Wall clock time and date at job start Tue Mar 31 2020 13:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38214 * 119.93595 * 2 1 4 4 C 1.38767 * 120.08299 * 179.97438 * 3 2 1 5 5 O 1.35897 * 120.02031 * 179.97438 * 4 3 2 6 6 C 1.38629 * 119.95821 * 0.02562 * 4 3 2 7 7 C 1.38754 * 119.87793 * 0.02562 * 6 4 3 8 8 N 1.39917 * 120.04433 * 180.02562 * 7 6 4 9 9 C 1.34779 * 120.00014 * 34.73057 * 8 7 6 10 10 O 1.21292 * 119.99741 * 5.42082 * 9 8 7 11 11 C 1.50699 * 120.00055 * 185.42014 * 9 8 7 12 12 C 1.53004 * 109.47098 * 179.97438 * 11 9 8 13 13 H 1.08996 * 109.47312 * 305.00273 * 12 11 9 14 14 C 1.50703 * 109.46710 * 64.99854 * 12 11 9 15 15 H 1.07999 * 119.99837 * 34.91651 * 14 12 11 16 16 C 1.37881 * 120.00140 * 214.90509 * 14 12 11 17 17 N 1.31506 * 120.00331 * 184.86339 * 16 14 12 18 18 Si 1.86799 * 119.99678 * 5.14397 * 16 14 12 19 19 H 1.48501 * 109.47457 * 264.97049 * 18 16 14 20 20 H 1.48503 * 109.47301 * 24.96870 * 18 16 14 21 21 H 1.48499 * 109.47311 * 144.96819 * 18 16 14 22 22 C 1.50693 * 109.46965 * 184.99936 * 12 11 9 23 23 C 1.38239 * 120.00182 * 294.75727 * 22 12 11 24 24 C 1.38232 * 120.00031 * 179.79383 * 23 22 12 25 25 C 1.38234 * 120.00075 * 0.43258 * 24 23 22 26 26 C 1.38238 * 120.00021 * 359.82056 * 25 24 23 27 27 C 1.38234 * 119.99969 * 359.97430 * 26 25 24 28 28 C 1.38129 * 119.93711 * 180.25694 * 2 1 3 29 29 H 1.08994 * 109.47268 * 89.99853 * 1 2 3 30 30 H 1.09005 * 109.46846 * 210.00023 * 1 2 3 31 31 H 1.09001 * 109.47306 * 329.99369 * 1 2 3 32 32 H 1.08000 * 119.95602 * 0.02562 * 3 2 1 33 33 H 0.96696 * 114.00218 * 270.02321 * 5 4 3 34 34 H 1.08006 * 120.05672 * 180.02562 * 6 4 3 35 35 H 0.96993 * 120.00342 * 214.73638 * 8 7 6 36 36 H 1.09004 * 109.47043 * 60.00139 * 11 9 8 37 37 H 1.09001 * 109.46977 * 300.00204 * 11 9 8 38 38 H 0.97000 * 120.00376 * 180.27560 * 17 16 14 39 39 H 1.07999 * 119.99692 * 359.97438 * 23 22 12 40 40 H 1.08004 * 120.00403 * 180.27346 * 24 23 22 41 41 H 1.08001 * 120.00409 * 179.83630 * 25 24 23 42 42 H 1.08001 * 120.00597 * 179.97438 * 26 25 24 43 43 H 1.07997 * 120.00496 * 180.02562 * 27 26 25 44 44 H 1.07998 * 119.97751 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1967 1.1977 0.0000 4 6 3.5844 1.2013 0.0005 5 8 4.2613 2.3797 0.0000 6 6 4.2798 0.0020 0.0005 7 6 3.5856 -1.1994 -0.0005 8 7 4.2839 -2.4119 0.0000 9 6 5.4507 -2.5173 0.6663 10 8 5.8467 -1.5937 1.3456 11 6 6.2634 -3.7825 0.5673 12 6 7.5316 -3.6414 1.4115 13 1 8.0766 -2.7496 1.1023 14 6 7.1560 -3.5215 2.8661 15 1 6.3052 -4.0643 3.2506 16 6 7.8987 -2.7190 3.7060 17 7 7.6307 -2.6882 4.9931 18 14 9.2806 -1.6695 3.0144 19 1 10.5690 -2.3955 3.1497 20 1 9.0189 -1.3891 1.5798 21 1 9.3527 -0.3895 3.7638 22 6 8.4028 -4.8554 1.2160 23 6 7.9653 -6.0959 1.6414 24 6 8.7626 -7.2101 1.4582 25 6 10.0011 -7.0826 0.8577 26 6 10.4409 -5.8414 0.4371 27 6 9.6418 -4.7278 0.6164 28 6 2.1963 -1.1970 -0.0054 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8899 0.5139 32 1 1.6550 2.1320 0.0004 33 1 4.4572 2.7204 -0.8835 34 1 5.3598 0.0029 0.0014 35 1 3.9284 -3.1766 -0.4792 36 1 6.5375 -3.9578 -0.4730 37 1 5.6738 -4.6226 0.9343 38 1 8.1505 -2.1206 5.5834 39 1 6.9994 -6.1948 2.1142 40 1 8.4190 -8.1800 1.7866 41 1 10.6252 -7.9528 0.7170 42 1 11.4087 -5.7416 -0.0317 43 1 9.9850 -3.7581 0.2874 44 1 1.6550 -2.1314 -0.0100 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170122765.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:16 Heat of formation + Delta-G solvation = -30.886937 kcal Electronic energy + Delta-G solvation = -26747.868265 eV Core-core repulsion = 23016.006003 eV Total energy + Delta-G solvation = -3731.862262 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.33852 -39.02798 -38.39017 -36.85236 -34.70888 -33.99081 -31.84070 -31.49578 -30.23968 -29.63159 -28.62047 -26.94548 -25.97731 -23.03524 -22.23208 -22.02279 -21.70061 -19.96914 -19.28755 -18.18125 -17.01356 -16.80016 -16.36827 -16.07490 -15.93443 -15.49914 -14.69136 -14.63963 -14.40853 -14.10511 -13.85586 -13.65810 -13.29828 -13.03405 -12.76156 -12.65637 -12.60686 -12.46515 -12.26620 -11.94871 -11.88471 -11.80731 -11.47069 -11.23924 -10.85687 -10.62981 -10.52055 -10.41399 -9.95532 -9.92248 -9.58526 -9.14350 -9.02027 -8.49140 -8.45558 -8.25812 -7.91233 -7.86477 -6.00003 -3.97694 1.29883 1.40218 2.05776 2.11201 3.20133 3.36091 3.41066 3.47503 3.48364 3.74875 4.27969 4.49310 4.55068 4.80664 5.10159 5.21355 5.22841 5.27870 5.45077 5.46546 5.48688 5.52638 5.54525 5.64934 5.73240 5.79138 5.85462 5.91187 5.99118 6.02599 6.20289 6.28582 6.37330 6.47081 6.55172 6.56411 6.58497 6.65785 6.79481 6.98590 7.09725 7.10964 7.22857 7.54128 7.68458 7.71879 7.77814 7.79735 8.50220 8.75814 8.98566 9.64371 11.12968 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014659 B = 0.003518 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.571371 B = 7956.553726 C = 8781.967125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.055 4.055 3 C -0.172 4.172 4 C 0.127 3.873 5 O -0.496 6.496 6 C -0.155 4.155 7 C 0.187 3.813 8 N -0.691 5.691 9 C 0.511 3.489 10 O -0.473 6.473 11 C -0.115 4.115 12 C 0.044 3.956 13 H 0.061 0.939 14 C -0.489 4.489 15 H 0.071 0.929 16 C 0.087 3.913 17 N -0.897 5.897 18 Si 0.872 3.128 19 H -0.281 1.281 20 H -0.258 1.258 21 H -0.290 1.290 22 C -0.039 4.039 23 C -0.100 4.100 24 C -0.126 4.126 25 C -0.149 4.149 26 C -0.124 4.124 27 C -0.140 4.140 28 C -0.164 4.164 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.124 0.876 33 H 0.387 0.613 34 H 0.140 0.860 35 H 0.406 0.594 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.262 0.738 39 H 0.120 0.880 40 H 0.110 0.890 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.043 -0.059 -15.690 18.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.055 4.055 3 C -0.192 4.192 4 C 0.082 3.918 5 O -0.306 6.306 6 C -0.176 4.176 7 C 0.091 3.909 8 N -0.338 5.338 9 C 0.299 3.701 10 O -0.342 6.342 11 C -0.155 4.155 12 C 0.024 3.976 13 H 0.078 0.922 14 C -0.525 4.525 15 H 0.089 0.911 16 C -0.116 4.116 17 N -0.534 5.534 18 Si 0.701 3.299 19 H -0.207 1.207 20 H -0.183 1.183 21 H -0.216 1.216 22 C -0.039 4.039 23 C -0.118 4.118 24 C -0.145 4.145 25 C -0.167 4.167 26 C -0.143 4.143 27 C -0.158 4.158 28 C -0.184 4.184 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.142 0.858 33 H 0.242 0.758 34 H 0.158 0.842 35 H 0.241 0.759 36 H 0.091 0.909 37 H 0.105 0.895 38 H 0.072 0.928 39 H 0.138 0.862 40 H 0.129 0.871 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.127 0.873 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.627 0.603 -14.351 16.755 hybrid contribution 0.747 0.243 -0.699 1.052 sum -7.880 0.846 -15.049 17.009 Atomic orbital electron populations 1.20766 0.90871 1.02934 1.02195 1.19468 0.95824 0.92076 0.98176 1.21142 0.93246 0.98131 1.06653 1.18223 0.89603 0.84879 0.99071 1.84861 1.76767 1.35824 1.33108 1.21407 1.01702 0.90582 1.03862 1.17532 0.90508 0.86102 0.96749 1.43938 1.24065 1.11900 1.53900 1.21133 0.80073 0.90948 0.77971 1.90782 1.68303 1.40078 1.35061 1.21686 0.98531 0.94458 1.00816 1.18364 0.90164 0.92114 0.96931 0.92155 1.20584 1.14117 1.27878 0.89964 0.91063 1.24880 0.96572 0.95695 0.94431 1.69880 1.40859 1.39415 1.03261 0.86878 0.82290 0.80647 0.80108 1.20708 1.18303 1.21591 1.20741 0.95002 0.96169 0.92037 1.20976 1.00232 0.91907 0.98733 1.21069 0.94950 0.98354 1.00083 1.20872 0.96843 0.96917 1.02093 1.20963 0.99079 0.93136 1.01075 1.21075 0.95420 0.97982 1.01315 1.20772 0.92120 0.98271 1.07278 0.91168 0.91386 0.91478 0.85776 0.75789 0.84229 0.75874 0.90886 0.89459 0.92785 0.86188 0.87142 0.87375 0.87308 0.87288 0.85650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 10.01 36.01 0.36 -0.58 16 2 C -0.05 -0.65 5.88 -104.67 -0.61 -1.27 16 3 C -0.17 -2.21 9.63 -39.39 -0.38 -2.59 16 4 C 0.13 1.90 6.70 -39.24 -0.26 1.64 16 5 O -0.50 -6.86 13.50 -19.42 -0.26 -7.12 16 6 C -0.15 -2.61 8.59 -39.25 -0.34 -2.95 16 7 C 0.19 2.87 6.25 -83.72 -0.52 2.35 16 8 N -0.69 -10.19 5.34 -9.88 -0.05 -10.24 16 9 C 0.51 9.77 7.30 -10.98 -0.08 9.69 16 10 O -0.47 -11.46 12.77 5.55 0.07 -11.39 16 11 C -0.11 -2.04 4.97 -27.88 -0.14 -2.18 16 12 C 0.04 0.97 1.29 -92.92 -0.12 0.85 16 13 H 0.06 1.45 4.34 -51.93 -0.23 1.23 16 14 C -0.49 -13.30 6.84 -34.44 -0.24 -13.54 16 15 H 0.07 2.10 8.06 -52.49 -0.42 1.67 16 16 C 0.09 2.56 5.47 -17.82 -0.10 2.47 16 17 N -0.90 -28.20 13.96 55.43 0.77 -27.42 16 18 Si 0.87 22.96 27.67 -169.99 -4.70 18.26 16 19 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 20 H -0.26 -6.49 5.88 56.52 0.33 -6.16 16 21 H -0.29 -7.77 7.11 56.52 0.40 -7.37 16 22 C -0.04 -0.80 4.77 -104.62 -0.50 -1.30 16 23 C -0.10 -1.92 8.88 -39.58 -0.35 -2.27 16 24 C -0.13 -2.11 10.05 -39.58 -0.40 -2.51 16 25 C -0.15 -2.38 10.05 -39.58 -0.40 -2.78 16 26 C -0.12 -2.09 10.05 -39.58 -0.40 -2.49 16 27 C -0.14 -2.68 9.67 -39.58 -0.38 -3.06 16 28 C -0.16 -2.10 9.61 -39.37 -0.38 -2.48 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 31 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 32 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 33 H 0.39 3.13 9.06 45.56 0.41 3.54 16 34 H 0.14 2.66 6.53 -52.48 -0.34 2.32 16 35 H 0.41 4.32 8.82 -40.82 -0.36 3.95 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.09 1.43 7.90 -51.93 -0.41 1.02 16 38 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 39 H 0.12 2.26 7.82 -52.49 -0.41 1.85 16 40 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 41 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 42 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 43 H 0.11 2.02 7.95 -52.49 -0.42 1.60 16 44 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 370.86 15.07 5.59 5.59 Total: -1.00 -36.03 370.86 -9.00 -45.03 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -5.18 Total: 10.29 kcal Atomic # 6 Polarization: -17.75 SS G_CDS: -5.23 Total: -22.98 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 0.72 Total: -37.67 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: -0.19 Total: -18.52 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -4.70 Total: 18.26 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.03 -9.00 -45.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170122765.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.139 kcal (2) G-P(sol) polarization free energy of solvation -36.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds