Wall clock time and date at job start Tue Mar 31 2020 13:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38213 * 119.93410 * 2 1 4 4 C 1.38766 * 120.08440 * 179.97438 * 3 2 1 5 5 O 1.35896 * 120.02333 * 179.97438 * 4 3 2 6 6 C 1.38629 * 119.95615 * 0.02562 * 4 3 2 7 7 C 1.38763 * 119.87849 * 359.97438 * 6 4 3 8 8 N 1.39915 * 120.04281 * 180.02562 * 7 6 4 9 9 C 1.34776 * 119.99971 * 326.89640 * 8 7 6 10 10 O 1.21285 * 120.00412 * 354.84601 * 9 8 7 11 11 C 1.50709 * 119.99695 * 174.84551 * 9 8 7 12 12 C 1.53000 * 109.46823 * 179.97438 * 11 9 8 13 13 H 1.09004 * 109.47564 * 55.00115 * 12 11 9 14 14 C 1.50702 * 109.47306 * 294.99811 * 12 11 9 15 15 H 1.07995 * 120.00240 * 329.01199 * 14 12 11 16 16 C 1.37880 * 119.99638 * 149.00375 * 14 12 11 17 17 N 1.31511 * 120.00343 * 5.37186 * 16 14 12 18 18 Si 1.86809 * 119.99620 * 185.36207 * 16 14 12 19 19 H 1.48499 * 109.46863 * 60.00971 * 18 16 14 20 20 H 1.48499 * 109.47011 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47228 * 300.00393 * 18 16 14 22 22 C 1.50699 * 109.46898 * 174.99873 * 12 11 9 23 23 C 1.38241 * 119.99927 * 63.19911 * 22 12 11 24 24 C 1.38231 * 119.99652 * 179.78707 * 23 22 12 25 25 C 1.38230 * 120.00254 * 0.43742 * 24 23 22 26 26 C 1.38237 * 120.00241 * 359.81483 * 25 24 23 27 27 C 1.38232 * 119.99602 * 359.97438 * 26 25 24 28 28 C 1.38117 * 119.93794 * 180.25161 * 2 1 3 29 29 H 1.08995 * 109.46926 * 90.00462 * 1 2 3 30 30 H 1.08998 * 109.47110 * 210.00404 * 1 2 3 31 31 H 1.09002 * 109.47458 * 330.00046 * 1 2 3 32 32 H 1.08000 * 119.96039 * 359.97438 * 3 2 1 33 33 H 0.96692 * 114.00565 * 270.02901 * 5 4 3 34 34 H 1.08000 * 120.06032 * 180.02562 * 6 4 3 35 35 H 0.96996 * 120.00090 * 146.89430 * 8 7 6 36 36 H 1.08994 * 109.46828 * 299.99802 * 11 9 8 37 37 H 1.08994 * 109.46856 * 60.00213 * 11 9 8 38 38 H 0.97003 * 120.00097 * 179.97438 * 17 16 14 39 39 H 1.08003 * 119.99802 * 359.97438 * 23 22 12 40 40 H 1.08003 * 119.99516 * 180.27570 * 24 23 22 41 41 H 1.07999 * 119.99996 * 179.83068 * 25 24 23 42 42 H 1.07994 * 119.99970 * 179.97438 * 26 25 24 43 43 H 1.08004 * 119.99774 * 180.02562 * 27 26 25 44 44 H 1.08003 * 119.98501 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1967 1.1978 0.0000 4 6 3.5844 1.2014 0.0005 5 8 4.2613 2.3798 0.0000 6 6 4.2798 0.0021 0.0005 7 6 3.5856 -1.1994 0.0005 8 7 4.2840 -2.4118 0.0011 9 6 5.4678 -2.5079 -0.6359 10 8 5.8835 -1.5732 -1.2875 11 6 6.2751 -3.7768 -0.5385 12 6 7.5649 -3.6239 -1.3471 13 1 8.1036 -2.7390 -1.0082 14 6 7.2273 -3.4774 -2.8085 15 1 6.3492 -3.9603 -3.2109 16 6 8.0396 -2.7267 -3.6317 17 7 9.1637 -2.2263 -3.1676 18 14 7.5433 -2.4206 -5.4065 19 1 6.2411 -1.7075 -5.4403 20 1 8.5791 -1.5922 -6.0743 21 1 7.4154 -3.7190 -6.1157 22 6 8.4283 -4.8434 -1.1508 23 6 7.9810 -6.0820 -1.5714 24 6 8.7748 -7.1998 -1.3953 25 6 10.0121 -7.0806 -0.7905 26 6 10.4572 -5.8429 -0.3652 27 6 9.6652 -4.7244 -0.5452 28 6 2.1963 -1.1969 -0.0053 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.6550 2.1321 -0.0004 33 1 4.4571 2.7205 -0.8834 34 1 5.3598 0.0030 0.0014 35 1 3.9161 -3.1832 0.4599 36 1 6.5211 -3.9716 0.5053 37 1 5.6938 -4.6086 -0.9362 38 1 9.7353 -1.6984 -3.7469 39 1 7.0125 -6.1757 -2.0403 40 1 8.4272 -8.1668 -1.7279 41 1 10.6311 -7.9544 -0.6504 42 1 11.4237 -5.7499 0.1077 43 1 10.0132 -3.7573 -0.2133 44 1 1.6551 -2.1315 -0.0098 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170122763.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:12 Heat of formation + Delta-G solvation = -56.320899 kcal Electronic energy + Delta-G solvation = -26671.426181 eV Core-core repulsion = 22938.461020 eV Total energy + Delta-G solvation = -3732.965161 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.57309 -40.26325 -39.65235 -37.93905 -36.04942 -35.53165 -33.49988 -32.61215 -31.49425 -30.82493 -29.81949 -27.83042 -27.47972 -24.83307 -23.36031 -23.19685 -22.91096 -21.36438 -20.83367 -19.29468 -18.52771 -18.10208 -17.48876 -17.21223 -17.16362 -16.67435 -16.47864 -15.85890 -15.71764 -15.59810 -15.34624 -14.79196 -14.46195 -14.32936 -14.05752 -13.99393 -13.65700 -13.59306 -13.47631 -13.20232 -13.01951 -12.84130 -12.77472 -12.58700 -12.53874 -12.50142 -11.83795 -11.72425 -11.68863 -11.35217 -11.12004 -10.97515 -10.66234 -10.38337 -9.54308 -9.53282 -9.18967 -9.07425 -8.05803 -6.08723 0.22337 0.31051 0.78795 0.84748 1.33914 1.38183 1.42292 1.82101 2.15450 2.44251 2.70447 3.18599 3.26635 3.35266 3.87177 4.03368 4.19131 4.22939 4.25132 4.35956 4.39162 4.44255 4.46246 4.54387 4.59998 4.72041 4.76076 4.90023 4.91419 4.93372 4.98604 5.16757 5.21959 5.31218 5.38081 5.42894 5.50386 5.52545 5.58491 5.62534 5.77196 5.84576 5.95413 5.98254 6.16487 6.40067 6.46737 6.60189 6.76224 6.98482 7.40928 7.54509 9.03319 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013013 B = 0.003496 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.205478 B = 8007.831572 C = 8926.359885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.050 4.050 3 C -0.170 4.170 4 C 0.114 3.886 5 O -0.512 6.512 6 C -0.190 4.190 7 C 0.165 3.835 8 N -0.672 5.672 9 C 0.509 3.491 10 O -0.530 6.530 11 C -0.114 4.114 12 C 0.084 3.916 13 H 0.021 0.979 14 C -0.485 4.485 15 H 0.049 0.951 16 C 0.024 3.976 17 N -0.916 5.916 18 Si 0.933 3.067 19 H -0.284 1.284 20 H -0.290 1.290 21 H -0.265 1.265 22 C -0.043 4.043 23 C -0.127 4.127 24 C -0.127 4.127 25 C -0.148 4.148 26 C -0.130 4.130 27 C -0.142 4.142 28 C -0.159 4.159 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.148 0.852 33 H 0.406 0.594 34 H 0.102 0.898 35 H 0.426 0.574 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.253 0.747 39 H 0.118 0.882 40 H 0.141 0.859 41 H 0.143 0.857 42 H 0.130 0.870 43 H 0.091 0.909 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.764 -3.232 8.708 17.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.050 4.050 3 C -0.189 4.189 4 C 0.069 3.931 5 O -0.325 6.325 6 C -0.211 4.211 7 C 0.070 3.930 8 N -0.320 5.320 9 C 0.298 3.702 10 O -0.404 6.404 11 C -0.154 4.154 12 C 0.064 3.936 13 H 0.039 0.961 14 C -0.523 4.523 15 H 0.067 0.933 16 C -0.175 4.175 17 N -0.556 5.556 18 Si 0.760 3.240 19 H -0.211 1.211 20 H -0.216 1.216 21 H -0.190 1.190 22 C -0.044 4.044 23 C -0.145 4.145 24 C -0.144 4.144 25 C -0.166 4.166 26 C -0.148 4.148 27 C -0.161 4.161 28 C -0.179 4.179 29 H 0.100 0.900 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.166 0.834 33 H 0.265 0.735 34 H 0.121 0.879 35 H 0.265 0.735 36 H 0.116 0.884 37 H 0.124 0.876 38 H 0.062 0.938 39 H 0.136 0.864 40 H 0.159 0.841 41 H 0.160 0.840 42 H 0.148 0.852 43 H 0.110 0.890 44 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -14.259 -2.563 8.773 16.937 hybrid contribution 0.590 0.633 -1.568 1.791 sum -13.669 -1.930 7.206 15.572 Atomic orbital electron populations 1.20853 0.87713 1.04375 1.03531 1.19968 0.97938 0.91182 0.95962 1.21436 0.92116 0.99805 1.05568 1.18428 0.90711 0.84458 0.99466 1.84698 1.77022 1.35527 1.35260 1.21369 1.00341 0.92620 1.06779 1.17770 0.91756 0.85438 0.98013 1.43651 1.21392 1.12290 1.54685 1.21359 0.80813 0.90717 0.77277 1.90762 1.69628 1.41141 1.38841 1.21711 0.97332 0.94246 1.02131 1.17602 0.90257 0.91462 0.94230 0.96109 1.20954 1.08177 1.29439 0.93734 0.93327 1.25469 0.95032 0.95746 1.01261 1.70047 1.12457 1.36316 1.36750 0.86010 0.77402 0.78329 0.82249 1.21063 1.21572 1.19024 1.20508 0.95305 0.95724 0.92853 1.21053 1.00774 0.92219 1.00422 1.21373 0.94855 0.98749 0.99462 1.21257 0.96995 0.97494 1.00820 1.21274 0.99659 0.92918 1.00907 1.21086 0.95630 0.97977 1.01393 1.21093 0.90706 1.00124 1.05997 0.90001 0.89680 0.90096 0.83447 0.73504 0.87935 0.73487 0.88444 0.87643 0.93795 0.86366 0.84099 0.83955 0.85225 0.89031 0.82572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 10.01 71.24 0.71 -0.64 16 2 C -0.05 -1.05 5.87 -19.90 -0.12 -1.16 16 3 C -0.17 -4.13 9.63 22.39 0.22 -3.92 16 4 C 0.11 3.56 6.70 22.49 0.15 3.71 16 5 O -0.51 -15.09 13.50 -92.38 -1.25 -16.34 16 6 C -0.19 -6.94 8.59 22.49 0.19 -6.74 16 7 C 0.17 5.16 6.28 38.14 0.24 5.40 16 8 N -0.67 -20.08 5.34 -303.54 -1.62 -21.70 16 9 C 0.51 20.34 7.32 87.66 0.64 20.98 16 10 O -0.53 -27.29 12.65 -3.04 -0.04 -27.32 16 11 C -0.11 -4.25 4.95 29.85 0.15 -4.10 16 12 C 0.08 4.06 1.63 -12.29 -0.02 4.04 16 13 H 0.02 1.20 7.06 -2.39 -0.02 1.18 16 14 C -0.49 -26.36 6.38 25.60 0.16 -26.19 16 15 H 0.05 2.59 7.82 -2.91 -0.02 2.56 16 16 C 0.02 1.37 5.45 84.66 0.46 1.84 16 17 N -0.92 -56.24 12.91 21.45 0.28 -55.97 16 18 Si 0.93 46.68 29.54 68.60 2.03 48.71 16 19 H -0.28 -14.40 7.11 99.48 0.71 -13.69 16 20 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 21 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 22 C -0.04 -1.91 4.77 -19.86 -0.09 -2.00 16 23 C -0.13 -4.83 8.86 22.27 0.20 -4.64 16 24 C -0.13 -4.05 10.05 22.27 0.22 -3.82 16 25 C -0.15 -4.57 10.05 22.27 0.22 -4.35 16 26 C -0.13 -4.57 10.05 22.27 0.22 -4.34 16 27 C -0.14 -6.13 9.67 22.27 0.22 -5.91 16 28 C -0.16 -3.71 9.61 22.41 0.22 -3.49 16 29 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.08 0.81 8.09 -2.39 -0.02 0.79 16 31 H 0.08 0.82 8.08 -2.39 -0.02 0.80 16 32 H 0.15 2.82 8.06 -2.91 -0.02 2.79 16 33 H 0.41 8.69 9.06 -74.06 -0.67 8.02 16 34 H 0.10 4.54 6.39 -2.91 -0.02 4.52 16 35 H 0.43 8.72 8.82 -92.71 -0.82 7.90 16 36 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 37 H 0.11 3.38 7.76 -2.39 -0.02 3.36 16 38 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 39 H 0.12 4.28 7.75 -2.91 -0.02 4.26 16 40 H 0.14 3.49 8.06 -2.91 -0.02 3.47 16 41 H 0.14 3.34 8.06 -2.91 -0.02 3.31 16 42 H 0.13 3.83 8.06 -2.91 -0.02 3.81 16 43 H 0.09 4.20 7.95 -2.91 -0.02 4.18 16 44 H 0.16 2.59 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -78.30 374.80 2.93 -75.36 By element: Atomic # 1 Polarization: 33.08 SS G_CDS: -0.46 Total: 32.62 kcal Atomic # 6 Polarization: -39.35 SS G_CDS: 3.99 Total: -35.36 kcal Atomic # 7 Polarization: -76.32 SS G_CDS: -1.34 Total: -77.67 kcal Atomic # 8 Polarization: -42.38 SS G_CDS: -1.29 Total: -43.66 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -78.30 2.93 -75.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170122763.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.042 kcal (2) G-P(sol) polarization free energy of solvation -78.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds