Wall clock time and date at job start Tue Mar 31 2020 13:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35653 * 117.00321 * 2 1 4 4 C 1.38684 * 120.14980 * 359.72615 * 3 2 1 5 5 C 1.38080 * 120.08588 * 179.72255 * 4 3 2 6 6 C 1.50703 * 119.79741 * 180.27324 * 5 4 3 7 7 C 1.38558 * 120.40635 * 0.55586 * 5 4 3 8 8 C 1.37774 * 120.30001 * 359.71833 * 7 5 4 9 9 C 1.39771 * 119.90439 * 0.02562 * 8 7 5 10 10 C 1.47425 * 120.19485 * 179.97438 * 9 8 7 11 11 O 1.21628 * 119.99880 * 127.90976 * 10 9 8 12 12 N 1.34781 * 120.00370 * 307.90377 * 10 9 8 13 13 C 1.36902 * 119.99797 * 3.08166 * 12 10 9 14 14 H 1.08000 * 119.99714 * 311.91604 * 13 12 10 15 15 C 1.39023 * 119.99976 * 131.92025 * 13 12 10 16 16 N 1.31381 * 119.99660 * 349.70022 * 15 13 12 17 17 Si 1.86800 * 119.99988 * 169.69726 * 15 13 12 18 18 H 1.48498 * 109.47023 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47094 * 119.99903 * 17 15 13 20 20 H 1.48498 * 109.47128 * 240.00288 * 17 15 13 21 21 C 1.46500 * 120.00049 * 183.07828 * 12 10 9 22 22 C 1.50705 * 109.46937 * 84.62335 * 21 12 10 23 23 C 1.38236 * 119.99886 * 263.88175 * 22 21 12 24 24 C 1.38237 * 119.99498 * 179.76572 * 23 22 21 25 25 C 1.38236 * 119.99842 * 0.51375 * 24 23 22 26 26 C 1.38236 * 120.00369 * 359.73996 * 25 24 23 27 27 C 1.38233 * 119.99790 * 0.02562 * 26 25 24 28 28 H 1.09005 * 109.47498 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47244 * 60.00063 * 1 2 3 30 30 H 1.09001 * 109.47445 * 300.00085 * 1 2 3 31 31 H 1.07997 * 119.95668 * 359.97438 * 4 3 2 32 32 H 1.09000 * 109.47620 * 270.27756 * 6 5 4 33 33 H 1.09001 * 109.47097 * 30.28082 * 6 5 4 34 34 H 1.09008 * 109.46974 * 150.27440 * 6 5 4 35 35 H 1.07995 * 119.85454 * 179.69902 * 7 5 4 36 36 H 1.07998 * 120.04884 * 179.97438 * 8 7 5 37 37 H 0.97008 * 119.99364 * 180.02562 * 16 15 13 38 38 H 1.08999 * 109.47476 * 204.62419 * 21 12 10 39 39 H 1.08998 * 109.47190 * 324.62745 * 21 12 10 40 40 H 1.07991 * 120.00117 * 0.02562 * 23 22 21 41 41 H 1.07994 * 120.00081 * 180.23151 * 24 23 22 42 42 H 1.08007 * 119.99731 * 179.72451 * 25 24 23 43 43 H 1.07999 * 119.99979 * 179.97438 * 26 25 24 44 44 H 1.07999 * 119.99788 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 1.2927 2.3737 -0.0057 5 6 1.9210 3.6033 0.0001 6 6 1.0972 4.8653 0.0000 7 6 3.3042 3.6841 0.0000 8 6 4.0675 2.5371 0.0000 9 6 3.4448 1.2857 -0.0004 10 6 4.2553 0.0542 -0.0010 11 8 4.0490 -0.8099 0.8297 12 7 5.2247 -0.1142 -0.9221 13 6 5.4992 0.8845 -1.8173 14 1 4.6945 1.3638 -2.3551 15 6 6.8137 1.2816 -2.0343 16 7 7.7696 0.8488 -1.2437 17 14 7.2208 2.4305 -3.4499 18 1 5.9761 2.7707 -4.1848 19 1 7.8362 3.6728 -2.9178 20 1 8.1735 1.7616 -4.3719 21 6 5.9848 -1.3659 -0.9651 22 6 5.2269 -2.3861 -1.7750 23 6 4.4176 -3.3098 -1.1403 24 6 3.7187 -4.2425 -1.8837 25 6 3.8374 -4.2582 -3.2608 26 6 4.6508 -3.3379 -3.8951 27 6 5.3459 -2.4021 -3.1522 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 0.5138 0.8900 31 1 0.2141 2.3193 -0.0106 32 1 0.8985 5.1696 -1.0276 33 1 0.1533 4.6830 0.5139 34 1 1.6438 5.6560 0.5139 35 1 3.7863 4.6504 -0.0003 36 1 5.1453 2.6047 -0.0004 37 1 8.6868 1.1262 -1.3949 38 1 6.9562 -1.1855 -1.4254 39 1 6.1269 -1.7397 0.0488 40 1 4.3282 -3.3000 -0.0642 41 1 3.0836 -4.9617 -1.3882 42 1 3.2948 -4.9898 -3.8412 43 1 4.7438 -3.3505 -4.9710 44 1 5.9817 -1.6833 -3.6477 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148570531.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:05 Heat of formation + Delta-G solvation = -33.860994 kcal Electronic energy + Delta-G solvation = -27982.576213 eV Core-core repulsion = 24250.584986 eV Total energy + Delta-G solvation = -3731.991226 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.45033 -40.39804 -39.36600 -38.37598 -36.65774 -33.83016 -33.65688 -32.11866 -31.70378 -31.03688 -28.83490 -28.09111 -27.34350 -26.06915 -23.35944 -23.20623 -22.99470 -22.09383 -21.09162 -19.50545 -18.27190 -17.91337 -17.33920 -17.23006 -16.66775 -16.49413 -16.30884 -16.03237 -15.76092 -15.41312 -15.19281 -15.08498 -14.55917 -14.39228 -14.30788 -14.21487 -13.73943 -13.60208 -13.20567 -13.09230 -13.00798 -12.93392 -12.88899 -12.77388 -12.54689 -12.28179 -12.07040 -11.95143 -11.88680 -11.77359 -11.73337 -11.03014 -10.45601 -9.75076 -9.65245 -9.58202 -9.36360 -9.03961 -8.27971 -6.14204 0.22932 0.50248 0.55772 0.57207 1.40805 1.45322 1.57612 2.10291 2.31244 2.43949 2.76004 2.88026 3.12452 3.25514 3.87501 4.00979 4.03893 4.12684 4.21326 4.23203 4.30689 4.35480 4.37786 4.42883 4.46468 4.56111 4.66358 4.72841 4.78631 4.82822 4.87556 4.91781 4.98205 5.12368 5.21475 5.24737 5.28876 5.36626 5.47068 5.55526 5.63469 5.64817 5.68171 5.90043 5.96691 6.10148 6.21064 6.42942 6.55438 7.12502 7.56917 8.03995 8.76717 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009259 B = 0.006245 C = 0.004302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3023.314369 B = 4482.411370 C = 6506.858701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.336 6.336 3 C 0.146 3.854 4 C -0.219 4.219 5 C -0.035 4.035 6 C -0.108 4.108 7 C -0.173 4.173 8 C -0.030 4.030 9 C -0.169 4.169 10 C 0.519 3.481 11 O -0.621 6.621 12 N -0.437 5.437 13 C -0.332 4.332 14 H 0.075 0.925 15 C 0.013 3.987 16 N -0.896 5.896 17 Si 0.973 3.027 18 H -0.261 1.261 19 H -0.274 1.274 20 H -0.276 1.276 21 C 0.165 3.835 22 C -0.105 4.105 23 C -0.120 4.120 24 C -0.128 4.128 25 C -0.122 4.122 26 C -0.126 4.126 27 C -0.114 4.114 28 H 0.109 0.891 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.159 0.841 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.148 0.852 36 H 0.116 0.884 37 H 0.272 0.728 38 H 0.088 0.912 39 H 0.033 0.967 40 H 0.099 0.901 41 H 0.141 0.859 42 H 0.156 0.844 43 H 0.148 0.852 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.460 2.743 -4.040 13.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.249 6.249 3 C 0.099 3.901 4 C -0.238 4.238 5 C -0.035 4.035 6 C -0.164 4.164 7 C -0.191 4.191 8 C -0.049 4.049 9 C -0.172 4.172 10 C 0.309 3.691 11 O -0.509 6.509 12 N -0.154 5.154 13 C -0.460 4.460 14 H 0.093 0.907 15 C -0.191 4.191 16 N -0.533 5.533 17 Si 0.797 3.203 18 H -0.185 1.185 19 H -0.199 1.199 20 H -0.201 1.201 21 C 0.042 3.958 22 C -0.106 4.106 23 C -0.138 4.138 24 C -0.146 4.146 25 C -0.140 4.140 26 C -0.143 4.143 27 C -0.133 4.133 28 H 0.127 0.873 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.177 0.823 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.166 0.834 36 H 0.134 0.866 37 H 0.082 0.918 38 H 0.106 0.894 39 H 0.052 0.948 40 H 0.117 0.883 41 H 0.159 0.841 42 H 0.174 0.826 43 H 0.166 0.834 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -12.236 2.133 -3.617 12.937 hybrid contribution 0.844 0.345 -0.172 0.928 sum -11.392 2.478 -3.789 12.258 Atomic orbital electron populations 1.23349 0.76538 1.05171 1.02488 1.86165 1.23507 1.27209 1.87998 1.19194 0.90584 0.85504 0.94769 1.21226 1.00744 0.90593 1.11198 1.20222 0.93717 0.95755 0.93842 1.20881 0.99260 0.92649 1.03657 1.21132 0.93736 0.98131 1.06148 1.21135 1.00020 0.90655 0.93111 1.19318 0.91362 0.94717 1.11831 1.18769 0.82917 0.86571 0.80826 1.90547 1.72854 1.46517 1.40964 1.43338 1.31258 1.12870 1.27921 1.19322 0.92994 1.14107 1.19597 0.90711 1.26215 0.95515 0.98086 0.99247 1.69988 1.01597 1.44650 1.37038 0.85164 0.78700 0.78159 0.78294 1.18484 1.19903 1.20105 1.20055 0.95451 0.83353 0.96926 1.20472 0.98766 0.96138 0.95213 1.21152 0.97179 0.95963 0.99551 1.21364 0.99516 0.98744 0.94943 1.21447 0.98920 0.99435 0.94190 1.21420 0.97002 0.95148 1.00766 1.21124 1.00295 0.98785 0.93048 0.87253 0.91193 0.91127 0.82339 0.89579 0.89888 0.89993 0.83432 0.86570 0.91785 0.89371 0.94814 0.88305 0.84096 0.82637 0.83448 0.87066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 9.81 113.37 1.11 1.59 16 2 O -0.34 -13.77 9.63 -84.17 -0.81 -14.58 16 3 C 0.15 6.03 6.68 22.85 0.15 6.18 16 4 C -0.22 -6.76 8.67 22.34 0.19 -6.57 16 5 C -0.03 -0.98 5.88 -19.82 -0.12 -1.10 16 6 C -0.11 -1.89 10.00 71.24 0.71 -1.17 16 7 C -0.17 -5.70 9.67 22.24 0.22 -5.49 16 8 C -0.03 -1.30 8.28 22.53 0.19 -1.12 16 9 C -0.17 -8.11 5.01 -20.01 -0.10 -8.21 16 10 C 0.52 28.82 6.80 86.66 0.59 29.41 16 11 O -0.62 -37.35 15.99 1.39 0.02 -37.33 16 12 N -0.44 -23.82 2.44 -643.31 -1.57 -25.39 16 13 C -0.33 -17.43 6.64 84.09 0.56 -16.87 16 14 H 0.08 3.98 7.45 -2.91 -0.02 3.96 16 15 C 0.01 0.64 5.09 84.95 0.43 1.07 16 16 N -0.90 -48.11 11.67 21.68 0.25 -47.86 16 17 Si 0.97 39.69 29.57 68.60 2.03 41.72 16 18 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 19 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 20 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16 21 C 0.17 8.73 5.00 85.63 0.43 9.15 16 22 C -0.10 -4.84 5.42 -19.86 -0.11 -4.95 16 23 C -0.12 -5.16 9.60 22.27 0.21 -4.94 16 24 C -0.13 -4.33 10.05 22.27 0.22 -4.11 16 25 C -0.12 -3.59 10.05 22.27 0.22 -3.37 16 26 C -0.13 -4.06 10.05 22.27 0.22 -3.83 16 27 C -0.11 -4.65 9.73 22.27 0.22 -4.44 16 28 H 0.11 2.40 8.14 -2.38 -0.02 2.38 16 29 H 0.07 1.49 7.65 -2.39 -0.02 1.47 16 30 H 0.07 1.50 7.67 -2.39 -0.02 1.49 16 31 H 0.16 3.62 6.30 -2.91 -0.02 3.60 16 32 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.08 1.16 8.08 -2.39 -0.02 1.14 16 34 H 0.08 1.23 8.08 -2.38 -0.02 1.21 16 35 H 0.15 3.92 8.06 -2.91 -0.02 3.90 16 36 H 0.12 5.49 7.25 -2.91 -0.02 5.47 16 37 H 0.27 13.72 8.31 -92.70 -0.77 12.95 16 38 H 0.09 4.82 6.01 -2.39 -0.01 4.81 16 39 H 0.03 1.89 7.45 -2.39 -0.02 1.87 16 40 H 0.10 4.63 7.81 -2.92 -0.02 4.61 16 41 H 0.14 3.87 8.06 -2.91 -0.02 3.85 16 42 H 0.16 3.24 8.06 -2.91 -0.02 3.21 16 43 H 0.15 3.70 8.06 -2.91 -0.02 3.67 16 44 H 0.11 4.65 8.06 -2.91 -0.02 4.63 16 Total: -1.00 -73.10 371.67 6.29 -66.81 By element: Atomic # 1 Polarization: 34.39 SS G_CDS: 1.00 Total: 35.39 kcal Atomic # 6 Polarization: -24.12 SS G_CDS: 5.36 Total: -18.76 kcal Atomic # 7 Polarization: -71.93 SS G_CDS: -1.32 Total: -73.25 kcal Atomic # 8 Polarization: -51.12 SS G_CDS: -0.79 Total: -51.91 kcal Atomic # 14 Polarization: 39.69 SS G_CDS: 2.03 Total: 41.72 kcal Total: -73.10 6.29 -66.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148570531.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.948 kcal (2) G-P(sol) polarization free energy of solvation -73.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds