Wall clock time and date at job start Tue Mar 31 2020 13:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35653 * 117.00321 * 2 1 4 4 C 1.38684 * 120.14980 * 359.72615 * 3 2 1 5 5 C 1.38080 * 120.08588 * 179.72255 * 4 3 2 6 6 C 1.50703 * 119.79741 * 180.27324 * 5 4 3 7 7 C 1.38558 * 120.40635 * 0.55586 * 5 4 3 8 8 C 1.37774 * 120.30001 * 359.71833 * 7 5 4 9 9 C 1.39771 * 119.90439 * 0.02562 * 8 7 5 10 10 C 1.47425 * 120.19485 * 179.97438 * 9 8 7 11 11 O 1.21628 * 119.99880 * 127.90976 * 10 9 8 12 12 N 1.34781 * 120.00370 * 307.90377 * 10 9 8 13 13 C 1.36902 * 119.99797 * 3.08166 * 12 10 9 14 14 H 1.08000 * 119.99714 * 311.91604 * 13 12 10 15 15 C 1.39023 * 119.99976 * 131.92025 * 13 12 10 16 16 N 1.31381 * 119.99660 * 349.70022 * 15 13 12 17 17 Si 1.86800 * 119.99988 * 169.69726 * 15 13 12 18 18 H 1.48498 * 109.47023 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47094 * 119.99903 * 17 15 13 20 20 H 1.48498 * 109.47128 * 240.00288 * 17 15 13 21 21 C 1.46500 * 120.00049 * 183.07828 * 12 10 9 22 22 C 1.50705 * 109.46937 * 84.62335 * 21 12 10 23 23 C 1.38236 * 119.99886 * 263.88175 * 22 21 12 24 24 C 1.38237 * 119.99498 * 179.76572 * 23 22 21 25 25 C 1.38236 * 119.99842 * 0.51375 * 24 23 22 26 26 C 1.38236 * 120.00369 * 359.73996 * 25 24 23 27 27 C 1.38233 * 119.99790 * 0.02562 * 26 25 24 28 28 H 1.09005 * 109.47498 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47244 * 60.00063 * 1 2 3 30 30 H 1.09001 * 109.47445 * 300.00085 * 1 2 3 31 31 H 1.07997 * 119.95668 * 359.97438 * 4 3 2 32 32 H 1.09000 * 109.47620 * 270.27756 * 6 5 4 33 33 H 1.09001 * 109.47097 * 30.28082 * 6 5 4 34 34 H 1.09008 * 109.46974 * 150.27440 * 6 5 4 35 35 H 1.07995 * 119.85454 * 179.69902 * 7 5 4 36 36 H 1.07998 * 120.04884 * 179.97438 * 8 7 5 37 37 H 0.97008 * 119.99364 * 180.02562 * 16 15 13 38 38 H 1.08999 * 109.47476 * 204.62419 * 21 12 10 39 39 H 1.08998 * 109.47190 * 324.62745 * 21 12 10 40 40 H 1.07991 * 120.00117 * 0.02562 * 23 22 21 41 41 H 1.07994 * 120.00081 * 180.23151 * 24 23 22 42 42 H 1.08007 * 119.99731 * 179.72451 * 25 24 23 43 43 H 1.07999 * 119.99979 * 179.97438 * 26 25 24 44 44 H 1.07999 * 119.99788 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 1.2927 2.3737 -0.0057 5 6 1.9210 3.6033 0.0001 6 6 1.0972 4.8653 0.0000 7 6 3.3042 3.6841 0.0000 8 6 4.0675 2.5371 0.0000 9 6 3.4448 1.2857 -0.0004 10 6 4.2553 0.0542 -0.0010 11 8 4.0490 -0.8099 0.8297 12 7 5.2247 -0.1142 -0.9221 13 6 5.4992 0.8845 -1.8173 14 1 4.6945 1.3638 -2.3551 15 6 6.8137 1.2816 -2.0343 16 7 7.7696 0.8488 -1.2437 17 14 7.2208 2.4305 -3.4499 18 1 5.9761 2.7707 -4.1848 19 1 7.8362 3.6728 -2.9178 20 1 8.1735 1.7616 -4.3719 21 6 5.9848 -1.3659 -0.9651 22 6 5.2269 -2.3861 -1.7750 23 6 4.4176 -3.3098 -1.1403 24 6 3.7187 -4.2425 -1.8837 25 6 3.8374 -4.2582 -3.2608 26 6 4.6508 -3.3379 -3.8951 27 6 5.3459 -2.4021 -3.1522 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 0.5138 0.8900 31 1 0.2141 2.3193 -0.0106 32 1 0.8985 5.1696 -1.0276 33 1 0.1533 4.6830 0.5139 34 1 1.6438 5.6560 0.5139 35 1 3.7863 4.6504 -0.0003 36 1 5.1453 2.6047 -0.0004 37 1 8.6868 1.1262 -1.3949 38 1 6.9562 -1.1855 -1.4254 39 1 6.1269 -1.7397 0.0488 40 1 4.3282 -3.3000 -0.0642 41 1 3.0836 -4.9617 -1.3882 42 1 3.2948 -4.9898 -3.8412 43 1 4.7438 -3.3505 -4.9710 44 1 5.9817 -1.6833 -3.6477 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148570531.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:06 Heat of formation + Delta-G solvation = -18.754031 kcal Electronic energy + Delta-G solvation = -27981.921126 eV Core-core repulsion = 24250.584986 eV Total energy + Delta-G solvation = -3731.336139 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.92569 -38.80874 -37.72632 -36.97827 -34.72826 -32.39687 -31.85807 -30.49746 -30.22376 -29.64978 -27.68061 -26.72184 -25.58568 -24.34641 -21.87270 -21.75694 -21.59898 -20.57523 -19.28179 -17.80572 -16.82975 -16.30621 -15.82225 -15.60405 -15.31686 -14.79644 -14.58429 -14.48872 -14.17898 -13.86225 -13.74314 -13.57629 -13.41534 -13.18682 -12.75756 -12.64442 -12.21901 -12.03539 -11.97198 -11.73709 -11.62440 -11.43017 -11.25708 -11.10224 -10.92742 -10.78197 -10.59044 -10.51865 -10.36921 -10.31274 -10.11156 -9.12958 -8.58479 -8.26807 -8.22441 -8.02879 -7.61785 -7.39341 -6.38411 -4.17854 1.67499 1.97983 1.99836 2.06306 3.08862 3.19711 3.23763 3.70781 3.86300 4.08092 4.31214 4.47368 4.91505 4.97162 5.07727 5.26886 5.30099 5.36095 5.43549 5.47064 5.53056 5.62871 5.67073 5.70522 5.72101 5.90520 5.93125 5.95165 6.14448 6.17373 6.24187 6.28908 6.47548 6.55940 6.66876 6.76424 6.85841 6.90941 7.08148 7.09104 7.10886 7.18913 7.35956 7.43382 7.50635 7.68545 7.88048 8.02504 8.38727 9.05815 9.50187 9.95816 10.64883 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009259 B = 0.006245 C = 0.004302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3023.314369 B = 4482.411370 C = 6506.858701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.296 6.296 3 C 0.158 3.842 4 C -0.226 4.226 5 C -0.049 4.049 6 C -0.111 4.111 7 C -0.174 4.174 8 C -0.016 4.016 9 C -0.121 4.121 10 C 0.533 3.467 11 O -0.584 6.584 12 N -0.430 5.430 13 C -0.329 4.329 14 H 0.083 0.917 15 C 0.047 3.953 16 N -0.863 5.863 17 Si 0.908 3.092 18 H -0.267 1.267 19 H -0.279 1.279 20 H -0.279 1.279 21 C 0.157 3.843 22 C -0.080 4.080 23 C -0.099 4.099 24 C -0.132 4.132 25 C -0.135 4.135 26 C -0.133 4.133 27 C -0.097 4.097 28 H 0.094 0.906 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.122 0.878 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.120 0.880 36 H 0.144 0.856 37 H 0.270 0.730 38 H 0.105 0.895 39 H 0.063 0.937 40 H 0.123 0.877 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.112 0.888 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.366 1.434 -1.705 9.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.208 6.208 3 C 0.112 3.888 4 C -0.245 4.245 5 C -0.050 4.050 6 C -0.168 4.168 7 C -0.192 4.192 8 C -0.035 4.035 9 C -0.125 4.125 10 C 0.321 3.679 11 O -0.468 6.468 12 N -0.148 5.148 13 C -0.458 4.458 14 H 0.101 0.899 15 C -0.159 4.159 16 N -0.499 5.499 17 Si 0.734 3.266 18 H -0.191 1.191 19 H -0.205 1.205 20 H -0.205 1.205 21 C 0.034 3.966 22 C -0.082 4.082 23 C -0.117 4.117 24 C -0.150 4.150 25 C -0.154 4.154 26 C -0.152 4.152 27 C -0.116 4.116 28 H 0.113 0.887 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.140 0.860 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.138 0.862 36 H 0.162 0.838 37 H 0.080 0.920 38 H 0.122 0.878 39 H 0.081 0.919 40 H 0.141 0.859 41 H 0.129 0.871 42 H 0.128 0.872 43 H 0.130 0.870 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.134 0.819 -1.273 9.258 hybrid contribution -0.014 0.793 -0.937 1.228 sum -9.148 1.612 -2.211 9.548 Atomic orbital electron populations 1.22986 0.79635 1.03405 1.00649 1.86223 1.20123 1.26559 1.87925 1.19001 0.91181 0.84087 0.94574 1.20827 0.99152 0.91712 1.12804 1.19656 0.94012 0.94064 0.97240 1.20772 0.99021 0.94937 1.02022 1.20832 0.92805 0.98460 1.07140 1.21320 1.01010 0.89791 0.91360 1.19332 0.89965 0.95552 1.07615 1.18118 0.82669 0.85646 0.81417 1.90616 1.71723 1.44839 1.39653 1.43129 1.31342 1.12422 1.27946 1.19343 0.92842 1.13816 1.19751 0.89909 1.25498 0.96162 0.96975 0.97264 1.69873 1.01212 1.43393 1.35448 0.86155 0.78939 0.80118 0.81394 1.19069 1.20492 1.20489 1.20273 0.95502 0.82551 0.98265 1.20671 0.97355 0.95746 0.94394 1.21234 0.95697 0.94475 1.00315 1.21028 1.00384 0.99547 0.94062 1.20952 1.00137 0.99613 0.94674 1.21032 0.98443 0.96563 0.99120 1.21112 0.99177 0.97517 0.93801 0.88720 0.93185 0.93088 0.86007 0.91346 0.92027 0.91582 0.86224 0.83780 0.92002 0.87754 0.91902 0.85915 0.87075 0.87235 0.87022 0.86083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.81 101.05 0.99 1.38 16 2 O -0.30 -5.96 9.63 -24.42 -0.24 -6.19 16 3 C 0.16 3.22 6.68 -38.68 -0.26 2.96 16 4 C -0.23 -3.75 8.67 -39.47 -0.34 -4.09 16 5 C -0.05 -0.77 5.88 -104.56 -0.62 -1.38 16 6 C -0.11 -1.25 10.00 36.01 0.36 -0.89 16 7 C -0.17 -2.96 9.67 -39.63 -0.38 -3.34 16 8 C -0.02 -0.33 8.28 -39.18 -0.32 -0.66 16 9 C -0.12 -2.75 5.01 -104.85 -0.53 -3.27 16 10 C 0.53 13.62 6.80 -12.52 -0.09 13.53 16 11 O -0.58 -16.02 15.99 -0.51 -0.01 -16.03 16 12 N -0.43 -10.81 2.44 -117.31 -0.29 -11.10 16 13 C -0.33 -8.13 6.64 -15.00 -0.10 -8.23 16 14 H 0.08 2.09 7.45 -52.49 -0.39 1.70 16 15 C 0.05 1.14 5.09 -17.45 -0.09 1.05 16 16 N -0.86 -21.86 11.67 55.50 0.65 -21.21 16 17 Si 0.91 18.95 29.57 -169.99 -5.03 13.92 16 18 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 19 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 20 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 21 C 0.16 3.76 5.00 -5.19 -0.03 3.73 16 22 C -0.08 -1.74 5.42 -104.62 -0.57 -2.30 16 23 C -0.10 -2.01 9.60 -39.58 -0.38 -2.39 16 24 C -0.13 -2.31 10.05 -39.58 -0.40 -2.71 16 25 C -0.14 -2.21 10.05 -39.58 -0.40 -2.61 16 26 C -0.13 -2.30 10.05 -39.58 -0.40 -2.70 16 27 C -0.10 -1.94 9.73 -39.58 -0.38 -2.33 16 28 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.05 0.60 7.65 -51.93 -0.40 0.20 16 30 H 0.05 0.61 7.67 -51.93 -0.40 0.21 16 31 H 0.12 1.65 6.30 -52.49 -0.33 1.32 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 34 H 0.07 0.67 8.08 -51.92 -0.42 0.25 16 35 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 36 H 0.14 3.13 7.25 -52.49 -0.38 2.75 16 37 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 38 H 0.10 2.59 6.01 -51.93 -0.31 2.28 16 39 H 0.06 1.56 7.45 -51.93 -0.39 1.17 16 40 H 0.12 2.60 7.81 -52.49 -0.41 2.19 16 41 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 42 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 43 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 44 H 0.12 2.42 8.06 -52.49 -0.42 2.00 16 LS Contribution 371.67 15.07 5.60 5.60 Total: -1.00 -29.95 371.67 -9.17 -39.12 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -5.94 Total: 10.12 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: -3.92 Total: -14.24 kcal Atomic # 7 Polarization: -32.67 SS G_CDS: 0.36 Total: -32.31 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -0.24 Total: -22.22 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.92 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.95 -9.17 -39.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148570531.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.369 kcal (2) G-P(sol) polarization free energy of solvation -29.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds