Wall clock time and date at job start Tue Mar 31 2020 14:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47153 * 2 1 4 4 C 1.50700 * 109.47448 * 180.02562 * 3 2 1 5 5 C 1.33386 * 125.20409 * 90.00047 * 4 3 2 6 6 C 1.38428 * 114.91812 * 179.79419 * 5 4 3 7 7 C 1.33390 * 114.92334 * 0.43134 * 6 5 4 8 8 C 1.50697 * 125.20526 * 179.86153 * 7 6 5 9 9 N 1.46900 * 109.47188 * 95.27189 * 8 7 6 10 10 C 1.46904 * 110.99850 * 287.52198 * 9 8 7 11 11 C 1.50700 * 109.46967 * 297.84720 * 10 9 8 12 12 H 1.07996 * 120.00039 * 5.05538 * 11 10 9 13 13 C 1.37878 * 120.00190 * 185.04903 * 11 10 9 14 14 N 1.31519 * 119.99664 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00472 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47031 * 90.00159 * 15 13 11 17 17 H 1.48498 * 109.47426 * 209.99948 * 15 13 11 18 18 H 1.48503 * 109.46820 * 330.00333 * 15 13 11 19 19 C 1.46896 * 111.00011 * 163.57019 * 9 8 7 20 20 C 1.50700 * 109.47296 * 190.00110 * 19 9 8 21 21 O 1.20833 * 119.99780 * 359.97438 * 20 19 9 22 22 O 1.34227 * 120.00358 * 179.97438 * 20 19 9 23 23 C 1.45198 * 117.00304 * 179.97438 * 22 20 19 24 24 C 1.52995 * 109.47570 * 179.97438 * 23 22 20 25 25 S 1.75888 * 109.59175 * 359.59170 * 7 6 5 26 26 H 1.08998 * 109.47186 * 299.99668 * 1 2 3 27 27 H 1.08994 * 109.47463 * 60.00019 * 1 2 3 28 28 H 1.09003 * 109.46770 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47076 * 239.99978 * 2 1 3 30 30 H 1.08996 * 109.47459 * 120.00530 * 2 1 3 31 31 H 1.09006 * 109.47148 * 60.00022 * 3 2 1 32 32 H 1.09004 * 109.47467 * 300.00251 * 3 2 1 33 33 H 1.07995 * 122.54280 * 0.02562 * 5 4 3 34 34 H 1.08006 * 122.54016 * 180.27358 * 6 5 4 35 35 H 1.09001 * 109.46748 * 335.27094 * 8 7 6 36 36 H 1.08993 * 109.47090 * 215.27034 * 8 7 6 37 37 H 1.08993 * 109.47217 * 57.84894 * 10 9 8 38 38 H 1.09002 * 109.46978 * 177.85607 * 10 9 8 39 39 H 0.97000 * 120.00091 * 179.97438 * 14 13 11 40 40 H 1.09002 * 109.46827 * 309.99446 * 19 9 8 41 41 H 1.09003 * 109.47526 * 69.99642 * 19 9 8 42 42 H 1.09002 * 109.47231 * 300.00199 * 23 22 20 43 43 H 1.09001 * 109.47148 * 59.99474 * 23 22 20 44 44 H 1.09002 * 109.47033 * 300.00353 * 24 23 22 45 45 H 1.09007 * 109.47038 * 59.99955 * 24 23 22 46 46 H 1.08993 * 109.47361 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.3155 1.4427 -1.0909 6 6 5.6776 1.4473 -0.8443 7 6 6.0152 1.4417 0.4462 8 6 7.4264 1.4419 0.9750 9 7 7.8375 2.8204 1.2727 10 6 8.0724 3.5784 0.0364 11 6 9.1978 2.9413 -0.7372 12 1 9.6349 2.0162 -0.3915 13 6 9.6695 3.5394 -1.8865 14 7 9.1375 4.6662 -2.3073 15 14 11.0641 2.7494 -2.8459 16 1 10.5035 1.8181 -3.8577 17 1 11.8550 3.8045 -3.5289 18 1 11.9423 1.9976 -1.9139 19 6 9.0257 2.8405 2.1362 20 6 9.2720 4.2466 2.6192 21 8 8.5337 5.1404 2.2785 22 8 10.3115 4.5062 3.4278 23 6 10.4880 5.8832 3.8532 24 6 11.7140 5.9828 4.7630 25 16 4.5614 1.4417 1.4362 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 3.9061 1.4433 -2.0902 34 1 6.4114 1.4523 -1.6367 35 1 8.0950 1.0170 0.2263 36 1 7.4734 0.8442 1.8852 37 1 7.1666 3.5741 -0.5699 38 1 8.3385 4.6057 0.2851 39 1 9.4696 5.0872 -3.1156 40 1 8.8637 2.1855 2.9923 41 1 9.8911 2.4934 1.5717 42 1 10.6315 6.5180 2.9788 43 1 9.6034 6.2111 4.3990 44 1 11.5702 5.3480 5.6373 45 1 12.5989 5.6547 4.2175 46 1 11.8468 7.0165 5.0819 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138527551.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:21 Heat of formation + Delta-G solvation = -63.762623 kcal Electronic energy + Delta-G solvation = -25347.094316 eV Core-core repulsion = 21749.250409 eV Total energy + Delta-G solvation = -3597.843907 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.87718 -38.00388 -36.86141 -35.65954 -34.63848 -32.51788 -31.58489 -30.54535 -28.17279 -27.65588 -25.47721 -23.95946 -23.04591 -22.52522 -21.32913 -21.09608 -19.78986 -18.43126 -17.19787 -16.62059 -16.36369 -16.16922 -15.44707 -14.93941 -14.83239 -14.72368 -14.61559 -14.11324 -13.73070 -13.50189 -13.16416 -13.06772 -12.69197 -12.51120 -12.35766 -12.23944 -12.05153 -11.75485 -11.48809 -11.40767 -11.32393 -11.18440 -11.14291 -11.02721 -10.91519 -10.70804 -10.59787 -10.45512 -10.23760 -10.10710 -10.04112 -9.76884 -9.41222 -8.41120 -7.99737 -7.90721 -7.30748 -6.03698 -4.13927 1.47930 2.11543 2.53335 2.94858 3.08038 3.24312 3.32186 3.33091 3.33896 4.37164 4.82834 4.93550 4.99832 5.02971 5.09004 5.13496 5.26363 5.30971 5.42449 5.46707 5.49500 5.55727 5.66475 5.69870 5.74464 5.77492 5.87998 5.90382 5.90870 6.01907 6.05468 6.11224 6.18979 6.21284 6.30175 6.40389 6.71380 6.89541 6.95029 7.08228 7.17827 7.56157 7.87711 7.95279 8.16995 8.24666 8.52621 8.96866 9.52046 11.01333 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010449 B = 0.003718 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2678.999439 B = 7529.734087 C = 9576.392842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.043 4.043 4 C -0.194 4.194 5 C -0.128 4.128 6 C -0.128 4.128 7 C -0.136 4.136 8 C 0.126 3.874 9 N -0.525 5.525 10 C 0.177 3.823 11 C -0.558 4.558 12 H 0.056 0.944 13 C 0.070 3.930 14 N -0.882 5.882 15 Si 0.884 3.116 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.071 3.929 20 C 0.466 3.534 21 O -0.483 6.483 22 O -0.369 6.369 23 C 0.062 3.938 24 C -0.150 4.150 25 S 0.084 5.916 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.130 0.870 34 H 0.143 0.857 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.036 0.964 38 H 0.056 0.944 39 H 0.262 0.738 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.065 0.935 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.135 -6.413 9.375 13.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.083 4.083 4 C -0.311 4.311 5 C -0.159 4.159 6 C -0.158 4.158 7 C -0.253 4.253 8 C -0.004 4.004 9 N -0.250 5.250 10 C 0.052 3.948 11 C -0.597 4.597 12 H 0.074 0.926 13 C -0.134 4.134 14 N -0.520 5.520 15 Si 0.712 3.288 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.058 4.058 20 C 0.307 3.693 21 O -0.367 6.367 22 O -0.287 6.287 23 C -0.012 4.012 24 C -0.207 4.207 25 S 0.348 5.652 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.148 0.852 34 H 0.161 0.839 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.054 0.946 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.111 0.889 41 H 0.105 0.895 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.084 0.916 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.994 -5.713 10.963 14.722 hybrid contribution 1.803 -0.389 -2.771 3.328 sum -6.192 -6.102 8.192 11.945 Atomic orbital electron populations 1.21786 0.95842 1.01538 1.01792 1.21549 0.95348 0.96295 1.02534 1.20094 0.88243 0.97190 1.02753 1.24304 0.98857 1.11867 0.96076 1.20020 0.93142 1.04053 0.98716 1.20198 0.95916 1.03099 0.96613 1.24248 0.97667 1.07667 0.95746 1.20426 0.89680 0.90883 0.99394 1.62310 1.30799 1.11678 1.20209 1.20027 0.96098 0.94761 0.83888 1.21707 1.19362 1.08770 1.09877 0.92592 1.24917 0.96508 0.94669 0.97287 1.69969 1.41573 1.17270 1.23207 0.86721 0.82554 0.79149 0.80372 1.20566 1.21173 1.19915 1.21384 0.96658 0.89721 0.98045 1.23671 0.77566 0.92646 0.75371 1.90642 1.45811 1.47493 1.52752 1.86462 1.48946 1.31424 1.61900 1.22872 0.98779 0.80912 0.98608 1.21778 0.97215 1.02255 0.99438 1.83922 0.97317 1.73977 1.09996 0.92763 0.92712 0.92782 0.91709 0.91872 0.91227 0.90510 0.85185 0.83905 0.90955 0.91733 0.94609 0.92640 0.92802 0.88895 0.89511 0.91381 0.91711 0.91786 0.91592 0.90697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.91 37.16 0.37 -0.88 16 2 C -0.12 -1.20 5.92 -26.73 -0.16 -1.35 16 3 C -0.04 -0.51 5.71 -27.88 -0.16 -0.67 16 4 C -0.19 -2.89 5.76 -36.00 -0.21 -3.10 16 5 C -0.13 -2.08 10.05 -41.21 -0.41 -2.50 16 6 C -0.13 -2.38 9.07 -41.21 -0.37 -2.75 16 7 C -0.14 -2.49 5.49 -36.00 -0.20 -2.69 16 8 C 0.13 2.33 5.32 -4.98 -0.03 2.30 16 9 N -0.52 -11.18 4.39 -238.97 -1.05 -12.23 16 10 C 0.18 4.58 4.63 -4.97 -0.02 4.56 16 11 C -0.56 -14.74 7.32 -34.44 -0.25 -14.99 16 12 H 0.06 1.42 5.96 -52.49 -0.31 1.10 16 13 C 0.07 1.92 5.46 -17.82 -0.10 1.83 16 14 N -0.88 -25.97 13.29 55.43 0.74 -25.23 16 15 Si 0.88 20.94 29.54 -169.99 -5.02 15.92 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 18 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 19 C 0.07 1.35 5.36 -4.98 -0.03 1.32 16 20 C 0.47 9.47 7.67 36.01 0.28 9.75 16 21 O -0.48 -11.45 14.07 -18.76 -0.26 -11.72 16 22 O -0.37 -6.47 10.22 -39.25 -0.40 -6.87 16 23 C 0.06 0.91 6.19 37.15 0.23 1.14 16 24 C -0.15 -1.59 10.29 37.15 0.38 -1.21 16 25 S 0.08 1.34 23.31 -107.50 -2.51 -1.17 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.13 1.86 8.06 -52.49 -0.42 1.44 16 34 H 0.14 2.84 8.06 -52.48 -0.42 2.42 16 35 H 0.07 1.42 6.22 -51.93 -0.32 1.10 16 36 H 0.06 1.02 7.80 -51.93 -0.41 0.61 16 37 H 0.04 1.01 6.70 -51.93 -0.35 0.66 16 38 H 0.06 1.64 5.86 -51.93 -0.30 1.34 16 39 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.09 1.41 7.86 -51.93 -0.41 1.01 16 41 H 0.09 1.70 6.52 -51.93 -0.34 1.36 16 42 H 0.07 1.06 8.13 -51.93 -0.42 0.64 16 43 H 0.06 0.91 8.13 -51.93 -0.42 0.49 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 389.30 15.07 5.87 5.87 Total: -1.00 -31.29 389.30 -10.81 -42.10 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -7.49 Total: 2.57 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: -0.68 Total: -9.23 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: -0.31 Total: -37.46 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -0.67 Total: -18.59 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: 1.34 SS G_CDS: -2.51 Total: -1.17 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.29 -10.81 -42.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138527551.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.667 kcal (2) G-P(sol) polarization free energy of solvation -31.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds