Wall clock time and date at job start Tue Mar 31 2020 13:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37679 * 119.95472 * 2 1 4 4 C 1.39797 * 119.90868 * 180.02562 * 3 2 1 5 5 C 1.47493 * 120.10032 * 179.97438 * 4 3 2 6 6 O 1.21624 * 119.99507 * 25.38200 * 5 4 3 7 7 N 1.34769 * 120.00241 * 205.38193 * 5 4 3 8 8 C 1.36903 * 120.00224 * 2.32468 * 7 5 4 9 9 H 1.08005 * 119.99861 * 50.68345 * 8 7 5 10 10 C 1.39020 * 120.00203 * 230.68033 * 8 7 5 11 11 N 1.31378 * 119.99962 * 193.99870 * 10 8 7 12 12 Si 1.86797 * 120.00032 * 14.00210 * 10 8 7 13 13 H 1.48498 * 109.47080 * 95.41460 * 12 10 8 14 14 H 1.48500 * 109.47423 * 215.41413 * 12 10 8 15 15 H 1.48503 * 109.47234 * 335.41491 * 12 10 8 16 16 C 1.46507 * 119.99823 * 182.05242 * 7 5 4 17 17 C 1.50701 * 109.46811 * 277.98508 * 16 7 5 18 18 C 1.38238 * 119.99979 * 275.17197 * 17 16 7 19 19 C 1.38238 * 119.99827 * 179.76666 * 18 17 16 20 20 C 1.38235 * 119.99920 * 0.49389 * 19 18 17 21 21 C 1.38228 * 119.99904 * 359.78157 * 20 19 18 22 22 C 1.38234 * 120.00452 * 359.96313 * 21 20 19 23 23 C 1.39806 * 119.80958 * 0.27029 * 4 3 2 24 24 C 1.37684 * 119.90106 * 359.47007 * 23 4 3 25 25 C 1.50704 * 119.95375 * 180.27375 * 24 23 4 26 26 C 1.39008 * 120.09810 * 0.51177 * 24 23 4 27 27 O 1.35720 * 119.90967 * 179.74077 * 26 24 23 28 28 H 1.09000 * 109.47161 * 90.00487 * 1 2 3 29 29 H 1.09007 * 109.47636 * 210.00307 * 1 2 3 30 30 H 1.09004 * 109.47303 * 330.00579 * 1 2 3 31 31 H 1.08003 * 120.04887 * 0.03722 * 3 2 1 32 32 H 0.97001 * 120.00150 * 180.02562 * 11 10 8 33 33 H 1.08996 * 109.46947 * 37.98743 * 16 7 5 34 34 H 1.08997 * 109.46879 * 157.98892 * 16 7 5 35 35 H 1.07998 * 120.00024 * 0.02562 * 18 17 16 36 36 H 1.08002 * 119.99619 * 180.25252 * 19 18 17 37 37 H 1.08001 * 119.99744 * 179.77250 * 20 19 18 38 38 H 1.08005 * 119.99701 * 179.97438 * 21 20 19 39 39 H 1.08006 * 120.00368 * 180.02562 * 22 21 20 40 40 H 1.08000 * 120.04711 * 179.72351 * 23 4 3 41 41 H 1.09007 * 109.47415 * 270.24009 * 25 24 23 42 42 H 1.09005 * 109.47123 * 30.23312 * 25 24 23 43 43 H 1.08996 * 109.47807 * 150.23752 * 25 24 23 44 44 H 0.96702 * 113.99850 * 270.02530 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.1929 0.0000 4 6 3.5924 1.1918 -0.0005 5 6 4.3331 2.4672 -0.0011 6 8 3.8157 3.4710 0.4504 7 7 5.5832 2.5203 -0.5019 8 6 6.1478 1.4016 -1.0533 9 1 5.6099 0.8380 -1.8013 10 6 7.4135 0.9912 -0.6506 11 7 8.0700 0.0984 -1.3562 12 14 8.1808 1.7092 0.8937 13 1 7.9197 0.8051 2.0425 14 1 9.6461 1.8510 0.6986 15 1 7.5866 3.0423 1.1680 16 6 6.3357 3.7767 -0.4615 17 6 5.9213 4.6477 -1.6194 18 6 6.5153 4.4816 -2.8565 19 6 6.1318 5.2774 -3.9198 20 6 5.1615 6.2461 -3.7434 21 6 4.5716 6.4160 -2.5049 22 6 4.9513 5.6167 -1.4429 23 6 4.2864 -0.0219 -0.0068 24 6 3.5911 -1.2102 -0.0014 25 6 4.3380 -2.5191 -0.0019 26 6 2.2010 -1.2045 -0.0004 27 8 1.5194 -2.3781 -0.0004 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8901 0.5138 31 1 1.6545 2.1282 0.0006 32 1 8.9530 -0.1883 -1.0751 33 1 6.1285 4.2943 0.4750 34 1 7.4024 3.5636 -0.5307 35 1 7.2761 3.7274 -2.9934 36 1 6.5930 5.1449 -4.8874 37 1 4.8645 6.8703 -4.5732 38 1 3.8138 7.1731 -2.3670 39 1 4.4901 5.7491 -0.4753 40 1 5.3664 -0.0272 -0.0118 41 1 4.5175 -2.8347 -1.0297 42 1 5.2915 -2.3935 0.5113 43 1 3.7456 -3.2758 0.5123 44 1 1.3217 -2.7181 -0.8838 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148556209.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:03 Heat of formation + Delta-G solvation = -17.735289 kcal Electronic energy + Delta-G solvation = -27772.640326 eV Core-core repulsion = 24041.348363 eV Total energy + Delta-G solvation = -3731.291963 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.96531 -39.07774 -38.08916 -35.97127 -35.17271 -33.15611 -32.39835 -31.33508 -30.37371 -30.22264 -26.95259 -26.33922 -25.59489 -25.09833 -22.35916 -22.01362 -20.95630 -20.38303 -19.13020 -17.93193 -17.48846 -16.53296 -16.00808 -15.76196 -15.20497 -14.87204 -14.74642 -14.38101 -14.22376 -13.93632 -13.45320 -13.10471 -12.96544 -12.89580 -12.83935 -12.73163 -12.55127 -12.36918 -12.26966 -12.01343 -11.71608 -11.53562 -11.35975 -11.26302 -11.13364 -10.93876 -10.87749 -10.45654 -10.31331 -9.99959 -9.84903 -9.27293 -8.82504 -8.41236 -8.21012 -8.08734 -7.95126 -7.74932 -6.61749 -4.32512 1.45411 1.81412 1.91631 1.92024 3.00408 3.12159 3.18682 3.55230 3.99525 4.10385 4.34487 4.56935 4.61810 4.81576 5.16561 5.30701 5.34241 5.36205 5.46797 5.54096 5.68628 5.73577 5.79591 5.87396 5.92723 5.99353 6.04608 6.07815 6.12508 6.14138 6.20325 6.25641 6.35815 6.51074 6.57102 6.59158 6.65997 6.87056 6.95290 6.96080 7.05549 7.17196 7.22887 7.28230 7.44418 7.51488 7.94349 7.96390 8.13521 8.79115 9.15923 9.53557 10.45347 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010961 B = 0.005269 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2553.819498 B = 5312.869523 C = 6880.961257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.136 4.136 3 C -0.068 4.068 4 C -0.109 4.109 5 C 0.531 3.469 6 O -0.585 6.585 7 N -0.457 5.457 8 C -0.339 4.339 9 H 0.103 0.897 10 C 0.069 3.931 11 N -0.854 5.854 12 Si 0.855 3.145 13 H -0.273 1.273 14 H -0.279 1.279 15 H -0.245 1.245 16 C 0.147 3.853 17 C -0.088 4.088 18 C -0.094 4.094 19 C -0.131 4.131 20 C -0.130 4.130 21 C -0.133 4.133 22 C -0.096 4.096 23 C -0.058 4.058 24 C -0.130 4.130 25 C -0.103 4.103 26 C 0.107 3.893 27 O -0.497 6.497 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.126 0.874 32 H 0.278 0.722 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.126 0.874 36 H 0.115 0.885 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.125 0.875 40 H 0.180 0.820 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.012 1.020 -1.588 6.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.136 4.136 3 C -0.087 4.087 4 C -0.112 4.112 5 C 0.322 3.678 6 O -0.470 6.470 7 N -0.177 5.177 8 C -0.467 4.467 9 H 0.121 0.879 10 C -0.140 4.140 11 N -0.487 5.487 12 Si 0.680 3.320 13 H -0.198 1.198 14 H -0.204 1.204 15 H -0.169 1.169 16 C 0.025 3.975 17 C -0.089 4.089 18 C -0.113 4.113 19 C -0.149 4.149 20 C -0.148 4.148 21 C -0.151 4.151 22 C -0.114 4.114 23 C -0.075 4.075 24 C -0.130 4.130 25 C -0.160 4.160 26 C 0.063 3.937 27 O -0.306 6.306 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.144 0.856 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.144 0.856 36 H 0.133 0.867 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.143 0.857 40 H 0.197 0.803 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -5.998 1.447 -0.779 6.219 hybrid contribution 0.508 0.067 -0.051 0.515 sum -5.490 1.515 -0.830 5.755 Atomic orbital electron populations 1.20582 0.91176 1.02579 1.01657 1.19903 0.96146 0.92342 1.05233 1.20926 0.93011 0.97095 0.97653 1.19915 0.93109 0.94122 1.04054 1.18332 0.82931 0.87624 0.78919 1.90618 1.69564 1.36490 1.50340 1.43508 1.13099 1.08213 1.52863 1.18995 1.02122 1.03301 1.22265 0.87928 1.25503 0.96232 0.95304 0.96936 1.69697 1.12862 1.29735 1.36444 0.87305 0.79116 0.81620 0.83957 1.19821 1.20411 1.16868 1.20847 0.96096 0.85574 0.95032 1.20403 0.96633 0.95774 0.96122 1.21163 0.99776 0.98073 0.92239 1.21064 0.98489 0.96778 0.98605 1.21017 0.97785 0.98987 0.97032 1.21048 1.00455 1.00230 0.93401 1.21212 0.96172 0.94731 0.99308 1.22689 1.04048 0.89344 0.91445 1.20245 0.92435 0.96644 1.03715 1.20588 0.99650 0.93708 1.02060 1.18315 0.89294 0.84379 1.01728 1.84687 1.76312 1.36732 1.32900 0.91985 0.91383 0.91862 0.85621 0.91196 0.90983 0.90258 0.85639 0.86700 0.86984 0.86852 0.85692 0.80285 0.91617 0.91408 0.91822 0.76325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.35 9.78 36.00 0.35 -1.00 16 2 C -0.14 -2.27 5.89 -104.54 -0.62 -2.89 16 3 C -0.07 -1.29 9.23 -39.20 -0.36 -1.65 16 4 C -0.11 -2.33 5.65 -104.96 -0.59 -2.93 16 5 C 0.53 12.33 7.38 -12.49 -0.09 12.24 16 6 O -0.59 -14.21 15.18 5.26 0.08 -14.13 16 7 N -0.46 -10.44 1.94 -117.29 -0.23 -10.66 16 8 C -0.34 -8.07 6.18 -15.00 -0.09 -8.16 16 9 H 0.10 2.67 7.22 -52.48 -0.38 2.29 16 10 C 0.07 1.64 4.69 -17.46 -0.08 1.56 16 11 N -0.85 -21.31 13.95 55.50 0.77 -20.53 16 12 Si 0.86 18.48 26.43 -169.99 -4.49 13.99 16 13 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 14 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 15 H -0.24 -5.14 4.80 56.52 0.27 -4.87 16 16 C 0.15 3.11 3.31 -5.19 -0.02 3.10 16 17 C -0.09 -1.74 5.36 -104.62 -0.56 -2.30 16 18 C -0.09 -1.75 9.72 -39.58 -0.38 -2.13 16 19 C -0.13 -2.12 10.05 -39.58 -0.40 -2.52 16 20 C -0.13 -1.97 10.05 -39.59 -0.40 -2.37 16 21 C -0.13 -2.14 10.05 -39.59 -0.40 -2.54 16 22 C -0.10 -1.77 9.14 -39.58 -0.36 -2.14 16 23 C -0.06 -1.19 7.71 -39.20 -0.30 -1.49 16 24 C -0.13 -2.36 5.89 -104.54 -0.62 -2.98 16 25 C -0.10 -1.63 9.78 36.01 0.35 -1.28 16 26 C 0.11 1.80 6.66 -39.01 -0.26 1.54 16 27 O -0.50 -6.88 11.56 -18.87 -0.22 -7.10 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.84 7.52 -51.93 -0.39 0.45 16 30 H 0.06 0.78 8.08 -51.93 -0.42 0.36 16 31 H 0.13 2.33 7.85 -52.48 -0.41 1.91 16 32 H 0.28 6.55 8.31 -40.82 -0.34 6.21 16 33 H 0.07 1.53 7.29 -51.93 -0.38 1.15 16 34 H 0.08 1.65 4.94 -51.93 -0.26 1.40 16 35 H 0.13 2.38 8.06 -52.49 -0.42 1.96 16 36 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 38 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 39 H 0.13 2.37 7.46 -52.48 -0.39 1.98 16 40 H 0.18 4.05 4.58 -52.49 -0.24 3.81 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.07 1.10 8.08 -51.93 -0.42 0.68 16 43 H 0.06 0.91 7.52 -51.93 -0.39 0.52 16 44 H 0.38 3.58 9.06 45.56 0.41 4.00 16 LS Contribution 361.02 15.07 5.44 5.44 Total: -1.00 -27.69 361.02 -8.54 -36.23 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: -5.07 Total: 14.69 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: -4.83 Total: -17.93 kcal Atomic # 7 Polarization: -31.75 SS G_CDS: 0.55 Total: -31.20 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -0.14 Total: -21.23 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -4.49 Total: 13.99 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -27.69 -8.54 -36.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148556209.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.497 kcal (2) G-P(sol) polarization free energy of solvation -27.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds