Wall clock time and date at job start Tue Mar 31 2020 14:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47153 * 2 1 4 4 C 1.50700 * 109.47448 * 180.02562 * 3 2 1 5 5 C 1.33386 * 125.20409 * 90.00047 * 4 3 2 6 6 C 1.38428 * 114.91812 * 179.79419 * 5 4 3 7 7 C 1.33390 * 114.92334 * 0.43134 * 6 5 4 8 8 C 1.50697 * 125.20526 * 179.86153 * 7 6 5 9 9 N 1.46900 * 109.47188 * 95.27189 * 8 7 6 10 10 C 1.46904 * 110.99850 * 287.52198 * 9 8 7 11 11 C 1.50700 * 109.46967 * 297.84720 * 10 9 8 12 12 H 1.07996 * 120.00039 * 5.05538 * 11 10 9 13 13 C 1.37878 * 120.00190 * 185.04903 * 11 10 9 14 14 N 1.31519 * 119.99664 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00472 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47031 * 90.00159 * 15 13 11 17 17 H 1.48498 * 109.47426 * 209.99948 * 15 13 11 18 18 H 1.48503 * 109.46820 * 330.00333 * 15 13 11 19 19 C 1.46896 * 111.00011 * 163.57019 * 9 8 7 20 20 C 1.50700 * 109.47296 * 190.00110 * 19 9 8 21 21 O 1.20833 * 119.99780 * 359.97438 * 20 19 9 22 22 O 1.34227 * 120.00358 * 179.97438 * 20 19 9 23 23 C 1.45198 * 117.00304 * 179.97438 * 22 20 19 24 24 C 1.52995 * 109.47570 * 179.97438 * 23 22 20 25 25 S 1.75888 * 109.59175 * 359.59170 * 7 6 5 26 26 H 1.08998 * 109.47186 * 299.99668 * 1 2 3 27 27 H 1.08994 * 109.47463 * 60.00019 * 1 2 3 28 28 H 1.09003 * 109.46770 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47076 * 239.99978 * 2 1 3 30 30 H 1.08996 * 109.47459 * 120.00530 * 2 1 3 31 31 H 1.09006 * 109.47148 * 60.00022 * 3 2 1 32 32 H 1.09004 * 109.47467 * 300.00251 * 3 2 1 33 33 H 1.07995 * 122.54280 * 0.02562 * 5 4 3 34 34 H 1.08006 * 122.54016 * 180.27358 * 6 5 4 35 35 H 1.09001 * 109.46748 * 335.27094 * 8 7 6 36 36 H 1.08993 * 109.47090 * 215.27034 * 8 7 6 37 37 H 1.08993 * 109.47217 * 57.84894 * 10 9 8 38 38 H 1.09002 * 109.46978 * 177.85607 * 10 9 8 39 39 H 0.97000 * 120.00091 * 179.97438 * 14 13 11 40 40 H 1.09002 * 109.46827 * 309.99446 * 19 9 8 41 41 H 1.09003 * 109.47526 * 69.99642 * 19 9 8 42 42 H 1.09002 * 109.47231 * 300.00199 * 23 22 20 43 43 H 1.09001 * 109.47148 * 59.99474 * 23 22 20 44 44 H 1.09002 * 109.47033 * 300.00353 * 24 23 22 45 45 H 1.09007 * 109.47038 * 59.99955 * 24 23 22 46 46 H 1.08993 * 109.47361 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.3155 1.4427 -1.0909 6 6 5.6776 1.4473 -0.8443 7 6 6.0152 1.4417 0.4462 8 6 7.4264 1.4419 0.9750 9 7 7.8375 2.8204 1.2727 10 6 8.0724 3.5784 0.0364 11 6 9.1978 2.9413 -0.7372 12 1 9.6349 2.0162 -0.3915 13 6 9.6695 3.5394 -1.8865 14 7 9.1375 4.6662 -2.3073 15 14 11.0641 2.7494 -2.8459 16 1 10.5035 1.8181 -3.8577 17 1 11.8550 3.8045 -3.5289 18 1 11.9423 1.9976 -1.9139 19 6 9.0257 2.8405 2.1362 20 6 9.2720 4.2466 2.6192 21 8 8.5337 5.1404 2.2785 22 8 10.3115 4.5062 3.4278 23 6 10.4880 5.8832 3.8532 24 6 11.7140 5.9828 4.7630 25 16 4.5614 1.4417 1.4362 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 3.9061 1.4433 -2.0902 34 1 6.4114 1.4523 -1.6367 35 1 8.0950 1.0170 0.2263 36 1 7.4734 0.8442 1.8852 37 1 7.1666 3.5741 -0.5699 38 1 8.3385 4.6057 0.2851 39 1 9.4696 5.0872 -3.1156 40 1 8.8637 2.1855 2.9923 41 1 9.8911 2.4934 1.5717 42 1 10.6315 6.5180 2.9788 43 1 9.6034 6.2111 4.3990 44 1 11.5702 5.3480 5.6373 45 1 12.5989 5.6547 4.2175 46 1 11.8468 7.0165 5.0819 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001138527551.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:20 Heat of formation + Delta-G solvation = -80.804400 kcal Electronic energy + Delta-G solvation = -25347.833303 eV Core-core repulsion = 21749.250409 eV Total energy + Delta-G solvation = -3598.582894 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.44271 -39.41948 -38.31149 -37.19692 -35.70372 -34.57453 -32.71830 -31.76685 -29.71799 -29.22820 -27.00039 -25.53449 -24.33114 -23.75806 -22.62820 -22.23834 -21.44418 -19.83553 -18.79376 -18.41831 -17.77586 -17.61834 -17.01647 -16.56828 -16.23689 -16.10108 -15.80022 -15.67871 -15.03159 -14.71938 -14.51272 -14.26032 -14.12877 -13.67730 -13.60738 -13.52467 -13.34051 -13.08983 -12.97911 -12.84891 -12.65314 -12.52082 -12.48558 -12.42509 -12.30412 -12.09673 -12.01130 -11.94110 -11.71133 -11.63180 -11.46496 -11.40601 -11.16822 -10.55356 -9.34291 -9.22117 -9.04780 -8.13424 -6.32974 0.15200 0.82792 1.19524 1.35419 1.36962 1.37109 1.46979 1.68544 1.96485 2.36860 3.12828 3.40433 3.84661 3.90742 4.00979 4.07889 4.13795 4.14491 4.23320 4.27177 4.35674 4.38039 4.52056 4.60693 4.67407 4.80142 4.84635 4.86738 4.87789 4.94190 4.94434 5.02303 5.15394 5.23766 5.25706 5.27647 5.38826 5.41129 5.48449 5.53266 5.54510 5.72328 5.82826 5.96220 6.17200 6.36552 6.88070 6.95503 7.37973 8.90074 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010449 B = 0.003718 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2678.999439 B = 7529.734087 C = 9576.392842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C -0.045 4.045 4 C -0.179 4.179 5 C -0.149 4.149 6 C -0.141 4.141 7 C -0.165 4.165 8 C 0.128 3.872 9 N -0.531 5.531 10 C 0.202 3.798 11 C -0.554 4.554 12 H 0.068 0.932 13 C 0.013 3.987 14 N -0.927 5.927 15 Si 0.953 3.047 16 H -0.274 1.274 17 H -0.288 1.288 18 H -0.260 1.260 19 C 0.069 3.931 20 C 0.465 3.535 21 O -0.526 6.526 22 O -0.364 6.364 23 C 0.052 3.948 24 C -0.140 4.140 25 S 0.110 5.890 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.145 0.855 34 H 0.117 0.883 35 H 0.057 0.943 36 H 0.100 0.900 37 H 0.002 0.998 38 H 0.014 0.986 39 H 0.262 0.738 40 H 0.140 0.860 41 H 0.083 0.917 42 H 0.050 0.950 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.065 0.935 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.260 -8.097 10.931 15.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C -0.084 4.084 4 C -0.297 4.297 5 C -0.179 4.179 6 C -0.172 4.172 7 C -0.282 4.282 8 C 0.000 4.000 9 N -0.256 5.256 10 C 0.075 3.925 11 C -0.593 4.593 12 H 0.086 0.914 13 C -0.186 4.186 14 N -0.566 5.566 15 Si 0.778 3.222 16 H -0.199 1.199 17 H -0.214 1.214 18 H -0.184 1.184 19 C -0.059 4.059 20 C 0.308 3.692 21 O -0.414 6.414 22 O -0.281 6.281 23 C -0.022 4.022 24 C -0.197 4.197 25 S 0.374 5.626 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.163 0.837 34 H 0.135 0.865 35 H 0.075 0.925 36 H 0.118 0.882 37 H 0.021 0.979 38 H 0.032 0.968 39 H 0.071 0.929 40 H 0.157 0.843 41 H 0.101 0.899 42 H 0.068 0.932 43 H 0.087 0.913 44 H 0.095 0.905 45 H 0.084 0.916 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.098 -7.429 12.553 16.684 hybrid contribution 1.777 0.165 -3.167 3.636 sum -6.321 -7.264 9.386 13.447 Atomic orbital electron populations 1.21760 0.94180 1.02368 1.02320 1.21509 0.96730 0.94798 1.02282 1.20261 0.85697 0.98714 1.03723 1.24771 1.00512 1.09227 0.95166 1.20117 0.92278 1.05473 1.00062 1.20199 0.96717 1.03895 0.96342 1.24336 0.98736 1.08845 0.96322 1.20468 0.89589 0.89385 1.00584 1.62143 1.32060 1.13110 1.18271 1.19463 0.94304 0.93390 0.85327 1.21987 1.18964 1.08766 1.09616 0.91375 1.25801 0.99182 0.95105 0.98541 1.70128 1.43513 1.19122 1.23877 0.85626 0.79375 0.78139 0.79021 1.19920 1.21405 1.18387 1.21563 0.95461 0.89873 0.99042 1.24021 0.77427 0.92802 0.74942 1.90630 1.47538 1.48780 1.54449 1.86460 1.47528 1.33181 1.60941 1.23227 1.01056 0.79161 0.98710 1.21794 0.94829 1.04280 0.98762 1.83718 0.95836 1.73375 1.09623 0.92223 0.92230 0.91845 0.92037 0.92121 0.90307 0.89461 0.83741 0.86517 0.92464 0.88215 0.97941 0.96837 0.92945 0.84261 0.89905 0.93162 0.91325 0.90465 0.91601 0.88106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.91 71.98 0.71 -1.35 16 2 C -0.11 -2.06 5.92 30.59 0.18 -1.88 16 3 C -0.04 -0.95 5.71 29.85 0.17 -0.78 16 4 C -0.18 -5.17 5.76 24.59 0.14 -5.03 16 5 C -0.15 -4.87 10.05 21.22 0.21 -4.66 16 6 C -0.14 -5.42 9.07 21.22 0.19 -5.22 16 7 C -0.16 -6.10 5.49 24.59 0.13 -5.96 16 8 C 0.13 4.73 5.32 85.56 0.45 5.18 16 9 N -0.53 -22.87 4.39 -909.96 -4.00 -26.87 16 10 C 0.20 10.89 4.63 85.56 0.40 11.28 16 11 C -0.55 -29.97 7.32 25.60 0.19 -29.78 16 12 H 0.07 3.45 5.96 -2.91 -0.02 3.43 16 13 C 0.01 0.74 5.46 84.65 0.46 1.20 16 14 N -0.93 -56.72 13.29 21.45 0.28 -56.43 16 15 Si 0.95 43.54 29.54 68.60 2.03 45.56 16 16 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 17 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 18 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 19 C 0.07 2.56 5.36 85.56 0.46 3.02 16 20 C 0.46 19.03 7.67 71.24 0.55 19.58 16 21 O -0.53 -25.92 14.07 21.94 0.31 -25.61 16 22 O -0.36 -12.54 10.22 -51.39 -0.53 -13.07 16 23 C 0.05 1.50 6.19 71.98 0.45 1.95 16 24 C -0.14 -2.68 10.29 71.98 0.74 -1.94 16 25 S 0.11 3.39 23.31 -56.49 -1.32 2.08 16 26 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 30 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 32 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.14 4.16 8.06 -2.91 -0.02 4.13 16 34 H 0.12 5.00 8.06 -2.91 -0.02 4.98 16 35 H 0.06 2.27 6.22 -2.39 -0.01 2.25 16 36 H 0.10 2.92 7.80 -2.39 -0.02 2.90 16 37 H 0.00 0.15 6.70 -2.39 -0.02 0.13 16 38 H 0.01 0.85 5.86 -2.39 -0.01 0.83 16 39 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 40 H 0.14 3.83 7.86 -2.39 -0.02 3.82 16 41 H 0.08 3.18 6.52 -2.39 -0.02 3.16 16 42 H 0.05 1.61 8.13 -2.39 -0.02 1.60 16 43 H 0.07 1.91 8.13 -2.39 -0.02 1.89 16 44 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 46 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -71.05 389.30 3.18 -67.88 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: 0.96 Total: 20.84 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: 5.44 Total: -14.38 kcal Atomic # 7 Polarization: -79.59 SS G_CDS: -3.71 Total: -83.30 kcal Atomic # 8 Polarization: -38.46 SS G_CDS: -0.22 Total: -38.68 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: 3.39 SS G_CDS: -1.32 Total: 2.08 kcal Total: -71.05 3.18 -67.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138527551.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.927 kcal (2) G-P(sol) polarization free energy of solvation -71.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds