Wall clock time and date at job start Tue Mar 31 2020 13:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37679 * 119.95472 * 2 1 4 4 C 1.39797 * 119.90868 * 180.02562 * 3 2 1 5 5 C 1.47493 * 120.10032 * 179.97438 * 4 3 2 6 6 O 1.21624 * 119.99507 * 25.38200 * 5 4 3 7 7 N 1.34769 * 120.00241 * 205.38193 * 5 4 3 8 8 C 1.36903 * 120.00224 * 2.32468 * 7 5 4 9 9 H 1.08005 * 119.99861 * 50.68345 * 8 7 5 10 10 C 1.39020 * 120.00203 * 230.68033 * 8 7 5 11 11 N 1.31378 * 119.99962 * 193.99870 * 10 8 7 12 12 Si 1.86797 * 120.00032 * 14.00210 * 10 8 7 13 13 H 1.48498 * 109.47080 * 95.41460 * 12 10 8 14 14 H 1.48500 * 109.47423 * 215.41413 * 12 10 8 15 15 H 1.48503 * 109.47234 * 335.41491 * 12 10 8 16 16 C 1.46507 * 119.99823 * 182.05242 * 7 5 4 17 17 C 1.50701 * 109.46811 * 277.98508 * 16 7 5 18 18 C 1.38238 * 119.99979 * 275.17197 * 17 16 7 19 19 C 1.38238 * 119.99827 * 179.76666 * 18 17 16 20 20 C 1.38235 * 119.99920 * 0.49389 * 19 18 17 21 21 C 1.38228 * 119.99904 * 359.78157 * 20 19 18 22 22 C 1.38234 * 120.00452 * 359.96313 * 21 20 19 23 23 C 1.39806 * 119.80958 * 0.27029 * 4 3 2 24 24 C 1.37684 * 119.90106 * 359.47007 * 23 4 3 25 25 C 1.50704 * 119.95375 * 180.27375 * 24 23 4 26 26 C 1.39008 * 120.09810 * 0.51177 * 24 23 4 27 27 O 1.35720 * 119.90967 * 179.74077 * 26 24 23 28 28 H 1.09000 * 109.47161 * 90.00487 * 1 2 3 29 29 H 1.09007 * 109.47636 * 210.00307 * 1 2 3 30 30 H 1.09004 * 109.47303 * 330.00579 * 1 2 3 31 31 H 1.08003 * 120.04887 * 0.03722 * 3 2 1 32 32 H 0.97001 * 120.00150 * 180.02562 * 11 10 8 33 33 H 1.08996 * 109.46947 * 37.98743 * 16 7 5 34 34 H 1.08997 * 109.46879 * 157.98892 * 16 7 5 35 35 H 1.07998 * 120.00024 * 0.02562 * 18 17 16 36 36 H 1.08002 * 119.99619 * 180.25252 * 19 18 17 37 37 H 1.08001 * 119.99744 * 179.77250 * 20 19 18 38 38 H 1.08005 * 119.99701 * 179.97438 * 21 20 19 39 39 H 1.08006 * 120.00368 * 180.02562 * 22 21 20 40 40 H 1.08000 * 120.04711 * 179.72351 * 23 4 3 41 41 H 1.09007 * 109.47415 * 270.24009 * 25 24 23 42 42 H 1.09005 * 109.47123 * 30.23312 * 25 24 23 43 43 H 1.08996 * 109.47807 * 150.23752 * 25 24 23 44 44 H 0.96702 * 113.99850 * 270.02530 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.1929 0.0000 4 6 3.5924 1.1918 -0.0005 5 6 4.3331 2.4672 -0.0011 6 8 3.8157 3.4710 0.4504 7 7 5.5832 2.5203 -0.5019 8 6 6.1478 1.4016 -1.0533 9 1 5.6099 0.8380 -1.8013 10 6 7.4135 0.9912 -0.6506 11 7 8.0700 0.0984 -1.3562 12 14 8.1808 1.7092 0.8937 13 1 7.9197 0.8051 2.0425 14 1 9.6461 1.8510 0.6986 15 1 7.5866 3.0423 1.1680 16 6 6.3357 3.7767 -0.4615 17 6 5.9213 4.6477 -1.6194 18 6 6.5153 4.4816 -2.8565 19 6 6.1318 5.2774 -3.9198 20 6 5.1615 6.2461 -3.7434 21 6 4.5716 6.4160 -2.5049 22 6 4.9513 5.6167 -1.4429 23 6 4.2864 -0.0219 -0.0068 24 6 3.5911 -1.2102 -0.0014 25 6 4.3380 -2.5191 -0.0019 26 6 2.2010 -1.2045 -0.0004 27 8 1.5194 -2.3781 -0.0004 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8901 0.5138 31 1 1.6545 2.1282 0.0006 32 1 8.9530 -0.1883 -1.0751 33 1 6.1285 4.2943 0.4750 34 1 7.4024 3.5636 -0.5307 35 1 7.2761 3.7274 -2.9934 36 1 6.5930 5.1449 -4.8874 37 1 4.8645 6.8703 -4.5732 38 1 3.8138 7.1731 -2.3670 39 1 4.4901 5.7491 -0.4753 40 1 5.3664 -0.0272 -0.0118 41 1 4.5175 -2.8347 -1.0297 42 1 5.2915 -2.3935 0.5113 43 1 3.7456 -3.2758 0.5123 44 1 1.3217 -2.7181 -0.8838 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148556209.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:02 Heat of formation + Delta-G solvation = -32.212402 kcal Electronic energy + Delta-G solvation = -27773.268101 eV Core-core repulsion = 24041.348363 eV Total energy + Delta-G solvation = -3731.919738 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.52859 -40.50779 -39.55429 -37.30069 -36.97205 -34.49761 -34.17216 -32.87035 -31.71791 -31.62417 -28.27244 -27.78559 -27.07249 -26.88502 -23.87243 -23.37603 -22.37095 -21.76000 -20.88241 -19.23299 -19.17011 -18.09257 -17.54891 -17.34712 -16.54790 -16.37097 -16.26651 -15.92578 -15.80632 -15.53918 -14.86113 -14.64741 -14.49668 -14.23650 -14.18450 -14.05510 -14.01907 -13.82081 -13.65872 -13.42225 -13.14647 -12.97972 -12.86134 -12.71384 -12.63714 -12.49147 -12.27955 -11.99675 -11.83697 -11.59361 -11.32547 -11.04074 -10.60637 -9.77034 -9.67073 -9.61987 -9.44483 -9.36984 -8.50575 -6.21929 -0.02657 0.44844 0.46912 0.55957 1.22058 1.32959 1.39707 1.91619 2.17959 2.53644 2.72170 3.04988 3.07052 3.33739 3.89617 3.91893 3.95512 4.00839 4.07038 4.20826 4.33852 4.35173 4.40043 4.53942 4.57725 4.69410 4.72443 4.76250 4.81193 4.82035 4.84001 4.92810 4.99948 5.14609 5.21942 5.23246 5.35647 5.44812 5.48277 5.60834 5.62307 5.63467 5.68218 5.82842 5.96504 6.08449 6.17896 6.21750 6.88132 6.91874 7.31902 7.71168 8.59865 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010961 B = 0.005269 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2553.819498 B = 5312.869523 C = 6880.961257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.131 4.131 3 C -0.074 4.074 4 C -0.140 4.140 5 C 0.523 3.477 6 O -0.604 6.604 7 N -0.462 5.462 8 C -0.323 4.323 9 H 0.074 0.926 10 C 0.045 3.955 11 N -0.884 5.884 12 Si 0.894 3.106 13 H -0.278 1.278 14 H -0.271 1.271 15 H -0.241 1.241 16 C 0.147 3.853 17 C -0.111 4.111 18 C -0.112 4.112 19 C -0.129 4.129 20 C -0.120 4.120 21 C -0.130 4.130 22 C -0.112 4.112 23 C -0.074 4.074 24 C -0.139 4.139 25 C -0.098 4.098 26 C 0.124 3.876 27 O -0.491 6.491 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.126 0.874 32 H 0.281 0.719 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.111 0.889 36 H 0.143 0.857 37 H 0.153 0.847 38 H 0.143 0.857 39 H 0.112 0.888 40 H 0.155 0.845 41 H 0.073 0.927 42 H 0.055 0.945 43 H 0.083 0.917 44 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.046 1.159 -2.599 8.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.131 4.131 3 C -0.093 4.093 4 C -0.143 4.143 5 C 0.314 3.686 6 O -0.490 6.490 7 N -0.181 5.181 8 C -0.451 4.451 9 H 0.092 0.908 10 C -0.161 4.161 11 N -0.520 5.520 12 Si 0.718 3.282 13 H -0.204 1.204 14 H -0.196 1.196 15 H -0.164 1.164 16 C 0.025 3.975 17 C -0.112 4.112 18 C -0.131 4.131 19 C -0.147 4.147 20 C -0.138 4.138 21 C -0.148 4.148 22 C -0.131 4.131 23 C -0.092 4.092 24 C -0.139 4.139 25 C -0.154 4.154 26 C 0.079 3.921 27 O -0.304 6.304 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.144 0.856 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.129 0.871 36 H 0.161 0.839 37 H 0.171 0.829 38 H 0.161 0.839 39 H 0.130 0.870 40 H 0.172 0.828 41 H 0.092 0.908 42 H 0.074 0.926 43 H 0.102 0.898 44 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -8.032 1.580 -1.810 8.384 hybrid contribution 0.997 -0.022 0.203 1.018 sum -7.035 1.558 -1.606 7.382 Atomic orbital electron populations 1.20652 0.88053 1.03586 1.03273 1.20285 0.98270 0.91327 1.03248 1.21012 0.92040 0.98281 0.98002 1.19942 0.94260 0.93376 1.06694 1.18754 0.83049 0.88287 0.78461 1.90577 1.69919 1.37307 1.51228 1.43577 1.13249 1.08517 1.52777 1.18600 1.01751 1.03550 1.21223 0.90799 1.25803 0.96409 0.95497 0.98363 1.69737 1.13460 1.31081 1.37701 0.86690 0.78868 0.81152 0.81473 1.20438 1.19601 1.16435 1.20815 0.95740 0.85229 0.95750 1.20304 0.98187 0.96674 0.96014 1.21163 1.00162 0.98920 0.92867 1.21402 0.98401 0.96027 0.98846 1.21468 0.96246 0.98333 0.97708 1.21401 1.00570 0.99884 0.92929 1.21211 0.96422 0.95543 0.99889 1.22388 1.02962 0.90433 0.93448 1.20476 0.93603 0.96534 1.03316 1.20582 0.99154 0.93016 1.02693 1.18259 0.88711 0.85464 0.99664 1.84625 1.75524 1.35243 1.35001 0.89914 0.90128 0.91129 0.85565 0.90878 0.91745 0.90569 0.87095 0.83938 0.82919 0.83907 0.86995 0.82836 0.90797 0.92620 0.89770 0.73358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.26 9.78 71.23 0.70 -1.56 16 2 C -0.13 -4.13 5.89 -19.81 -0.12 -4.25 16 3 C -0.07 -2.83 9.23 22.51 0.21 -2.62 16 4 C -0.14 -6.20 5.65 -20.08 -0.11 -6.32 16 5 C 0.52 25.40 7.38 86.68 0.64 26.04 16 6 O -0.60 -30.52 15.18 -4.11 -0.06 -30.58 16 7 N -0.46 -22.16 1.94 -643.25 -1.25 -23.41 16 8 C -0.32 -16.22 6.18 84.09 0.52 -15.70 16 9 H 0.07 4.10 7.22 -2.91 -0.02 4.08 16 10 C 0.05 2.26 4.69 84.95 0.40 2.65 16 11 N -0.88 -45.80 13.95 21.68 0.30 -45.49 16 12 Si 0.89 39.35 26.43 68.60 1.81 41.16 16 13 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 14 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 15 H -0.24 -10.35 4.80 99.48 0.48 -9.87 16 16 C 0.15 6.52 3.31 85.63 0.28 6.81 16 17 C -0.11 -4.50 5.36 -19.86 -0.11 -4.61 16 18 C -0.11 -4.24 9.72 22.27 0.22 -4.02 16 19 C -0.13 -3.92 10.05 22.27 0.22 -3.70 16 20 C -0.12 -3.24 10.05 22.27 0.22 -3.02 16 21 C -0.13 -3.91 10.05 22.27 0.22 -3.69 16 22 C -0.11 -4.19 9.14 22.27 0.20 -3.98 16 23 C -0.07 -3.19 7.71 22.52 0.17 -3.02 16 24 C -0.14 -5.00 5.89 -19.81 -0.12 -5.12 16 25 C -0.10 -3.01 9.78 71.24 0.70 -2.32 16 26 C 0.12 3.90 6.66 22.64 0.15 4.05 16 27 O -0.49 -11.78 11.56 -90.42 -1.05 -12.83 16 28 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.08 1.66 7.52 -2.38 -0.02 1.65 16 30 H 0.07 1.53 8.08 -2.38 -0.02 1.51 16 31 H 0.13 4.70 7.85 -2.91 -0.02 4.67 16 32 H 0.28 13.67 8.31 -92.71 -0.77 12.90 16 33 H 0.06 2.89 7.29 -2.39 -0.02 2.87 16 34 H 0.08 3.34 4.94 -2.39 -0.01 3.32 16 35 H 0.11 4.41 8.06 -2.91 -0.02 4.38 16 36 H 0.14 3.49 8.06 -2.91 -0.02 3.46 16 37 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 38 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 39 H 0.11 4.40 7.46 -2.91 -0.02 4.38 16 40 H 0.15 7.38 4.58 -2.91 -0.01 7.37 16 41 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 42 H 0.05 1.83 8.08 -2.38 -0.02 1.81 16 43 H 0.08 2.21 7.52 -2.39 -0.02 2.20 16 44 H 0.41 5.88 9.06 -74.06 -0.67 5.21 16 Total: -1.00 -62.44 361.02 4.30 -58.13 By element: Atomic # 1 Polarization: 37.25 SS G_CDS: 0.14 Total: 37.38 kcal Atomic # 6 Polarization: -28.77 SS G_CDS: 4.41 Total: -24.37 kcal Atomic # 7 Polarization: -67.96 SS G_CDS: -0.94 Total: -68.90 kcal Atomic # 8 Polarization: -42.30 SS G_CDS: -1.11 Total: -43.41 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 1.81 Total: 41.16 kcal Total: -62.44 4.30 -58.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148556209.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.921 kcal (2) G-P(sol) polarization free energy of solvation -62.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds