Wall clock time and date at job start Tue Mar 31 2020 13:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38109 * 119.99459 * 2 1 4 4 C 1.38826 * 119.98228 * 179.72363 * 3 2 1 5 5 N 1.40113 * 120.01418 * 180.28580 * 4 3 2 6 6 C 1.34770 * 120.00121 * 19.81371 * 5 4 3 7 7 O 1.21295 * 120.00158 * 5.54279 * 6 5 4 8 8 C 1.50701 * 119.99976 * 185.53831 * 6 5 4 9 9 C 1.50700 * 109.47134 * 180.02562 * 8 6 5 10 10 C 1.37643 * 120.12678 * 264.99968 * 9 8 6 11 11 C 1.38607 * 120.25117 * 179.97438 * 10 9 8 12 12 C 1.38664 * 120.49857 * 0.02562 * 11 10 9 13 13 C 1.37590 * 120.24936 * 0.02562 * 12 11 10 14 14 C 1.40697 * 120.13180 * 84.72329 * 9 8 6 15 15 C 1.41398 * 120.24251 * 359.97438 * 14 9 8 16 16 H 1.08007 * 119.99570 * 330.98584 * 15 14 9 17 17 C 1.39941 * 120.00111 * 150.98847 * 15 14 9 18 18 N 1.30825 * 119.99985 * 348.57517 * 17 15 14 19 19 Si 1.86804 * 119.99872 * 168.57111 * 17 15 14 20 20 H 1.48500 * 109.46911 * 90.00392 * 19 17 15 21 21 H 1.48501 * 109.47021 * 210.00138 * 19 17 15 22 22 H 1.48494 * 109.47170 * 329.99994 * 19 17 15 23 23 C 1.38873 * 119.97089 * 0.55758 * 4 3 2 24 24 C 1.50699 * 120.00670 * 179.72256 * 23 4 3 25 25 C 1.38067 * 119.98294 * 359.44367 * 23 4 3 26 26 C 1.38709 * 119.98910 * 179.97438 * 2 1 3 27 27 O 1.35967 * 119.98235 * 359.97438 * 26 2 1 28 28 H 1.08998 * 109.46731 * 270.01933 * 1 2 3 29 29 H 1.09000 * 109.46666 * 30.01467 * 1 2 3 30 30 H 1.08996 * 109.47358 * 150.01556 * 1 2 3 31 31 H 1.07996 * 120.00913 * 0.02562 * 3 2 1 32 32 H 0.97002 * 119.99441 * 199.82204 * 5 4 3 33 33 H 1.09004 * 109.47032 * 299.99880 * 8 6 5 34 34 H 1.09000 * 109.47336 * 60.00028 * 8 6 5 35 35 H 1.07999 * 119.87204 * 359.97438 * 10 9 8 36 36 H 1.07995 * 119.75152 * 179.97438 * 11 10 9 37 37 H 1.08002 * 119.87094 * 179.97438 * 12 11 10 38 38 H 1.08006 * 120.12914 * 179.97438 * 13 12 11 39 39 H 0.96998 * 119.99810 * 180.02562 * 18 17 15 40 40 H 1.08997 * 109.46952 * 269.72163 * 24 23 4 41 41 H 1.08995 * 109.47251 * 29.72307 * 24 23 4 42 42 H 1.09003 * 109.47204 * 149.72410 * 24 23 4 43 43 H 1.07997 * 119.98927 * 180.27840 * 25 23 4 44 44 H 0.96698 * 114.00030 * 269.97781 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1961 0.0000 4 6 3.5857 1.1958 0.0058 5 7 4.2868 2.4089 0.0119 6 6 3.6717 3.5408 0.4078 7 8 2.5446 3.4944 0.8537 8 6 4.3842 4.8641 0.2967 9 6 3.4853 5.9627 0.8028 10 6 2.7086 6.6806 -0.0781 11 6 1.8805 7.6912 0.3846 12 6 1.8246 7.9913 1.7372 13 6 2.5929 7.2875 2.6357 14 6 3.4323 6.2546 2.1781 15 6 4.2208 5.5196 3.0931 16 1 4.4862 4.4953 2.8760 17 6 4.6573 6.1191 4.2798 18 7 4.5323 7.4109 4.4446 19 14 5.4184 5.0747 5.6288 20 1 6.8867 4.9925 5.4222 21 1 5.1383 5.6919 6.9501 22 1 4.8353 3.7097 5.5865 23 6 4.2792 -0.0073 -0.0001 24 6 5.7862 -0.0085 -0.0001 25 6 3.5877 -1.2023 -0.0001 26 6 2.2003 -1.2014 0.0005 27 8 1.5199 -2.3786 0.0016 28 1 -0.3633 0.0003 1.0277 29 1 -0.3632 0.8899 -0.5141 30 1 -0.3634 -0.8901 -0.5136 31 1 1.6575 2.1314 0.0004 32 1 5.2149 2.4340 -0.2691 33 1 5.2958 4.8371 0.8937 34 1 4.6383 5.0535 -0.7462 35 1 2.7446 6.4556 -1.1338 36 1 1.2749 8.2497 -0.3137 37 1 1.1761 8.7811 2.0866 38 1 2.5482 7.5231 3.6888 39 1 4.8352 7.8264 5.2670 40 1 6.1495 -0.0088 -1.0278 41 1 6.1503 0.8811 0.5137 42 1 6.1489 -0.8989 0.5136 43 1 4.1270 -2.1380 -0.0002 44 1 1.3237 -2.7187 0.8853 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161245253.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:10 Heat of formation + Delta-G solvation = -60.840851 kcal Electronic energy + Delta-G solvation = -27010.829954 eV Core-core repulsion = 23277.668793 eV Total energy + Delta-G solvation = -3733.161161 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.80127 -40.36407 -39.22158 -37.83531 -35.48780 -35.46625 -34.25195 -33.49431 -31.34908 -30.25375 -30.12870 -28.27634 -26.87517 -25.76664 -24.15942 -22.81697 -22.34832 -21.69967 -21.00639 -19.11165 -18.89849 -18.40311 -17.86051 -17.23432 -16.72043 -16.41084 -16.22139 -16.11175 -15.50608 -15.32106 -14.97474 -14.61903 -14.55743 -14.37344 -14.27247 -14.02586 -13.81345 -13.55950 -13.37330 -13.17048 -12.90806 -12.88768 -12.77145 -12.69487 -12.67069 -12.49950 -12.45258 -12.13415 -11.46925 -11.33862 -11.25070 -11.21700 -11.05423 -10.55865 -9.59071 -9.20585 -9.16268 -8.78104 -8.56292 -6.31859 0.19076 0.35461 0.97862 1.12368 1.35497 1.46560 1.51783 1.69254 2.15752 2.19946 2.68422 2.80368 3.36438 3.66622 3.82948 3.88562 4.07088 4.15479 4.26394 4.38440 4.45864 4.46927 4.59165 4.63842 4.70159 4.72480 4.78424 4.82505 4.82846 4.94130 5.05220 5.08884 5.19769 5.21647 5.29425 5.36741 5.40505 5.47778 5.54102 5.59870 5.77535 5.98559 6.02940 6.16086 6.20775 6.41507 6.51870 6.73938 6.88800 6.99404 7.10510 7.25294 8.39587 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012066 B = 0.003849 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.057442 B = 7272.964891 C = 8290.369641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.110 4.110 3 C -0.150 4.150 4 C 0.135 3.865 5 N -0.662 5.662 6 C 0.515 3.485 7 O -0.542 6.542 8 C -0.068 4.068 9 C -0.185 4.185 10 C -0.092 4.092 11 C -0.238 4.238 12 C -0.119 4.119 13 C -0.188 4.188 14 C 0.098 3.902 15 C -0.483 4.483 16 H 0.070 0.930 17 C 0.036 3.964 18 N -0.832 5.832 19 Si 0.971 3.029 20 H -0.254 1.254 21 H -0.270 1.270 22 H -0.270 1.270 23 C -0.113 4.113 24 C -0.113 4.113 25 C -0.120 4.120 26 C 0.076 3.924 27 O -0.500 6.500 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.130 0.870 32 H 0.425 0.575 33 H 0.104 0.896 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.115 0.885 37 H 0.104 0.896 38 H 0.097 0.903 39 H 0.284 0.716 40 H 0.090 0.910 41 H 0.066 0.934 42 H 0.087 0.913 43 H 0.156 0.844 44 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.228 -15.725 -7.689 17.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.111 4.111 3 C -0.171 4.171 4 C 0.040 3.960 5 N -0.308 5.308 6 C 0.304 3.696 7 O -0.419 6.419 8 C -0.107 4.107 9 C -0.187 4.187 10 C -0.110 4.110 11 C -0.257 4.257 12 C -0.137 4.137 13 C -0.208 4.208 14 C 0.096 3.904 15 C -0.513 4.513 16 H 0.088 0.912 17 C -0.178 4.178 18 N -0.459 5.459 19 Si 0.792 3.208 20 H -0.178 1.178 21 H -0.194 1.194 22 H -0.194 1.194 23 C -0.115 4.115 24 C -0.169 4.169 25 C -0.139 4.139 26 C 0.031 3.969 27 O -0.312 6.312 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.102 0.898 31 H 0.148 0.852 32 H 0.264 0.736 33 H 0.122 0.878 34 H 0.137 0.863 35 H 0.135 0.865 36 H 0.133 0.867 37 H 0.123 0.877 38 H 0.115 0.885 39 H 0.095 0.905 40 H 0.109 0.891 41 H 0.085 0.915 42 H 0.106 0.894 43 H 0.173 0.827 44 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 2.549 -15.409 -7.819 17.466 hybrid contribution 0.269 0.167 1.352 1.388 sum 2.818 -15.241 -6.467 16.795 Atomic orbital electron populations 1.20655 0.89836 1.03097 1.02682 1.20323 0.97660 0.92100 1.01015 1.21431 0.93527 0.99078 1.03034 1.17939 0.91381 0.85906 1.00806 1.43627 1.16297 1.05382 1.65445 1.21455 0.86576 0.86219 0.75304 1.90601 1.20916 1.86881 1.43457 1.20310 0.98589 0.88152 1.03649 1.19518 1.04457 1.01759 0.92986 1.20747 0.96058 0.95898 0.98270 1.20736 1.06314 1.03593 0.95059 1.20967 0.99157 0.99305 0.94280 1.21341 0.99614 1.01187 0.98621 1.17716 0.89734 0.91209 0.91791 1.19590 1.29519 0.99074 1.03121 0.91232 1.26622 0.94858 0.95823 1.00506 1.69865 1.37649 1.11527 1.26823 0.85375 0.79423 0.78747 0.77235 1.17795 1.19443 1.19418 1.19763 0.97814 0.90233 1.03723 1.20811 0.88287 1.04013 1.03819 1.21296 0.92928 0.98410 1.01287 1.18255 0.90182 0.84785 1.03687 1.84756 1.76252 1.35207 1.34988 0.90871 0.92178 0.89834 0.85212 0.73584 0.87815 0.86304 0.86458 0.86695 0.87749 0.88501 0.90498 0.89113 0.91500 0.89402 0.82661 0.73832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.62 9.79 71.24 0.70 -1.93 16 2 C -0.11 -3.17 5.89 -19.78 -0.12 -3.28 16 3 C -0.15 -5.10 8.44 22.38 0.19 -4.91 16 4 C 0.14 4.04 6.48 38.11 0.25 4.29 16 5 N -0.66 -19.03 5.09 -303.39 -1.54 -20.58 16 6 C 0.51 19.29 7.27 87.66 0.64 19.93 16 7 O -0.54 -25.40 12.94 -3.08 -0.04 -25.44 16 8 C -0.07 -2.46 5.19 29.10 0.15 -2.31 16 9 C -0.19 -8.67 4.43 -19.40 -0.09 -8.75 16 10 C -0.09 -4.02 9.66 22.22 0.21 -3.81 16 11 C -0.24 -10.67 10.05 22.46 0.23 -10.44 16 12 C -0.12 -5.80 10.02 22.22 0.22 -5.58 16 13 C -0.19 -10.34 8.66 22.73 0.20 -10.14 16 14 C 0.10 5.27 5.55 -21.29 -0.12 5.15 16 15 C -0.48 -25.76 8.08 23.46 0.19 -25.58 16 16 H 0.07 3.61 6.75 -2.91 -0.02 3.59 16 17 C 0.04 1.80 5.24 85.26 0.45 2.25 16 18 N -0.83 -43.98 10.88 21.83 0.24 -43.75 16 19 Si 0.97 38.94 29.58 68.60 2.03 40.97 16 20 H -0.25 -9.44 7.11 99.48 0.71 -8.74 16 21 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 22 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 23 C -0.11 -2.62 5.89 -19.75 -0.12 -2.73 16 24 C -0.11 -1.75 9.46 71.24 0.67 -1.08 16 25 C -0.12 -2.63 9.63 22.35 0.22 -2.41 16 26 C 0.08 1.87 6.68 22.50 0.15 2.02 16 27 O -0.50 -9.87 12.54 -93.18 -1.17 -11.04 16 28 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.06 1.54 8.08 -2.39 -0.02 1.52 16 30 H 0.08 1.79 7.53 -2.39 -0.02 1.77 16 31 H 0.13 5.21 5.42 -2.91 -0.02 5.20 16 32 H 0.42 8.76 7.18 -92.71 -0.67 8.10 16 33 H 0.10 3.70 7.13 -2.38 -0.02 3.68 16 34 H 0.12 3.34 8.05 -2.39 -0.02 3.32 16 35 H 0.12 4.31 8.06 -2.91 -0.02 4.29 16 36 H 0.12 4.40 8.06 -2.91 -0.02 4.38 16 37 H 0.10 4.55 8.06 -2.91 -0.02 4.53 16 38 H 0.10 5.61 6.25 -2.91 -0.02 5.59 16 39 H 0.28 13.71 8.30 -92.71 -0.77 12.94 16 40 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.07 1.05 6.86 -2.39 -0.02 1.04 16 42 H 0.09 1.08 8.09 -2.39 -0.02 1.06 16 43 H 0.16 2.47 8.06 -2.91 -0.02 2.45 16 44 H 0.40 4.35 9.06 -74.06 -0.67 3.68 16 Total: -1.00 -71.29 365.97 3.25 -68.04 By element: Atomic # 1 Polarization: 41.37 SS G_CDS: -0.28 Total: 41.09 kcal Atomic # 6 Polarization: -53.33 SS G_CDS: 4.02 Total: -49.31 kcal Atomic # 7 Polarization: -63.02 SS G_CDS: -1.31 Total: -64.32 kcal Atomic # 8 Polarization: -35.26 SS G_CDS: -1.21 Total: -36.47 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 2.03 Total: 40.97 kcal Total: -71.29 3.25 -68.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161245253.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.197 kcal (2) G-P(sol) polarization free energy of solvation -71.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds