Wall clock time and date at job start Tue Mar 31 2020 15:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36090 * 116.99922 * 2 1 4 4 C 1.38536 * 120.00158 * 359.97438 * 3 2 1 5 5 C 1.38208 * 120.07264 * 179.72106 * 4 3 2 6 6 C 1.50700 * 119.96136 * 180.29624 * 5 4 3 7 7 C 1.50701 * 109.47365 * 265.25511 * 6 5 4 8 8 H 1.08003 * 119.99957 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99846 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00111 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99643 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47036 * 90.00138 * 11 9 7 13 13 H 1.48502 * 109.46898 * 210.00365 * 11 9 7 14 14 H 1.48496 * 109.47365 * 330.00251 * 11 9 7 15 15 C 1.38859 * 120.07003 * 0.56127 * 5 4 3 16 16 N 1.39924 * 120.00397 * 179.74458 * 15 5 4 17 17 C 1.46496 * 120.00084 * 179.71956 * 16 15 5 18 18 C 1.53006 * 109.47070 * 179.97438 * 17 16 15 19 19 C 1.52999 * 109.46626 * 64.99833 * 18 17 16 20 20 C 1.52997 * 109.47164 * 185.00131 * 18 17 16 21 21 S 1.81400 * 109.47145 * 305.00429 * 18 17 16 22 22 C 1.38828 * 119.99737 * 359.46378 * 15 5 4 23 23 C 1.38522 * 119.92945 * 0.25470 * 22 15 5 24 24 O 1.35988 * 120.03334 * 179.97438 * 23 22 15 25 25 C 1.42894 * 117.00495 * 0.02562 * 24 23 22 26 26 H 1.09001 * 109.46915 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46931 * 299.99748 * 1 2 3 28 28 H 1.08993 * 109.47404 * 60.00280 * 1 2 3 29 29 H 1.08002 * 119.96221 * 359.97438 * 4 3 2 30 30 H 1.08995 * 109.47361 * 25.26343 * 6 5 4 31 31 H 1.09006 * 109.46794 * 145.25994 * 6 5 4 32 32 H 0.96996 * 119.99773 * 180.02562 * 10 9 7 33 33 H 0.97001 * 119.99511 * 359.71884 * 16 15 5 34 34 H 1.09004 * 109.47055 * 60.00396 * 17 16 15 35 35 H 1.08992 * 109.47401 * 299.99704 * 17 16 15 36 36 H 1.09000 * 109.47160 * 60.00369 * 19 18 17 37 37 H 1.09002 * 109.46719 * 180.02562 * 19 18 17 38 38 H 1.08993 * 109.47839 * 299.99931 * 19 18 17 39 39 H 1.09001 * 109.47375 * 59.99966 * 20 18 17 40 40 H 1.09002 * 109.46777 * 180.02562 * 20 18 17 41 41 H 1.09000 * 109.47140 * 299.99948 * 20 18 17 42 42 H 1.34500 * 102.99816 * 299.99779 * 21 18 17 43 43 H 1.08004 * 120.03706 * 180.28437 * 22 15 5 44 44 H 1.09000 * 109.46879 * 300.00693 * 25 24 23 45 45 H 1.09006 * 109.46636 * 59.99740 * 25 24 23 46 46 H 1.08993 * 109.47586 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2126 0.0000 4 6 1.2923 2.3745 -0.0005 5 6 1.9182 3.6067 0.0053 6 6 1.0950 4.8689 0.0114 7 6 0.9188 5.3607 -1.4021 8 1 1.3586 4.8137 -2.2230 9 6 0.1962 6.5091 -1.6475 10 7 -0.3390 7.1755 -0.6479 11 14 -0.0228 7.1182 -3.3998 12 1 -1.2500 6.5186 -3.9825 13 1 -0.1479 8.5980 -3.3974 14 1 1.1554 6.7224 -4.2123 15 6 3.3047 3.6828 -0.0001 16 7 3.9369 4.9311 0.0004 17 6 5.3997 5.0114 0.0010 18 6 5.8299 6.4797 0.0008 19 6 5.3877 7.1407 1.3078 20 6 7.3523 6.5651 -0.1244 21 16 5.0589 7.3355 -1.4006 22 6 4.0637 2.5204 -0.0001 23 6 3.4363 1.2854 0.0000 24 8 4.1777 0.1454 -0.0005 25 6 5.5988 0.2955 -0.0005 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8899 29 1 0.2138 2.3172 -0.0014 30 1 0.1181 4.6635 0.4491 31 1 1.6040 5.6318 0.6007 32 1 -0.8476 7.9831 -0.8206 33 1 3.4065 5.7433 0.0004 34 1 5.7909 4.5185 -0.8891 35 1 5.7903 4.5181 0.8909 36 1 5.8509 6.6265 2.1499 37 1 5.6937 8.1869 1.3075 38 1 4.3031 7.0800 1.3970 39 1 7.6673 6.0941 -1.0556 40 1 7.6588 7.6111 -0.1240 41 1 7.8155 6.0508 0.7177 42 1 5.5289 6.6590 -2.4638 43 1 5.1421 2.5789 0.0004 44 1 5.9060 0.8452 -0.8902 45 1 5.9060 0.8444 0.8897 46 1 6.0681 -0.6881 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170306378.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:15 Heat of formation + Delta-G solvation = -52.151667 kcal Electronic energy + Delta-G solvation = -26451.775124 eV Core-core repulsion = 22854.434706 eV Total energy + Delta-G solvation = -3597.340418 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.01820 -37.95185 -37.88173 -36.29199 -33.13723 -32.94701 -30.74456 -28.69817 -27.75079 -27.50918 -26.85411 -26.42102 -24.62522 -22.98301 -21.39267 -20.58807 -20.15606 -17.96666 -17.20679 -16.72900 -16.40421 -16.20193 -15.57694 -15.27226 -15.16032 -14.81167 -14.65414 -14.51876 -14.08124 -13.92123 -13.65778 -13.28183 -13.09749 -12.52952 -12.43971 -12.32216 -12.03657 -11.88739 -11.69247 -11.60419 -11.35466 -11.29441 -11.22212 -11.02097 -10.92599 -10.76055 -10.58598 -10.46299 -10.39244 -9.89678 -9.47672 -9.33736 -8.68741 -8.35427 -7.81742 -7.71208 -6.31653 -5.93853 -3.99857 1.72428 2.05107 2.33763 2.88349 3.34354 3.40893 3.45277 3.69120 3.86847 4.01080 4.42662 4.49576 4.58602 4.72504 4.90704 5.23168 5.32169 5.34953 5.35865 5.40274 5.45072 5.51354 5.55793 5.59738 5.61051 5.65829 5.70437 5.76040 5.80805 5.85359 5.89383 6.00907 6.03857 6.21099 6.23942 6.59070 6.90775 7.09466 7.25684 7.50602 7.59231 7.79552 7.93769 7.99328 8.25121 8.39581 8.51663 9.04381 9.64171 11.11830 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.008015 B = 0.006045 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3492.560045 B = 4630.544222 C = 7372.897451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.319 6.319 3 C 0.035 3.965 4 C -0.128 4.128 5 C -0.099 4.099 6 C 0.062 3.938 7 C -0.502 4.502 8 H 0.054 0.946 9 C 0.064 3.936 10 N -0.893 5.893 11 Si 0.888 3.112 12 H -0.283 1.283 13 H -0.286 1.286 14 H -0.275 1.275 15 C 0.221 3.779 16 N -0.732 5.732 17 C 0.136 3.864 18 C -0.029 4.029 19 C -0.129 4.129 20 C -0.141 4.141 21 S -0.209 6.209 22 C -0.257 4.257 23 C 0.113 3.887 24 O -0.312 6.312 25 C 0.032 3.968 26 H 0.088 0.912 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.130 0.870 30 H 0.026 0.974 31 H 0.024 0.976 32 H 0.260 0.740 33 H 0.421 0.579 34 H 0.047 0.953 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.053 0.947 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.121 0.879 44 H 0.047 0.953 45 H 0.048 0.952 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.341 -5.959 4.027 15.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.233 6.233 3 C -0.010 4.010 4 C -0.148 4.148 5 C -0.103 4.103 6 C 0.025 3.975 7 C -0.541 4.541 8 H 0.072 0.928 9 C -0.137 4.137 10 N -0.533 5.533 11 Si 0.716 3.284 12 H -0.209 1.209 13 H -0.212 1.212 14 H -0.200 1.200 15 C 0.118 3.882 16 N -0.368 5.368 17 C 0.008 3.992 18 C -0.140 4.140 19 C -0.187 4.187 20 C -0.200 4.200 21 S -0.056 6.056 22 C -0.281 4.281 23 C 0.067 3.933 24 O -0.226 6.226 25 C -0.063 4.063 26 H 0.107 0.893 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.148 0.852 30 H 0.044 0.956 31 H 0.042 0.958 32 H 0.070 0.930 33 H 0.263 0.737 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.072 0.928 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.042 0.958 43 H 0.139 0.861 44 H 0.066 0.934 45 H 0.067 0.933 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 12.975 -5.605 3.538 14.570 hybrid contribution 0.480 -0.034 -1.310 1.396 sum 13.454 -5.639 2.228 14.757 Atomic orbital electron populations 1.22899 0.79727 1.02619 1.01239 1.86054 1.20035 1.26616 1.90626 1.17931 0.88685 0.84811 1.09621 1.20764 0.99452 0.90398 1.04160 1.19939 0.91669 0.96854 1.01865 1.18099 0.93846 0.88083 0.97470 1.21014 1.32606 1.08531 0.91919 0.92771 1.24909 0.95607 0.96563 0.96615 1.69939 1.35246 1.17631 1.30450 0.86651 0.78347 0.77926 0.85459 1.20893 1.21204 1.20044 1.17266 0.91020 0.84845 0.95100 1.44844 1.03515 1.06280 1.82159 1.21349 0.83810 0.93317 1.00677 1.22799 0.97789 0.96955 0.96490 1.21666 1.03376 1.00667 0.93029 1.22157 0.92227 1.03456 1.02163 1.87840 1.67562 1.46460 1.03723 1.20270 0.98794 0.90386 1.18643 1.17712 0.87762 0.84897 1.02891 1.86107 1.17729 1.29026 1.89761 1.22882 0.80023 1.02706 1.00718 0.89317 0.93184 0.92988 0.85202 0.95573 0.95753 0.93001 0.73706 0.93484 0.91845 0.90933 0.91322 0.90592 0.92763 0.90702 0.91314 0.95753 0.86091 0.93417 0.93321 0.89108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 9.81 101.05 0.99 1.43 16 2 O -0.32 -5.87 10.28 -34.63 -0.36 -6.22 16 3 C 0.04 0.69 6.70 -39.14 -0.26 0.43 16 4 C -0.13 -2.62 8.66 -39.48 -0.34 -2.96 16 5 C -0.10 -2.16 5.09 -104.40 -0.53 -2.69 16 6 C 0.06 1.54 4.53 -29.03 -0.13 1.41 16 7 C -0.50 -13.65 9.09 -34.44 -0.31 -13.96 16 8 H 0.05 1.51 7.74 -52.48 -0.41 1.11 16 9 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 10 N -0.89 -25.66 13.29 55.43 0.74 -24.92 16 11 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 15 C 0.22 4.32 6.63 -83.72 -0.56 3.77 16 16 N -0.73 -12.95 5.03 -58.60 -0.29 -13.25 16 17 C 0.14 1.84 3.81 -4.04 -0.02 1.82 16 18 C -0.03 -0.36 0.88 -90.62 -0.08 -0.44 16 19 C -0.13 -1.49 8.35 37.16 0.31 -1.18 16 20 C -0.14 -1.27 8.48 37.16 0.32 -0.96 16 21 S -0.21 -3.25 23.48 -107.50 -2.52 -5.77 16 22 C -0.26 -4.54 8.30 -39.26 -0.33 -4.86 16 23 C 0.11 2.11 6.70 -39.14 -0.26 1.85 16 24 O -0.31 -5.36 10.28 -34.31 -0.35 -5.71 16 25 C 0.03 0.39 9.81 101.05 0.99 1.38 16 26 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.05 0.67 7.66 -51.93 -0.40 0.27 16 28 H 0.05 0.73 7.66 -51.93 -0.40 0.33 16 29 H 0.13 2.52 6.29 -52.49 -0.33 2.19 16 30 H 0.03 0.69 8.05 -51.93 -0.42 0.27 16 31 H 0.02 0.63 6.81 -51.93 -0.35 0.27 16 32 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 33 H 0.42 8.35 4.99 -40.82 -0.20 8.14 16 34 H 0.05 0.64 7.95 -51.93 -0.41 0.22 16 35 H 0.06 0.76 7.95 -51.93 -0.41 0.34 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 1.06 7.18 -51.93 -0.37 0.69 16 39 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.08 1.21 9.07 97.61 0.89 2.09 16 43 H 0.12 1.80 4.97 -52.48 -0.26 1.54 16 44 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 45 H 0.05 0.52 7.66 -51.93 -0.40 0.13 16 46 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 382.46 15.07 5.76 5.76 Total: -1.00 -31.24 382.46 -8.33 -39.56 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -5.97 Total: 7.13 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: -0.31 Total: -13.27 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: 0.44 Total: -38.17 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: -0.71 Total: -11.94 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: -3.25 SS G_CDS: -2.52 Total: -5.77 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.24 -8.33 -39.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170306378.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.588 kcal (2) G-P(sol) polarization free energy of solvation -31.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds