13 H -0.286 1.286 14 H -0.269 1.269 15 C 0.100 3.900 16 C -0.016 4.016 17 C -0.038 4.038 18 C -0.028 4.028 19 C -0.644 4.644 20 S 2.499 3.501 21 C -0.658 4.658 22 O -0.931 6.931 23 O -0.949 6.949 24 C -0.056 4.056 25 C -0.132 4.132 26 H 0.049 0.951 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.021 0.979 35 H 0.033 0.967 36 H -0.018 1.018 37 H 0.266 0.734 38 H 0.068 0.932 39 H 0.033 0.967 40 H 0.119 0.881 41 H 0.126 0.874 42 H 0.126 0.874 43 H 0.128 0.872 44 H 0.122 0.878 45 H 0.124 0.876 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.726 -7.636 -5.673 12.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.155 4.155 4 C -0.072 4.072 5 N -0.248 5.248 6 C 0.029 3.971 7 C -0.547 4.547 8 H 0.122 0.878 9 C -0.132 4.132 10 N -0.504 5.504 11 Si 0.689 3.311 12 H -0.205 1.205 13 H -0.212 1.212 14 H -0.194 1.194 15 C -0.027 4.027 16 C -0.016 4.016 17 C -0.057 4.057 18 C -0.048 4.048 19 C -0.733 4.733 20 S 2.680 3.320 21 C -0.806 4.806 22 O -0.928 6.928 23 O -0.946 6.946 24 C -0.075 4.075 25 C -0.151 4.151 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.039 0.961 35 H 0.051 0.949 36 H 0.000 1.000 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.051 0.949 40 H 0.137 0.863 41 H 0.144 0.856 42 H 0.145 0.855 43 H 0.147 0.853 44 H 0.141 0.859 45 H 0.142 0.858 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 6.952 -6.458 -5.951 11.201 hybrid contribution 0.116 -1.430 1.847 2.339 sum 7.069 -7.888 -4.104 11.359 Atomic orbital electron populations 1.21759 0.96093 1.00980 1.02007 1.21494 0.95711 0.97403 1.01379 1.21636 0.95003 0.95599 1.03280 1.22057 0.95518 0.90271 0.99312 1.62045 1.11262 1.13043 1.38440 1.20358 0.95931 0.95738 0.85109 1.21587 1.43024 0.88556 1.01559 0.87817 1.24900 0.95537 0.94762 0.98000 1.69895 1.46463 1.01979 1.32018 0.87082 0.79518 0.79263 0.85267 1.20504 1.21167 1.19426 1.20938 0.89167 0.93174 0.99467 1.19681 0.93280 0.95411 0.93270 1.20699 0.93534 0.93689 0.97822 1.20427 0.95651 0.94853 0.93835 1.29866 1.19806 1.22935 1.00732 1.05016 0.76963 0.75404 0.74656 1.30325 1.27506 1.10891 1.11914 1.93603 1.82361 1.72876 1.44003 1.93532 1.70667 1.82118 1.48327 1.20476 0.96579 0.93507 0.96964 1.20750 1.02469 0.95500 0.96414 0.93232 0.92786 0.92687 0.92352 0.92556 0.91542 0.91154 0.91911 0.96065 0.94924 1.00049 0.92369 0.91391 0.94893 0.86341 0.85636 0.85480 0.85328 0.85941 0.85850 0.86696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.91 37.16 0.37 -1.31 16 2 C -0.12 -1.47 5.93 -26.73 -0.16 -1.63 16 3 C -0.12 -1.79 5.17 -26.73 -0.14 -1.92 16 4 C 0.06 0.90 4.96 -3.82 -0.02 0.88 16 5 N -0.52 -10.14 4.56 -237.51 -1.08 -11.23 16 6 C 0.15 3.49 3.59 -4.97 -0.02 3.47 16 7 C -0.51 -13.23 5.93 -34.44 -0.20 -13.44 16 8 H 0.10 2.92 4.96 -52.49 -0.26 2.66 16 9 C 0.07 1.96 5.45 -17.82 -0.10 1.87 16 10 N -0.87 -25.18 13.96 55.43 0.77 -24.40 16 11 Si 0.86 20.63 27.47 -169.99 -4.67 15.96 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 14 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 15 C 0.10 1.74 5.11 -4.97 -0.03 1.71 16 16 C -0.02 -0.30 3.46 -104.62 -0.36 -0.66 16 17 C -0.04 -0.77 5.90 -39.58 -0.23 -1.00 16 18 C -0.03 -0.56 9.35 -39.58 -0.37 -0.93 16 19 C -0.64 -11.93 5.66 -39.58 -0.22 -12.16 16 20 S 2.50 40.15 5.80 -107.50 -0.62 39.52 16 21 C -0.66 -6.47 10.80 101.05 1.09 -5.38 16 22 O -0.93 -18.87 17.13 -57.54 -0.99 -19.85 16 23 O -0.95 -17.78 17.12 -57.54 -0.98 -18.77 16 24 C -0.06 -1.00 9.47 -39.58 -0.37 -1.37 16 25 C -0.13 -2.37 9.50 -39.58 -0.38 -2.75 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 1.15 6.31 -51.93 -0.33 0.82 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.06 0.87 7.93 -51.93 -0.41 0.46 16 34 H 0.02 0.33 8.12 -51.93 -0.42 -0.09 16 35 H 0.03 0.77 5.04 -51.93 -0.26 0.51 16 36 H -0.02 -0.41 7.41 -51.93 -0.38 -0.79 16 37 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 38 H 0.07 1.00 7.88 -51.92 -0.41 0.59 16 39 H 0.03 0.55 7.96 -51.93 -0.41 0.14 16 40 H 0.12 2.47 7.68 -52.49 -0.40 2.07 16 41 H 0.13 2.53 7.57 -52.49 -0.40 2.13 16 42 H 0.13 1.02 8.14 -51.92 -0.42 0.59 16 43 H 0.13 1.09 8.14 -51.92 -0.42 0.67 16 44 H 0.12 0.97 8.14 -51.92 -0.42 0.54 16 45 H 0.12 1.93 7.57 -52.49 -0.40 1.53 16 46 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 375.04 15.07 5.65 5.65 Total: -1.00 -33.95 375.04 -10.54 -44.50 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -7.48 Total: 3.25 kcal Atomic # 6 Polarization: -33.48 SS G_CDS: -1.14 Total: -34.62 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: -0.31 Total: -35.63 kcal Atomic # 8 Polarization: -36.65 SS G_CDS: -1.97 Total: -38.62 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.67 Total: 15.96 kcal Atomic # 16 Polarization: 40.15 SS G_CDS: -0.62 Total: 39.52 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.95 -10.54 -44.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137729698.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.883 kcal (2) G-P(sol) polarization free energy of solvation -33.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds