Wall clock time and date at job start Tue Mar 31 2020 15:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47154 * 2 1 4 4 C 1.53009 * 109.47156 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47015 * 179.97438 * 4 3 2 6 6 C 1.36936 * 119.99720 * 90.00759 * 5 4 3 7 7 H 1.08007 * 120.00069 * 319.85309 * 6 5 4 8 8 C 1.38813 * 120.00421 * 139.85734 * 6 5 4 9 9 N 1.31621 * 119.99508 * 340.10524 * 8 6 5 10 10 Si 1.86797 * 120.00121 * 160.11049 * 8 6 5 11 11 H 1.48498 * 109.47323 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47365 * 119.99845 * 10 8 6 13 13 H 1.48501 * 109.47062 * 239.99651 * 10 8 6 14 14 C 1.46496 * 120.00375 * 269.72079 * 5 4 3 15 15 C 1.50703 * 109.46687 * 87.32950 * 14 5 4 16 16 C 1.38241 * 119.99976 * 263.07810 * 15 14 5 17 17 C 1.38235 * 119.99415 * 179.76765 * 16 15 14 18 18 C 1.38232 * 120.00614 * 0.50664 * 17 16 15 19 19 S 1.76197 * 120.00223 * 179.72340 * 18 17 16 20 20 O 1.42101 * 104.27412 * 26.09536 * 19 18 17 21 21 O 1.42101 * 104.27585 * 153.94894 * 19 18 17 22 22 C 1.81394 * 104.44981 * 270.02242 * 19 18 17 23 23 C 1.52999 * 109.47078 * 180.02562 * 22 19 18 24 24 C 1.38238 * 119.99796 * 359.74757 * 18 17 16 25 25 C 1.38232 * 120.00191 * 83.35236 * 15 14 5 26 26 H 1.09001 * 109.47122 * 59.99552 * 1 2 3 27 27 H 1.08996 * 109.47529 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47264 * 300.00056 * 1 2 3 29 29 H 1.09006 * 109.47162 * 240.00077 * 2 1 3 30 30 H 1.08995 * 109.47264 * 120.00059 * 2 1 3 31 31 H 1.08994 * 109.47307 * 60.00321 * 3 2 1 32 32 H 1.08996 * 109.47121 * 299.99387 * 3 2 1 33 33 H 1.09004 * 109.46604 * 60.00141 * 4 3 2 34 34 H 1.08997 * 109.46696 * 300.00517 * 4 3 2 35 35 H 0.97008 * 119.99525 * 179.97438 * 9 8 6 36 36 H 1.08998 * 109.47563 * 207.32643 * 14 5 4 37 37 H 1.08996 * 109.47145 * 327.33203 * 14 5 4 38 38 H 1.07996 * 119.99857 * 359.97438 * 16 15 14 39 39 H 1.08008 * 119.99417 * 180.22932 * 17 16 15 40 40 H 1.09000 * 109.47453 * 300.00083 * 22 19 18 41 41 H 1.09003 * 109.47006 * 60.00119 * 22 19 18 42 42 H 1.09002 * 109.47670 * 180.02562 * 23 22 19 43 43 H 1.09004 * 109.47039 * 299.99803 * 23 22 19 44 44 H 1.08994 * 109.47349 * 60.00276 * 23 22 19 45 45 H 1.07992 * 120.00106 * 179.97438 * 24 18 17 46 46 H 1.08008 * 119.99964 * 0.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.2862 3.4698 1.1857 7 1 3.6010 3.3420 2.0107 8 6 5.3978 4.2891 1.3273 9 7 6.4217 4.1558 0.5111 10 14 5.4404 5.5806 2.6762 11 1 4.1753 5.5280 3.4521 12 1 6.5877 5.3142 3.5806 13 1 5.5919 6.9268 2.0679 14 6 4.3089 3.5115 -1.2689 15 6 3.0377 4.1663 -1.7448 16 6 2.2364 3.5272 -2.6724 17 6 1.0679 4.1258 -3.1052 18 6 0.7060 5.3679 -2.6184 19 16 -0.7796 6.1340 -3.1757 20 8 -1.6092 5.0479 -3.5649 21 8 -1.1521 6.9943 -2.1078 22 6 -0.2744 7.1004 -4.6252 23 6 -1.4918 7.8222 -5.2064 24 6 1.5101 6.0093 -1.6948 25 6 2.6758 5.4084 -1.2580 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6768 1.9563 -0.8900 33 1 3.9337 0.9285 -0.8892 34 1 3.9330 0.9287 0.8908 35 1 7.1984 4.7286 0.6099 36 1 5.0770 4.2713 -1.1249 37 1 4.6465 2.7900 -2.0128 38 1 2.5215 2.5589 -3.0564 39 1 0.4399 3.6248 -3.8272 40 1 0.4755 7.8341 -4.3294 41 1 0.1466 6.4336 -5.3777 42 1 -1.1884 8.4027 -6.0778 43 1 -2.2420 7.0889 -5.5022 44 1 -1.9124 8.4891 -4.4538 45 1 1.2276 6.9799 -1.3148 46 1 3.3044 5.9099 -0.5369 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001138815162.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:22 Heat of formation + Delta-G solvation = -63.390857 kcal Electronic energy + Delta-G solvation = -26183.131765 eV Core-core repulsion = 22585.303979 eV Total energy + Delta-G solvation = -3597.827786 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.33556 -38.12101 -37.90533 -36.96315 -35.62462 -34.00374 -33.59954 -32.42623 -31.91512 -29.51186 -27.69144 -25.63153 -24.83712 -23.70744 -23.19843 -22.06717 -21.74191 -19.92262 -18.92425 -18.63134 -17.28154 -17.17580 -16.90022 -16.38843 -16.15008 -16.02792 -15.36383 -15.34481 -15.24275 -15.07456 -14.67808 -14.39403 -14.17103 -13.84127 -13.77051 -13.48113 -13.35043 -13.18988 -13.13920 -13.02934 -13.00734 -12.83017 -12.57564 -12.41339 -12.35752 -12.13609 -12.10587 -11.90518 -11.84603 -11.70346 -11.60841 -11.32481 -11.29990 -10.57068 -9.93642 -9.88469 -8.59656 -7.90698 -5.54367 -0.86016 -0.02824 0.44312 1.38775 1.44264 1.53326 1.94488 2.42595 2.56111 3.02338 3.18831 3.19902 3.73392 3.76389 3.83748 3.99051 4.03457 4.12097 4.14429 4.31737 4.40592 4.43316 4.47706 4.49619 4.55187 4.74928 4.79232 4.86670 4.87815 4.88396 4.98110 5.04202 5.06287 5.11189 5.15503 5.16668 5.17647 5.34747 5.39315 5.48540 5.50660 5.62089 5.65683 5.81962 6.01372 6.43277 7.10705 7.76639 8.31587 9.05341 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011192 B = 0.004351 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.161878 B = 6434.196723 C = 7960.041757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C -0.130 4.130 4 C 0.148 3.852 5 N -0.588 5.588 6 C -0.266 4.266 7 H 0.044 0.956 8 C -0.020 4.020 9 N -0.909 5.909 10 Si 0.945 3.055 11 H -0.275 1.275 12 H -0.287 1.287 13 H -0.282 1.282 14 C 0.176 3.824 15 C -0.032 4.032 16 C -0.141 4.141 17 C -0.030 4.030 18 C -0.677 4.677 19 S 2.501 3.499 20 O -0.971 6.971 21 O -0.979 6.979 22 C -0.581 4.581 23 C -0.163 4.163 24 C -0.035 4.035 25 C -0.141 4.141 26 H 0.050 0.950 27 H 0.069 0.931 28 H 0.042 0.958 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.028 0.972 32 H 0.056 0.944 33 H 0.047 0.953 34 H 0.035 0.965 35 H 0.255 0.745 36 H 0.072 0.928 37 H 0.045 0.955 38 H 0.140 0.860 39 H 0.159 0.841 40 H 0.156 0.844 41 H 0.162 0.838 42 H 0.109 0.891 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.145 0.855 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.948 2.721 -13.707 18.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C -0.169 4.169 4 C 0.022 3.978 5 N -0.308 5.308 6 C -0.396 4.396 7 H 0.062 0.938 8 C -0.218 4.218 9 N -0.551 5.551 10 Si 0.773 3.227 11 H -0.199 1.199 12 H -0.214 1.214 13 H -0.208 1.208 14 C 0.050 3.950 15 C -0.035 4.035 16 C -0.161 4.161 17 C -0.048 4.048 18 C -0.763 4.763 19 S 2.685 3.315 20 O -0.968 6.968 21 O -0.976 6.976 22 C -0.714 4.714 23 C -0.222 4.222 24 C -0.054 4.054 25 C -0.161 4.161 26 H 0.069 0.931 27 H 0.088 0.912 28 H 0.062 0.938 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.047 0.953 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.064 0.936 36 H 0.090 0.910 37 H 0.064 0.936 38 H 0.157 0.843 39 H 0.177 0.823 40 H 0.174 0.826 41 H 0.180 0.820 42 H 0.128 0.872 43 H 0.096 0.904 44 H 0.092 0.908 45 H 0.162 0.838 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -12.550 2.648 -13.268 18.454 hybrid contribution 1.411 0.682 1.096 1.912 sum -11.139 3.330 -12.172 16.833 Atomic orbital electron populations 1.21741 0.95430 1.02017 1.01287 1.21443 0.96140 0.95731 1.02080 1.22112 0.97507 0.96857 1.00455 1.21020 0.92560 0.85242 0.98934 1.43831 1.76354 1.09336 1.01244 1.19083 1.03478 1.24884 0.92160 0.93799 1.25750 0.93992 1.02518 0.99583 1.70105 1.04960 1.39183 1.40902 0.85583 0.77538 0.79858 0.79766 1.19942 1.21397 1.20842 1.19919 0.92039 0.96418 0.86590 1.21439 0.98130 0.92857 0.91088 1.21300 0.95282 1.00803 0.98676 1.21105 0.94805 0.92274 0.96644 1.30471 1.23515 1.08694 1.13662 1.05244 0.74007 0.74930 0.77324 1.93503 1.65201 1.53499 1.84597 1.93507 1.81755 1.68376 1.53965 1.30009 1.10195 1.14365 1.16859 1.21777 0.94839 1.01670 1.03870 1.20995 0.91978 0.99436 0.92944 1.21167 0.97894 0.96489 1.00557 0.93064 0.91197 0.93832 0.91114 0.92320 0.95291 0.92534 0.93497 0.94694 0.93554 0.91049 0.93636 0.84271 0.82341 0.82570 0.81954 0.87241 0.90418 0.90816 0.83764 0.87535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 9.91 71.98 0.71 -3.01 16 2 C -0.12 -3.27 5.93 30.59 0.18 -3.09 16 3 C -0.13 -4.70 5.49 30.60 0.17 -4.53 16 4 C 0.15 6.08 5.71 86.38 0.49 6.57 16 5 N -0.59 -28.32 2.39 -706.34 -1.69 -30.01 16 6 C -0.27 -14.28 9.44 84.03 0.79 -13.49 16 7 H 0.04 2.46 7.91 -2.91 -0.02 2.43 16 8 C -0.02 -1.06 4.94 84.86 0.42 -0.64 16 9 N -0.91 -50.71 11.59 21.65 0.25 -50.46 16 10 Si 0.94 43.63 29.60 68.60 2.03 45.66 16 11 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 12 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 13 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 14 C 0.18 7.87 5.43 85.63 0.46 8.33 16 15 C -0.03 -1.23 5.13 -19.86 -0.10 -1.33 16 16 C -0.14 -4.49 7.85 22.27 0.17 -4.31 16 17 C -0.03 -0.83 9.47 22.27 0.21 -0.62 16 18 C -0.68 -19.28 5.66 22.27 0.13 -19.16 16 19 S 2.50 58.49 5.16 -56.49 -0.29 58.20 16 20 O -0.97 -27.46 17.13 -127.65 -2.19 -29.64 16 21 O -0.98 -29.75 17.13 -127.65 -2.19 -31.94 16 22 C -0.58 -7.06 6.70 71.98 0.48 -6.58 16 23 C -0.16 -1.70 9.92 71.98 0.71 -0.98 16 24 C -0.03 -1.13 9.47 22.27 0.21 -0.92 16 25 C -0.14 -5.50 9.73 22.27 0.22 -5.29 16 26 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 30 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.06 2.05 5.83 -2.39 -0.01 2.04 16 33 H 0.05 1.77 7.91 -2.39 -0.02 1.75 16 34 H 0.03 1.51 8.04 -2.39 -0.02 1.49 16 35 H 0.26 13.71 8.31 -92.70 -0.77 12.94 16 36 H 0.07 3.66 5.66 -2.39 -0.01 3.64 16 37 H 0.05 1.90 7.82 -2.39 -0.02 1.88 16 38 H 0.14 3.87 8.06 -2.91 -0.02 3.85 16 39 H 0.16 3.49 7.57 -2.91 -0.02 3.47 16 40 H 0.16 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.16 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.14 4.17 7.57 -2.91 -0.02 4.14 16 46 H 0.11 4.55 8.06 -2.91 -0.02 4.53 16 Total: -1.00 -70.59 387.39 2.13 -68.46 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: 0.94 Total: 18.79 kcal Atomic # 6 Polarization: -54.32 SS G_CDS: 5.27 Total: -49.06 kcal Atomic # 7 Polarization: -79.03 SS G_CDS: -1.44 Total: -80.47 kcal Atomic # 8 Polarization: -57.21 SS G_CDS: -4.37 Total: -61.58 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: 58.49 SS G_CDS: -0.29 Total: 58.20 kcal Total: -70.59 2.13 -68.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138815162.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.066 kcal (2) G-P(sol) polarization free energy of solvation -70.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds