Wall clock time and date at job start Tue Mar 31 2020 13:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38214 * 119.93595 * 2 1 4 4 C 1.38767 * 120.08299 * 179.97438 * 3 2 1 5 5 O 1.35897 * 120.02031 * 179.97438 * 4 3 2 6 6 C 1.38629 * 119.95821 * 0.02562 * 4 3 2 7 7 C 1.38754 * 119.87793 * 0.02562 * 6 4 3 8 8 N 1.39917 * 120.04433 * 180.02562 * 7 6 4 9 9 C 1.34779 * 120.00014 * 34.73057 * 8 7 6 10 10 O 1.21292 * 119.99741 * 5.42082 * 9 8 7 11 11 C 1.50699 * 120.00055 * 185.42014 * 9 8 7 12 12 C 1.53004 * 109.47098 * 179.97438 * 11 9 8 13 13 H 1.08996 * 109.47312 * 305.00273 * 12 11 9 14 14 C 1.50703 * 109.46710 * 64.99854 * 12 11 9 15 15 H 1.07999 * 119.99837 * 34.91651 * 14 12 11 16 16 C 1.37881 * 120.00140 * 214.90509 * 14 12 11 17 17 N 1.31506 * 120.00331 * 184.86339 * 16 14 12 18 18 Si 1.86799 * 119.99678 * 5.14397 * 16 14 12 19 19 H 1.48501 * 109.47457 * 264.97049 * 18 16 14 20 20 H 1.48503 * 109.47301 * 24.96870 * 18 16 14 21 21 H 1.48499 * 109.47311 * 144.96819 * 18 16 14 22 22 C 1.50693 * 109.46965 * 184.99936 * 12 11 9 23 23 C 1.38239 * 120.00182 * 294.75727 * 22 12 11 24 24 C 1.38232 * 120.00031 * 179.79383 * 23 22 12 25 25 C 1.38234 * 120.00075 * 0.43258 * 24 23 22 26 26 C 1.38238 * 120.00021 * 359.82056 * 25 24 23 27 27 C 1.38234 * 119.99969 * 359.97430 * 26 25 24 28 28 C 1.38129 * 119.93711 * 180.25694 * 2 1 3 29 29 H 1.08994 * 109.47268 * 89.99853 * 1 2 3 30 30 H 1.09005 * 109.46846 * 210.00023 * 1 2 3 31 31 H 1.09001 * 109.47306 * 329.99369 * 1 2 3 32 32 H 1.08000 * 119.95602 * 0.02562 * 3 2 1 33 33 H 0.96696 * 114.00218 * 270.02321 * 5 4 3 34 34 H 1.08006 * 120.05672 * 180.02562 * 6 4 3 35 35 H 0.96993 * 120.00342 * 214.73638 * 8 7 6 36 36 H 1.09004 * 109.47043 * 60.00139 * 11 9 8 37 37 H 1.09001 * 109.46977 * 300.00204 * 11 9 8 38 38 H 0.97000 * 120.00376 * 180.27560 * 17 16 14 39 39 H 1.07999 * 119.99692 * 359.97438 * 23 22 12 40 40 H 1.08004 * 120.00403 * 180.27346 * 24 23 22 41 41 H 1.08001 * 120.00409 * 179.83630 * 25 24 23 42 42 H 1.08001 * 120.00597 * 179.97438 * 26 25 24 43 43 H 1.07997 * 120.00496 * 180.02562 * 27 26 25 44 44 H 1.07998 * 119.97751 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1967 1.1977 0.0000 4 6 3.5844 1.2013 0.0005 5 8 4.2613 2.3797 0.0000 6 6 4.2798 0.0020 0.0005 7 6 3.5856 -1.1994 -0.0005 8 7 4.2839 -2.4119 0.0000 9 6 5.4507 -2.5173 0.6663 10 8 5.8467 -1.5937 1.3456 11 6 6.2634 -3.7825 0.5673 12 6 7.5316 -3.6414 1.4115 13 1 8.0766 -2.7496 1.1023 14 6 7.1560 -3.5215 2.8661 15 1 6.3052 -4.0643 3.2506 16 6 7.8987 -2.7190 3.7060 17 7 7.6307 -2.6882 4.9931 18 14 9.2806 -1.6695 3.0144 19 1 10.5690 -2.3955 3.1497 20 1 9.0189 -1.3891 1.5798 21 1 9.3527 -0.3895 3.7638 22 6 8.4028 -4.8554 1.2160 23 6 7.9653 -6.0959 1.6414 24 6 8.7626 -7.2101 1.4582 25 6 10.0011 -7.0826 0.8577 26 6 10.4409 -5.8414 0.4371 27 6 9.6418 -4.7278 0.6164 28 6 2.1963 -1.1970 -0.0054 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8899 0.5139 32 1 1.6550 2.1320 0.0004 33 1 4.4572 2.7204 -0.8835 34 1 5.3598 0.0029 0.0014 35 1 3.9284 -3.1766 -0.4792 36 1 6.5375 -3.9578 -0.4730 37 1 5.6738 -4.6226 0.9343 38 1 8.1505 -2.1206 5.5834 39 1 6.9994 -6.1948 2.1142 40 1 8.4190 -8.1800 1.7866 41 1 10.6252 -7.9528 0.7170 42 1 11.4087 -5.7416 -0.0317 43 1 9.9850 -3.7581 0.2874 44 1 1.6550 -2.1314 -0.0100 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170122765.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:15 Heat of formation + Delta-G solvation = -55.577462 kcal Electronic energy + Delta-G solvation = -26748.938926 eV Core-core repulsion = 23016.006003 eV Total energy + Delta-G solvation = -3732.932923 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.60604 -40.36157 -39.74635 -37.97383 -36.12106 -35.57795 -33.78522 -32.67109 -31.60652 -30.88810 -29.92139 -27.90346 -27.74584 -24.66569 -23.44516 -23.27421 -22.97372 -21.34317 -20.81224 -19.32793 -19.07445 -18.18885 -17.54334 -17.27704 -17.17182 -16.74474 -16.46469 -15.93590 -15.77458 -15.54788 -15.38298 -14.94278 -14.62462 -14.38800 -14.16339 -14.10469 -13.93681 -13.76698 -13.49811 -13.33036 -13.21020 -12.90055 -12.87258 -12.68648 -12.45607 -12.09563 -11.90768 -11.84242 -11.73094 -11.45747 -11.18745 -10.95563 -10.76024 -10.57627 -9.63511 -9.54875 -9.32232 -9.08500 -8.25729 -6.21576 0.21729 0.30073 0.67237 0.72341 1.24351 1.31066 1.37337 1.78116 2.13459 2.36317 2.67293 3.06171 3.20550 3.25883 3.85760 3.96729 4.10708 4.19289 4.21911 4.27590 4.30527 4.41574 4.42840 4.44978 4.48719 4.61359 4.73575 4.83821 4.86128 4.90160 4.90428 5.04724 5.18889 5.19967 5.29473 5.36907 5.40102 5.40896 5.49092 5.58140 5.66387 5.76139 5.81460 5.98385 6.00939 6.30879 6.34927 6.56787 6.78195 6.82025 7.36478 7.42369 8.91510 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014659 B = 0.003518 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.571371 B = 7956.553726 C = 8781.967125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.050 4.050 3 C -0.171 4.171 4 C 0.116 3.884 5 O -0.512 6.512 6 C -0.188 4.188 7 C 0.165 3.835 8 N -0.670 5.670 9 C 0.508 3.492 10 O -0.536 6.536 11 C -0.109 4.109 12 C 0.044 3.956 13 H 0.041 0.959 14 C -0.461 4.461 15 H 0.037 0.963 16 C 0.025 3.975 17 N -0.952 5.952 18 Si 0.919 3.081 19 H -0.269 1.269 20 H -0.247 1.247 21 H -0.303 1.303 22 C -0.063 4.063 23 C -0.118 4.118 24 C -0.124 4.124 25 C -0.140 4.140 26 C -0.123 4.123 27 C -0.157 4.157 28 C -0.160 4.160 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.148 0.852 33 H 0.409 0.591 34 H 0.105 0.895 35 H 0.427 0.573 36 H 0.112 0.888 37 H 0.103 0.897 38 H 0.258 0.742 39 H 0.111 0.889 40 H 0.140 0.860 41 H 0.147 0.853 42 H 0.140 0.860 43 H 0.108 0.892 44 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.938 -1.919 -18.390 20.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.051 4.051 3 C -0.190 4.190 4 C 0.071 3.929 5 O -0.325 6.325 6 C -0.209 4.209 7 C 0.070 3.930 8 N -0.319 5.319 9 C 0.297 3.703 10 O -0.410 6.410 11 C -0.149 4.149 12 C 0.025 3.975 13 H 0.059 0.941 14 C -0.499 4.499 15 H 0.056 0.944 16 C -0.171 4.171 17 N -0.594 5.594 18 Si 0.746 3.254 19 H -0.194 1.194 20 H -0.171 1.171 21 H -0.230 1.230 22 C -0.063 4.063 23 C -0.136 4.136 24 C -0.142 4.142 25 C -0.158 4.158 26 C -0.141 4.141 27 C -0.175 4.175 28 C -0.181 4.181 29 H 0.111 0.889 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.165 0.835 33 H 0.268 0.732 34 H 0.123 0.877 35 H 0.266 0.734 36 H 0.130 0.870 37 H 0.121 0.879 38 H 0.067 0.933 39 H 0.129 0.871 40 H 0.158 0.842 41 H 0.164 0.836 42 H 0.158 0.842 43 H 0.126 0.874 44 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -9.553 -1.288 -17.143 19.668 hybrid contribution 0.922 0.751 0.010 1.189 sum -8.631 -0.537 -17.134 19.193 Atomic orbital electron populations 1.20855 0.87800 1.03957 1.03899 1.19971 0.97925 0.91248 0.95922 1.21437 0.92243 0.99734 1.05629 1.18407 0.90657 0.84475 0.99335 1.84788 1.76960 1.35466 1.35324 1.21352 1.00343 0.92488 1.06721 1.17755 0.91698 0.85517 0.98069 1.43588 1.22710 1.12720 1.52868 1.21386 0.80990 0.90478 0.77397 1.90768 1.70053 1.42028 1.38105 1.21614 0.96631 0.94335 1.02299 1.18228 0.92379 0.92634 0.94265 0.94121 1.20825 1.11620 1.25061 0.92385 0.94437 1.25562 0.99274 0.97593 0.94658 1.70018 1.43101 1.41682 1.04607 0.86129 0.80554 0.78805 0.79887 1.19439 1.17102 1.23025 1.20462 0.95489 0.95682 0.94684 1.21025 1.00683 0.92443 0.99414 1.21413 0.94936 0.98712 0.99170 1.21349 0.96570 0.97901 0.99970 1.21336 0.99884 0.92584 1.00315 1.21217 0.95224 0.99115 1.01938 1.21097 0.90862 1.00064 1.06032 0.88949 0.90365 0.90525 0.83456 0.73248 0.87655 0.73378 0.87028 0.87876 0.93333 0.87071 0.84237 0.83563 0.84211 0.87412 0.82789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.43 10.01 71.24 0.71 -0.71 16 2 C -0.05 -1.07 5.88 -19.90 -0.12 -1.19 16 3 C -0.17 -4.16 9.63 22.39 0.22 -3.94 16 4 C 0.12 3.55 6.70 22.49 0.15 3.70 16 5 O -0.51 -14.56 13.50 -92.39 -1.25 -15.81 16 6 C -0.19 -6.68 8.59 22.49 0.19 -6.48 16 7 C 0.16 5.09 6.25 38.14 0.24 5.33 16 8 N -0.67 -19.69 5.34 -303.55 -1.62 -21.31 16 9 C 0.51 19.98 7.30 87.66 0.64 20.62 16 10 O -0.54 -27.48 12.77 -3.07 -0.04 -27.52 16 11 C -0.11 -3.87 4.97 29.85 0.15 -3.72 16 12 C 0.04 2.01 1.29 -12.29 -0.02 1.99 16 13 H 0.04 2.01 4.34 -2.39 -0.01 2.00 16 14 C -0.46 -26.23 6.84 25.60 0.18 -26.06 16 15 H 0.04 2.33 8.06 -2.91 -0.02 2.31 16 16 C 0.03 1.57 5.47 84.66 0.46 2.03 16 17 N -0.95 -63.28 13.96 21.45 0.30 -62.98 16 18 Si 0.92 49.45 27.67 68.60 1.90 51.35 16 19 H -0.27 -13.72 7.11 99.48 0.71 -13.02 16 20 H -0.25 -12.64 5.88 99.48 0.58 -12.06 16 21 H -0.30 -16.75 7.11 99.48 0.71 -16.04 16 22 C -0.06 -2.53 4.77 -19.87 -0.09 -2.63 16 23 C -0.12 -4.36 8.88 22.27 0.20 -4.16 16 24 C -0.12 -3.77 10.05 22.27 0.22 -3.54 16 25 C -0.14 -3.86 10.05 22.27 0.22 -3.64 16 26 C -0.12 -3.71 10.05 22.27 0.22 -3.48 16 27 C -0.16 -5.76 9.67 22.27 0.22 -5.55 16 28 C -0.16 -3.81 9.61 22.41 0.22 -3.60 16 29 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.08 0.91 8.09 -2.38 -0.02 0.89 16 31 H 0.08 0.90 8.08 -2.39 -0.02 0.88 16 32 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 33 H 0.41 6.79 9.06 -74.06 -0.67 6.12 16 34 H 0.11 4.41 6.53 -2.91 -0.02 4.39 16 35 H 0.43 8.43 8.82 -92.71 -0.82 7.61 16 36 H 0.11 3.09 8.14 -2.39 -0.02 3.07 16 37 H 0.10 3.32 7.90 -2.39 -0.02 3.30 16 38 H 0.26 16.41 8.31 -92.71 -0.77 15.64 16 39 H 0.11 4.21 7.82 -2.91 -0.02 4.18 16 40 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 41 H 0.15 2.96 8.06 -2.91 -0.02 2.93 16 42 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 43 H 0.11 3.89 7.95 -2.91 -0.02 3.87 16 44 H 0.15 2.70 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -85.00 370.86 2.73 -82.27 By element: Atomic # 1 Polarization: 29.60 SS G_CDS: -0.57 Total: 29.02 kcal Atomic # 6 Polarization: -39.03 SS G_CDS: 4.01 Total: -35.02 kcal Atomic # 7 Polarization: -82.97 SS G_CDS: -1.32 Total: -84.29 kcal Atomic # 8 Polarization: -42.05 SS G_CDS: -1.29 Total: -43.33 kcal Atomic # 14 Polarization: 49.45 SS G_CDS: 1.90 Total: 51.35 kcal Total: -85.00 2.73 -82.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170122765.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.691 kcal (2) G-P(sol) polarization free energy of solvation -84.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds