Wall clock time and date at job start Tue Mar 31 2020 15:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47098 * 2 1 4 4 C 1.53007 * 109.46861 * 179.97438 * 3 2 1 5 5 N 1.46899 * 109.46889 * 179.97438 * 4 3 2 6 6 C 1.46901 * 110.99975 * 66.04923 * 5 4 3 7 7 C 1.50706 * 109.46916 * 193.95161 * 6 5 4 8 8 H 1.07996 * 120.00010 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00009 * 179.97438 * 7 6 5 10 10 N 1.31507 * 120.00149 * 180.02562 * 9 7 6 11 11 Si 1.86806 * 119.99719 * 0.02562 * 9 7 6 12 12 H 1.48502 * 109.47028 * 90.00084 * 11 9 7 13 13 H 1.48501 * 109.47034 * 209.99852 * 11 9 7 14 14 H 1.48498 * 109.47168 * 330.00217 * 11 9 7 15 15 C 1.46900 * 110.99910 * 189.99939 * 5 4 3 16 16 C 1.50707 * 109.47182 * 169.99969 * 15 5 4 17 17 C 1.38227 * 119.99734 * 90.00049 * 16 15 5 18 18 C 1.38240 * 120.00040 * 179.97438 * 17 16 15 19 19 C 1.38231 * 119.99623 * 0.02666 * 18 17 16 20 20 S 1.76200 * 120.00074 * 179.97438 * 19 18 17 21 21 C 1.81404 * 104.45035 * 89.99637 * 20 19 18 22 22 O 1.42107 * 104.27494 * 333.92746 * 20 19 18 23 23 O 1.42102 * 104.28011 * 206.06865 * 20 19 18 24 24 C 1.38235 * 120.00303 * 0.24893 * 19 18 17 25 25 C 1.38237 * 119.99649 * 270.02433 * 16 15 5 26 26 H 1.09001 * 109.47335 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46983 * 300.00525 * 1 2 3 28 28 H 1.09005 * 109.46728 * 59.99679 * 1 2 3 29 29 H 1.08994 * 109.47070 * 239.99529 * 2 1 3 30 30 H 1.09005 * 109.46728 * 120.00321 * 2 1 3 31 31 H 1.09004 * 109.47399 * 60.00372 * 3 2 1 32 32 H 1.08995 * 109.47532 * 299.99608 * 3 2 1 33 33 H 1.08994 * 109.46713 * 60.00179 * 4 3 2 34 34 H 1.08994 * 109.47400 * 300.00017 * 4 3 2 35 35 H 1.08997 * 109.47283 * 313.94923 * 6 5 4 36 36 H 1.09000 * 109.47219 * 73.95318 * 6 5 4 37 37 H 0.97004 * 120.00434 * 180.02562 * 10 9 7 38 38 H 1.09008 * 109.47058 * 50.00067 * 15 5 4 39 39 H 1.08991 * 109.47326 * 290.00344 * 15 5 4 40 40 H 1.08001 * 120.00648 * 0.02562 * 17 16 15 41 41 H 1.07995 * 120.00407 * 180.02562 * 18 17 16 42 42 H 1.09002 * 109.47124 * 60.00198 * 21 20 19 43 43 H 1.09001 * 109.46975 * 300.00319 * 21 20 19 44 44 H 1.09004 * 109.47147 * 180.02562 * 21 20 19 45 45 H 1.08001 * 120.00394 * 179.73476 * 24 19 18 46 46 H 1.07998 * 120.00306 * 359.97438 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0597 2.8274 0.0000 6 6 3.7098 3.5100 1.2528 7 6 3.9135 4.9944 1.0899 8 1 4.2678 5.3908 0.1499 9 6 3.6474 5.8462 2.1409 10 7 3.8246 7.1415 1.9986 11 14 3.0351 5.1603 3.7670 12 1 4.1948 4.8462 4.6398 13 1 2.1712 6.1667 4.4349 14 1 2.2527 3.9227 3.5191 15 6 5.5087 2.8733 -0.2375 16 6 5.9337 4.2995 -0.4756 17 6 6.3167 5.0934 0.5892 18 6 6.7071 6.4014 0.3709 19 6 6.7140 6.9156 -0.9122 20 16 7.2109 8.5829 -1.1905 21 6 9.0012 8.4819 -1.4652 22 8 6.9312 9.2415 0.0372 23 8 6.5427 8.9525 -2.3890 24 6 6.3255 6.1234 -1.9764 25 6 5.9401 4.8138 -1.7587 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6768 1.9563 -0.8900 33 1 3.9337 0.9285 -0.8891 34 1 3.9330 0.9287 0.8908 35 1 2.6660 3.3111 1.4958 36 1 4.3466 3.1421 2.0573 37 1 3.6378 7.7408 2.7381 38 1 5.7527 2.2706 -1.1124 39 1 6.0323 2.4786 0.6331 40 1 6.3117 4.6916 1.5917 41 1 7.0067 7.0216 1.2027 42 1 9.2010 7.8481 -2.3292 43 1 9.4805 8.0561 -0.5837 44 1 9.3978 9.4807 -1.6473 45 1 6.3268 6.5264 -2.9784 46 1 5.6409 4.1935 -2.5906 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137729698.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:43 Heat of formation + Delta-G solvation = -56.931612 kcal Electronic energy + Delta-G solvation = -26401.513267 eV Core-core repulsion = 22803.965575 eV Total energy + Delta-G solvation = -3597.547692 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.56152 -38.43518 -37.97337 -36.80525 -35.69164 -34.52207 -32.66655 -31.67276 -30.32852 -30.23520 -29.18686 -26.16661 -24.35374 -23.49324 -22.97397 -21.79120 -21.30189 -19.80620 -18.98062 -18.53413 -17.04746 -16.98566 -16.73229 -16.42256 -16.29179 -16.09183 -15.62148 -15.23892 -14.97411 -14.69276 -14.53955 -14.29971 -14.10077 -13.92905 -13.87251 -13.79354 -13.42034 -13.30322 -13.06863 -12.98682 -12.89748 -12.85231 -12.55053 -12.32624 -12.09864 -11.94683 -11.83254 -11.80941 -11.70119 -11.60215 -11.37635 -11.27390 -11.17876 -10.70746 -9.63742 -9.31104 -9.02407 -8.10529 -6.05309 -0.67736 0.21540 0.80178 1.29216 1.34533 1.40494 2.11487 2.37328 2.71670 3.18820 3.24970 3.36955 3.43847 3.96179 4.05925 4.09749 4.14457 4.16664 4.27874 4.30495 4.32630 4.48503 4.52548 4.60547 4.65737 4.74148 4.81748 4.84568 4.93793 4.97151 4.99080 5.03985 5.07833 5.14690 5.19583 5.28696 5.35896 5.43143 5.45186 5.50922 5.59721 5.68161 5.88663 6.10478 6.28940 6.40548 6.70757 6.96652 7.45536 8.98381 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014559 B = 0.004119 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.681580 B = 6796.286386 C = 8005.673861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C -0.115 4.115 4 C 0.057 3.943 5 N -0.539 5.539 6 C 0.165 3.835 7 C -0.498 4.498 8 H 0.078 0.922 9 C 0.023 3.977 10 N -0.916 5.916 11 Si 0.913 3.087 12 H -0.273 1.273 13 H -0.293 1.293 14 H -0.258 1.258 15 C 0.100 3.900 16 C -0.024 4.024 17 C -0.056 4.056 18 C -0.044 4.044 19 C -0.657 4.657 20 S 2.495 3.505 21 C -0.615 4.615 22 O -0.987 6.987 23 O -0.984 6.984 24 C -0.058 4.058 25 C -0.136 4.136 26 H 0.068 0.932 27 H 0.042 0.958 28 H 0.053 0.947 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.038 0.962 32 H 0.059 0.941 33 H 0.091 0.909 34 H 0.027 0.973 35 H 0.025 0.975 36 H -0.020 1.020 37 H 0.259 0.741 38 H 0.103 0.897 39 H 0.037 0.963 40 H 0.102 0.898 41 H 0.112 0.888 42 H 0.159 0.841 43 H 0.150 0.850 44 H 0.155 0.845 45 H 0.147 0.853 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.230 -10.079 -7.471 15.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C -0.153 4.153 4 C -0.070 4.070 5 N -0.263 5.263 6 C 0.038 3.962 7 C -0.536 4.536 8 H 0.096 0.904 9 C -0.176 4.176 10 N -0.556 5.556 11 Si 0.740 3.260 12 H -0.198 1.198 13 H -0.220 1.220 14 H -0.182 1.182 15 C -0.027 4.027 16 C -0.024 4.024 17 C -0.076 4.076 18 C -0.063 4.063 19 C -0.744 4.744 20 S 2.680 3.320 21 C -0.769 4.769 22 O -0.985 6.985 23 O -0.981 6.981 24 C -0.077 4.077 25 C -0.155 4.155 26 H 0.087 0.913 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.110 0.890 34 H 0.045 0.955 35 H 0.043 0.957 36 H -0.002 1.002 37 H 0.068 0.932 38 H 0.121 0.879 39 H 0.055 0.945 40 H 0.120 0.880 41 H 0.130 0.870 42 H 0.177 0.823 43 H 0.168 0.832 44 H 0.173 0.827 45 H 0.165 0.835 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 8.392 -8.965 -7.743 14.517 hybrid contribution -0.183 -0.662 2.231 2.334 sum 8.209 -9.627 -5.512 13.801 Atomic orbital electron populations 1.21768 0.95584 1.02094 1.01470 1.21448 0.96144 0.95158 1.02523 1.21608 0.94823 0.97487 1.01359 1.22176 0.95665 0.88295 1.00892 1.61947 1.12706 1.15270 1.36333 1.20087 0.95338 0.93954 0.86834 1.21700 1.41399 0.90346 1.00159 0.90423 1.25499 0.96281 0.94829 1.01020 1.70056 1.49545 1.03308 1.32653 0.86234 0.79124 0.78707 0.81976 1.19834 1.21980 1.18217 1.21051 0.87967 0.92532 1.01170 1.19933 0.92895 0.96338 0.93272 1.20694 0.94944 0.94218 0.97730 1.20439 0.96495 0.94914 0.94486 1.30238 1.19751 1.24291 1.00118 1.04985 0.80273 0.73756 0.72966 1.29970 1.18506 1.14056 1.14389 1.93539 1.85222 1.73542 1.46172 1.93480 1.74077 1.82047 1.48495 1.20893 0.95302 0.93600 0.97890 1.21128 1.01601 0.95957 0.96799 0.91278 0.93837 0.92800 0.90524 0.91990 0.94283 0.92251 0.89027 0.95506 0.95732 1.00231 0.93151 0.87879 0.94481 0.88037 0.87048 0.82255 0.83181 0.82663 0.83486 0.83989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 9.91 71.98 0.71 -2.36 16 2 C -0.11 -2.47 5.93 30.59 0.18 -2.28 16 3 C -0.11 -3.32 5.17 30.60 0.16 -3.16 16 4 C 0.06 1.66 4.96 86.31 0.43 2.09 16 5 N -0.54 -20.11 4.56 -905.35 -4.13 -24.24 16 6 C 0.16 7.45 3.59 85.56 0.31 7.76 16 7 C -0.50 -26.58 5.93 25.60 0.15 -26.43 16 8 H 0.08 4.52 4.96 -2.91 -0.01 4.50 16 9 C 0.02 1.30 5.45 84.66 0.46 1.76 16 10 N -0.92 -56.13 13.96 21.45 0.30 -55.83 16 11 Si 0.91 43.84 27.47 68.60 1.88 45.73 16 12 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 13 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 14 H -0.26 -11.76 6.54 99.48 0.65 -11.11 16 15 C 0.10 3.28 5.11 85.56 0.44 3.72 16 16 C -0.02 -0.89 3.46 -19.86 -0.07 -0.96 16 17 C -0.06 -2.37 5.90 22.27 0.13 -2.24 16 18 C -0.04 -1.85 9.35 22.27 0.21 -1.65 16 19 C -0.66 -24.60 5.66 22.27 0.13 -24.48 16 20 S 2.49 79.90 5.80 -56.49 -0.33 79.57 16 21 C -0.61 -9.63 10.80 113.37 1.22 -8.41 16 22 O -0.99 -41.89 17.13 -127.65 -2.19 -44.08 16 23 O -0.98 -36.80 17.12 -127.65 -2.19 -38.99 16 24 C -0.06 -2.01 9.47 22.27 0.21 -1.80 16 25 C -0.14 -4.69 9.50 22.27 0.21 -4.47 16 26 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 28 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 29 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 31 H 0.04 1.33 6.31 -2.39 -0.02 1.31 16 32 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.09 2.17 7.93 -2.39 -0.02 2.15 16 34 H 0.03 0.76 8.12 -2.39 -0.02 0.74 16 35 H 0.02 1.16 5.04 -2.39 -0.01 1.15 16 36 H -0.02 -0.90 7.41 -2.39 -0.02 -0.92 16 37 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 38 H 0.10 2.65 7.88 -2.38 -0.02 2.63 16 39 H 0.04 1.19 7.96 -2.39 -0.02 1.17 16 40 H 0.10 4.49 7.68 -2.91 -0.02 4.47 16 41 H 0.11 4.87 7.57 -2.91 -0.02 4.85 16 42 H 0.16 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.15 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.16 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.15 4.33 7.57 -2.91 -0.02 4.30 16 46 H 0.14 4.06 8.06 -2.91 -0.02 4.03 16 Total: -1.00 -78.80 375.04 -0.87 -79.67 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: 0.89 Total: 21.08 kcal Atomic # 6 Polarization: -67.80 SS G_CDS: 4.88 Total: -62.92 kcal Atomic # 7 Polarization: -76.24 SS G_CDS: -3.83 Total: -80.07 kcal Atomic # 8 Polarization: -78.69 SS G_CDS: -4.37 Total: -83.06 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.88 Total: 45.73 kcal Atomic # 16 Polarization: 79.90 SS G_CDS: -0.33 Total: 79.57 kcal Total: -78.80 -0.87 -79.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137729698.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.741 kcal (2) G-P(sol) polarization free energy of solvation -78.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds