Wall clock time and date at job start Tue Mar 31 2020 13:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38213 * 119.93410 * 2 1 4 4 C 1.38766 * 120.08440 * 179.97438 * 3 2 1 5 5 O 1.35896 * 120.02333 * 179.97438 * 4 3 2 6 6 C 1.38629 * 119.95615 * 0.02562 * 4 3 2 7 7 C 1.38763 * 119.87849 * 359.97438 * 6 4 3 8 8 N 1.39915 * 120.04281 * 180.02562 * 7 6 4 9 9 C 1.34776 * 119.99971 * 326.89640 * 8 7 6 10 10 O 1.21285 * 120.00412 * 354.84601 * 9 8 7 11 11 C 1.50709 * 119.99695 * 174.84551 * 9 8 7 12 12 C 1.53000 * 109.46823 * 179.97438 * 11 9 8 13 13 H 1.09004 * 109.47564 * 55.00115 * 12 11 9 14 14 C 1.50702 * 109.47306 * 294.99811 * 12 11 9 15 15 H 1.07995 * 120.00240 * 329.01199 * 14 12 11 16 16 C 1.37880 * 119.99638 * 149.00375 * 14 12 11 17 17 N 1.31511 * 120.00343 * 5.37186 * 16 14 12 18 18 Si 1.86809 * 119.99620 * 185.36207 * 16 14 12 19 19 H 1.48499 * 109.46863 * 60.00971 * 18 16 14 20 20 H 1.48499 * 109.47011 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47228 * 300.00393 * 18 16 14 22 22 C 1.50699 * 109.46898 * 174.99873 * 12 11 9 23 23 C 1.38241 * 119.99927 * 63.19911 * 22 12 11 24 24 C 1.38231 * 119.99652 * 179.78707 * 23 22 12 25 25 C 1.38230 * 120.00254 * 0.43742 * 24 23 22 26 26 C 1.38237 * 120.00241 * 359.81483 * 25 24 23 27 27 C 1.38232 * 119.99602 * 359.97438 * 26 25 24 28 28 C 1.38117 * 119.93794 * 180.25161 * 2 1 3 29 29 H 1.08995 * 109.46926 * 90.00462 * 1 2 3 30 30 H 1.08998 * 109.47110 * 210.00404 * 1 2 3 31 31 H 1.09002 * 109.47458 * 330.00046 * 1 2 3 32 32 H 1.08000 * 119.96039 * 359.97438 * 3 2 1 33 33 H 0.96692 * 114.00565 * 270.02901 * 5 4 3 34 34 H 1.08000 * 120.06032 * 180.02562 * 6 4 3 35 35 H 0.96996 * 120.00090 * 146.89430 * 8 7 6 36 36 H 1.08994 * 109.46828 * 299.99802 * 11 9 8 37 37 H 1.08994 * 109.46856 * 60.00213 * 11 9 8 38 38 H 0.97003 * 120.00097 * 179.97438 * 17 16 14 39 39 H 1.08003 * 119.99802 * 359.97438 * 23 22 12 40 40 H 1.08003 * 119.99516 * 180.27570 * 24 23 22 41 41 H 1.07999 * 119.99996 * 179.83068 * 25 24 23 42 42 H 1.07994 * 119.99970 * 179.97438 * 26 25 24 43 43 H 1.08004 * 119.99774 * 180.02562 * 27 26 25 44 44 H 1.08003 * 119.98501 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1967 1.1978 0.0000 4 6 3.5844 1.2014 0.0005 5 8 4.2613 2.3798 0.0000 6 6 4.2798 0.0021 0.0005 7 6 3.5856 -1.1994 0.0005 8 7 4.2840 -2.4118 0.0011 9 6 5.4678 -2.5079 -0.6359 10 8 5.8835 -1.5732 -1.2875 11 6 6.2751 -3.7768 -0.5385 12 6 7.5649 -3.6239 -1.3471 13 1 8.1036 -2.7390 -1.0082 14 6 7.2273 -3.4774 -2.8085 15 1 6.3492 -3.9603 -3.2109 16 6 8.0396 -2.7267 -3.6317 17 7 9.1637 -2.2263 -3.1676 18 14 7.5433 -2.4206 -5.4065 19 1 6.2411 -1.7075 -5.4403 20 1 8.5791 -1.5922 -6.0743 21 1 7.4154 -3.7190 -6.1157 22 6 8.4283 -4.8434 -1.1508 23 6 7.9810 -6.0820 -1.5714 24 6 8.7748 -7.1998 -1.3953 25 6 10.0121 -7.0806 -0.7905 26 6 10.4572 -5.8429 -0.3652 27 6 9.6652 -4.7244 -0.5452 28 6 2.1963 -1.1969 -0.0053 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.6550 2.1321 -0.0004 33 1 4.4571 2.7205 -0.8834 34 1 5.3598 0.0030 0.0014 35 1 3.9161 -3.1832 0.4599 36 1 6.5211 -3.9716 0.5053 37 1 5.6938 -4.6086 -0.9362 38 1 9.7353 -1.6984 -3.7469 39 1 7.0125 -6.1757 -2.0403 40 1 8.4272 -8.1668 -1.7279 41 1 10.6311 -7.9544 -0.6504 42 1 11.4237 -5.7499 0.1077 43 1 10.0132 -3.7573 -0.2133 44 1 1.6551 -2.1315 -0.0098 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170122763.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:13 Heat of formation + Delta-G solvation = -35.239094 kcal Electronic energy + Delta-G solvation = -26670.512006 eV Core-core repulsion = 22938.461020 eV Total energy + Delta-G solvation = -3732.050985 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.29782 -38.90186 -38.21046 -36.79425 -34.63010 -33.91052 -31.77611 -31.33097 -30.01801 -29.53926 -28.47273 -26.91917 -25.63504 -23.19028 -22.18579 -21.86812 -21.53109 -19.92827 -19.31604 -18.13025 -16.86839 -16.43474 -16.25054 -16.03122 -15.84840 -15.39172 -14.65545 -14.43183 -14.30306 -14.13110 -13.84897 -13.65276 -13.25591 -13.02925 -12.68030 -12.62356 -12.43120 -12.18946 -11.99631 -11.85640 -11.69031 -11.63962 -11.58857 -10.89408 -10.78012 -10.62917 -10.58591 -10.27787 -10.08046 -9.86864 -9.50930 -9.18029 -8.98937 -8.46135 -8.37413 -8.05099 -7.88363 -7.62574 -5.96942 -3.97367 1.31960 1.42992 2.28228 2.33575 3.23794 3.36465 3.39982 3.41700 3.44417 3.83240 4.33090 4.49020 4.73794 4.81409 5.11634 5.21987 5.28383 5.33283 5.47826 5.49756 5.56409 5.65726 5.71510 5.73892 5.81192 5.82714 5.99915 6.02156 6.08464 6.25347 6.39827 6.41101 6.48791 6.52722 6.56906 6.62750 6.75401 6.88934 7.02359 7.12811 7.30456 7.40868 7.49773 7.75791 7.81099 7.84064 7.93014 8.02622 8.33094 8.81840 9.01742 9.65026 11.12811 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013013 B = 0.003496 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.205478 B = 8007.831572 C = 8926.359885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.056 4.056 3 C -0.173 4.173 4 C 0.128 3.872 5 O -0.501 6.501 6 C -0.155 4.155 7 C 0.187 3.813 8 N -0.692 5.692 9 C 0.510 3.490 10 O -0.472 6.472 11 C -0.122 4.122 12 C 0.081 3.919 13 H 0.070 0.930 14 C -0.495 4.495 15 H 0.050 0.950 16 C 0.079 3.921 17 N -0.880 5.880 18 Si 0.886 3.114 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.279 1.279 22 C -0.020 4.020 23 C -0.115 4.115 24 C -0.132 4.132 25 C -0.155 4.155 26 C -0.128 4.128 27 C -0.117 4.117 28 C -0.166 4.166 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.124 0.876 33 H 0.392 0.608 34 H 0.144 0.856 35 H 0.406 0.594 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.260 0.740 39 H 0.113 0.887 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.114 0.886 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.011 -0.565 8.267 14.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.057 4.057 3 C -0.193 4.193 4 C 0.083 3.917 5 O -0.311 6.311 6 C -0.176 4.176 7 C 0.091 3.909 8 N -0.339 5.339 9 C 0.298 3.702 10 O -0.340 6.340 11 C -0.162 4.162 12 C 0.062 3.938 13 H 0.088 0.912 14 C -0.532 4.532 15 H 0.068 0.932 16 C -0.125 4.125 17 N -0.517 5.517 18 Si 0.714 3.286 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.205 1.205 22 C -0.021 4.021 23 C -0.134 4.134 24 C -0.150 4.150 25 C -0.173 4.173 26 C -0.146 4.146 27 C -0.135 4.135 28 C -0.187 4.187 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.142 0.858 33 H 0.248 0.752 34 H 0.161 0.839 35 H 0.241 0.759 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.070 0.930 39 H 0.131 0.869 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.132 0.868 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.456 0.137 8.310 14.153 hybrid contribution -0.202 -0.187 -1.538 1.563 sum -11.657 -0.050 6.771 13.481 Atomic orbital electron populations 1.20761 0.90940 1.02664 1.02367 1.19453 0.95769 0.92089 0.98356 1.21140 0.93292 0.98079 1.06753 1.18234 0.89564 0.84980 0.98951 1.84753 1.76765 1.35813 1.33771 1.21469 1.01988 0.90482 1.03693 1.17563 0.90494 0.86192 0.96675 1.44017 1.22728 1.11446 1.55696 1.21207 0.79910 0.91291 0.77755 1.90771 1.68023 1.39375 1.35860 1.21830 0.99289 0.93855 1.01221 1.17819 0.88297 0.92306 0.95339 0.91151 1.20640 1.09329 1.31063 0.92204 0.93169 1.24802 0.94645 0.94938 0.98079 1.69900 1.11218 1.34577 1.36017 0.86767 0.78372 0.78144 0.85338 1.20304 1.21384 1.20476 1.20679 0.95115 0.95540 0.90777 1.20939 0.99936 0.92339 1.00141 1.20968 0.95192 0.98057 1.00800 1.20797 0.96905 0.96905 1.02712 1.20985 0.99081 0.93255 1.01313 1.21078 0.94950 0.97658 0.99795 1.20754 0.92151 0.98217 1.07555 0.91112 0.91494 0.91557 0.85841 0.75169 0.83878 0.75937 0.91060 0.90094 0.93021 0.86928 0.87679 0.87812 0.87639 0.86842 0.85745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 10.01 36.01 0.36 -0.57 16 2 C -0.06 -0.67 5.87 -104.67 -0.61 -1.28 16 3 C -0.17 -2.23 9.63 -39.40 -0.38 -2.61 16 4 C 0.13 1.93 6.70 -39.24 -0.26 1.67 16 5 O -0.50 -7.02 13.50 -19.41 -0.26 -7.28 16 6 C -0.16 -2.66 8.59 -39.24 -0.34 -3.00 16 7 C 0.19 2.89 6.28 -83.72 -0.53 2.36 16 8 N -0.69 -10.33 5.34 -9.87 -0.05 -10.38 16 9 C 0.51 9.78 7.32 -10.98 -0.08 9.70 16 10 O -0.47 -11.26 12.65 5.55 0.07 -11.19 16 11 C -0.12 -2.23 4.95 -27.88 -0.14 -2.37 16 12 C 0.08 1.88 1.63 -92.92 -0.15 1.73 16 13 H 0.07 1.87 7.06 -51.93 -0.37 1.51 16 14 C -0.49 -12.99 6.38 -34.44 -0.22 -13.21 16 15 H 0.05 1.31 7.82 -52.49 -0.41 0.90 16 16 C 0.08 2.19 5.45 -17.82 -0.10 2.10 16 17 N -0.88 -25.46 12.91 55.43 0.72 -24.75 16 18 Si 0.89 22.05 29.54 -169.99 -5.02 17.02 16 19 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 C -0.02 -0.44 4.77 -104.62 -0.50 -0.94 16 23 C -0.12 -2.28 8.86 -39.58 -0.35 -2.64 16 24 C -0.13 -2.34 10.05 -39.59 -0.40 -2.73 16 25 C -0.15 -2.67 10.05 -39.58 -0.40 -3.07 16 26 C -0.13 -2.35 10.05 -39.58 -0.40 -2.74 16 27 C -0.12 -2.43 9.67 -39.58 -0.38 -2.82 16 28 C -0.17 -2.12 9.61 -39.37 -0.38 -2.50 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 31 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 32 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 33 H 0.39 3.88 9.06 45.56 0.41 4.30 16 34 H 0.14 2.81 6.39 -52.49 -0.34 2.48 16 35 H 0.41 4.47 8.82 -40.82 -0.36 4.11 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.08 1.35 7.76 -51.93 -0.40 0.94 16 38 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.11 2.13 7.75 -52.48 -0.41 1.73 16 40 H 0.11 1.57 8.06 -52.48 -0.42 1.14 16 41 H 0.10 1.49 8.06 -52.49 -0.42 1.07 16 42 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 43 H 0.11 2.39 7.95 -52.48 -0.42 1.98 16 44 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 LS Contribution 374.80 15.07 5.65 5.65 Total: -1.00 -33.13 374.80 -9.37 -42.51 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -5.22 Total: 11.35 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: -5.25 Total: -22.92 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: 0.66 Total: -35.13 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.19 Total: -18.48 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.13 -9.37 -42.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170122763.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.270 kcal (2) G-P(sol) polarization free energy of solvation -33.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds