Wall clock time and date at job start Tue Mar 31 2020 15:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36090 * 116.99922 * 2 1 4 4 C 1.38536 * 120.00158 * 359.97438 * 3 2 1 5 5 C 1.38208 * 120.07264 * 179.72106 * 4 3 2 6 6 C 1.50700 * 119.96136 * 180.29624 * 5 4 3 7 7 C 1.50701 * 109.47365 * 265.25511 * 6 5 4 8 8 H 1.08003 * 119.99957 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99846 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00111 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99643 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47036 * 90.00138 * 11 9 7 13 13 H 1.48502 * 109.46898 * 210.00365 * 11 9 7 14 14 H 1.48496 * 109.47365 * 330.00251 * 11 9 7 15 15 C 1.38859 * 120.07003 * 0.56127 * 5 4 3 16 16 N 1.39924 * 120.00397 * 179.74458 * 15 5 4 17 17 C 1.46496 * 120.00084 * 179.71956 * 16 15 5 18 18 C 1.53006 * 109.47070 * 179.97438 * 17 16 15 19 19 C 1.52999 * 109.46626 * 64.99833 * 18 17 16 20 20 C 1.52997 * 109.47164 * 185.00131 * 18 17 16 21 21 S 1.81400 * 109.47145 * 305.00429 * 18 17 16 22 22 C 1.38828 * 119.99737 * 359.46378 * 15 5 4 23 23 C 1.38522 * 119.92945 * 0.25470 * 22 15 5 24 24 O 1.35988 * 120.03334 * 179.97438 * 23 22 15 25 25 C 1.42894 * 117.00495 * 0.02562 * 24 23 22 26 26 H 1.09001 * 109.46915 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46931 * 299.99748 * 1 2 3 28 28 H 1.08993 * 109.47404 * 60.00280 * 1 2 3 29 29 H 1.08002 * 119.96221 * 359.97438 * 4 3 2 30 30 H 1.08995 * 109.47361 * 25.26343 * 6 5 4 31 31 H 1.09006 * 109.46794 * 145.25994 * 6 5 4 32 32 H 0.96996 * 119.99773 * 180.02562 * 10 9 7 33 33 H 0.97001 * 119.99511 * 359.71884 * 16 15 5 34 34 H 1.09004 * 109.47055 * 60.00396 * 17 16 15 35 35 H 1.08992 * 109.47401 * 299.99704 * 17 16 15 36 36 H 1.09000 * 109.47160 * 60.00369 * 19 18 17 37 37 H 1.09002 * 109.46719 * 180.02562 * 19 18 17 38 38 H 1.08993 * 109.47839 * 299.99931 * 19 18 17 39 39 H 1.09001 * 109.47375 * 59.99966 * 20 18 17 40 40 H 1.09002 * 109.46777 * 180.02562 * 20 18 17 41 41 H 1.09000 * 109.47140 * 299.99948 * 20 18 17 42 42 H 1.34500 * 102.99816 * 299.99779 * 21 18 17 43 43 H 1.08004 * 120.03706 * 180.28437 * 22 15 5 44 44 H 1.09000 * 109.46879 * 300.00693 * 25 24 23 45 45 H 1.09006 * 109.46636 * 59.99740 * 25 24 23 46 46 H 1.08993 * 109.47586 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2126 0.0000 4 6 1.2923 2.3745 -0.0005 5 6 1.9182 3.6067 0.0053 6 6 1.0950 4.8689 0.0114 7 6 0.9188 5.3607 -1.4021 8 1 1.3586 4.8137 -2.2230 9 6 0.1962 6.5091 -1.6475 10 7 -0.3390 7.1755 -0.6479 11 14 -0.0228 7.1182 -3.3998 12 1 -1.2500 6.5186 -3.9825 13 1 -0.1479 8.5980 -3.3974 14 1 1.1554 6.7224 -4.2123 15 6 3.3047 3.6828 -0.0001 16 7 3.9369 4.9311 0.0004 17 6 5.3997 5.0114 0.0010 18 6 5.8299 6.4797 0.0008 19 6 5.3877 7.1407 1.3078 20 6 7.3523 6.5651 -0.1244 21 16 5.0589 7.3355 -1.4006 22 6 4.0637 2.5204 -0.0001 23 6 3.4363 1.2854 0.0000 24 8 4.1777 0.1454 -0.0005 25 6 5.5988 0.2955 -0.0005 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8899 29 1 0.2138 2.3172 -0.0014 30 1 0.1181 4.6635 0.4491 31 1 1.6040 5.6318 0.6007 32 1 -0.8476 7.9831 -0.8206 33 1 3.4065 5.7433 0.0004 34 1 5.7909 4.5185 -0.8891 35 1 5.7903 4.5181 0.8909 36 1 5.8509 6.6265 2.1499 37 1 5.6937 8.1869 1.3075 38 1 4.3031 7.0800 1.3970 39 1 7.6673 6.0941 -1.0556 40 1 7.6588 7.6111 -0.1240 41 1 7.8155 6.0508 0.7177 42 1 5.5289 6.6590 -2.4638 43 1 5.1421 2.5789 0.0004 44 1 5.9060 0.8452 -0.8902 45 1 5.9060 0.8444 0.8897 46 1 6.0681 -0.6881 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170306378.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:14 Heat of formation + Delta-G solvation = -70.380955 kcal Electronic energy + Delta-G solvation = -26452.565606 eV Core-core repulsion = 22854.434706 eV Total energy + Delta-G solvation = -3598.130899 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.42139 -39.24084 -39.16619 -37.50817 -35.12416 -34.22645 -32.47945 -29.96851 -29.27297 -28.36729 -27.94701 -27.85110 -25.98260 -24.76420 -22.68150 -21.95818 -21.46960 -19.29176 -18.46488 -18.36650 -18.02718 -17.71479 -16.84423 -16.66874 -16.34321 -16.30221 -16.00215 -15.77938 -15.39500 -15.11863 -14.85080 -14.57386 -14.41286 -14.06827 -13.75818 -13.50442 -13.32827 -13.17661 -13.08721 -12.87371 -12.68990 -12.65258 -12.49382 -12.29698 -12.29037 -12.18031 -12.03479 -11.95252 -11.94211 -11.35095 -11.30709 -10.96154 -10.51605 -10.11244 -9.22677 -8.99000 -8.17293 -7.68236 -6.20261 0.54755 0.63860 0.83784 1.37881 1.39548 1.48912 1.74083 2.43113 2.47840 2.58288 2.74548 3.01801 3.20648 3.50656 3.77262 3.98364 4.00134 4.28644 4.32052 4.45585 4.46211 4.47283 4.48632 4.54210 4.56862 4.61169 4.73135 4.75999 4.78021 4.78333 4.78919 4.84255 4.90548 5.05705 5.18929 5.25379 5.30606 5.42480 5.47583 5.73357 5.84004 5.96253 6.27774 6.29966 6.56893 6.87698 6.88751 6.98496 7.46824 8.97164 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.008015 B = 0.006045 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3492.560045 B = 4630.544222 C = 7372.897451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.331 6.331 3 C 0.020 3.980 4 C -0.132 4.132 5 C -0.137 4.137 6 C 0.079 3.921 7 C -0.506 4.506 8 H 0.041 0.959 9 C 0.020 3.980 10 N -0.923 5.923 11 Si 0.944 3.056 12 H -0.276 1.276 13 H -0.281 1.281 14 H -0.276 1.276 15 C 0.218 3.782 16 N -0.736 5.736 17 C 0.131 3.869 18 C -0.011 4.011 19 C -0.128 4.128 20 C -0.134 4.134 21 S -0.269 6.269 22 C -0.248 4.248 23 C 0.118 3.882 24 O -0.328 6.328 25 C 0.020 3.980 26 H 0.122 0.878 27 H 0.053 0.947 28 H 0.047 0.953 29 H 0.127 0.873 30 H -0.002 1.002 31 H 0.008 0.992 32 H 0.262 0.738 33 H 0.408 0.592 34 H 0.052 0.948 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.076 0.924 38 H 0.043 0.957 39 H 0.056 0.944 40 H 0.080 0.920 41 H 0.096 0.904 42 H 0.085 0.915 43 H 0.154 0.846 44 H 0.056 0.944 45 H 0.064 0.936 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.057 -7.230 4.085 18.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.246 6.246 3 C -0.026 4.026 4 C -0.151 4.151 5 C -0.142 4.142 6 C 0.042 3.958 7 C -0.544 4.544 8 H 0.060 0.940 9 C -0.178 4.178 10 N -0.563 5.563 11 Si 0.770 3.230 12 H -0.202 1.202 13 H -0.206 1.206 14 H -0.201 1.201 15 C 0.114 3.886 16 N -0.370 5.370 17 C 0.004 3.996 18 C -0.122 4.122 19 C -0.187 4.187 20 C -0.193 4.193 21 S -0.116 6.116 22 C -0.272 4.272 23 C 0.072 3.928 24 O -0.242 6.242 25 C -0.074 4.074 26 H 0.140 0.860 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.145 0.855 30 H 0.016 0.984 31 H 0.026 0.974 32 H 0.071 0.929 33 H 0.247 0.753 34 H 0.070 0.930 35 H 0.109 0.891 36 H 0.119 0.881 37 H 0.095 0.905 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.099 0.901 41 H 0.115 0.885 42 H 0.049 0.951 43 H 0.172 0.828 44 H 0.075 0.925 45 H 0.083 0.917 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 15.722 -6.890 3.594 17.538 hybrid contribution -0.292 0.252 -1.275 1.332 sum 15.431 -6.638 2.319 16.958 Atomic orbital electron populations 1.23155 0.77860 1.04811 1.01209 1.86028 1.22022 1.25990 1.90600 1.18056 0.89535 0.84837 1.10192 1.20736 0.99572 0.90581 1.04235 1.19713 0.92812 0.95749 1.05891 1.17752 0.92795 0.89435 0.95786 1.21167 1.32121 1.08405 0.92681 0.94020 1.25579 0.95461 0.96791 0.99989 1.70036 1.36005 1.18070 1.32187 0.85767 0.78252 0.77604 0.81336 1.20198 1.20599 1.20074 1.17372 0.90387 0.86255 0.94629 1.45022 1.05304 1.05068 1.81591 1.21643 0.81270 0.94602 1.02062 1.22927 0.99543 0.95372 0.94336 1.21694 1.01528 1.01744 0.93698 1.22129 0.89312 1.04427 1.03478 1.88070 1.69269 1.48045 1.06266 1.20465 1.00169 0.89084 1.17477 1.17914 0.87854 0.85845 1.01174 1.86097 1.20421 1.28390 1.89307 1.23281 0.77162 1.05099 1.01863 0.85997 0.92842 0.93427 0.85475 0.98401 0.97368 0.92870 0.75261 0.92974 0.89052 0.88130 0.90475 0.93754 0.92508 0.90090 0.88542 0.95141 0.82831 0.92512 0.91747 0.86265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.68 9.81 113.37 1.11 1.79 16 2 O -0.33 -12.02 10.28 -80.61 -0.83 -12.85 16 3 C 0.02 0.77 6.70 22.56 0.15 0.93 16 4 C -0.13 -5.54 8.66 22.33 0.19 -5.35 16 5 C -0.14 -6.18 5.09 -19.72 -0.10 -6.28 16 6 C 0.08 4.16 4.53 29.10 0.13 4.30 16 7 C -0.51 -28.50 9.09 25.60 0.23 -28.27 16 8 H 0.04 2.41 7.74 -2.91 -0.02 2.38 16 9 C 0.02 1.16 5.46 84.65 0.46 1.62 16 10 N -0.92 -54.63 13.29 21.45 0.28 -54.35 16 11 Si 0.94 45.40 29.54 68.60 2.03 47.42 16 12 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 13 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 14 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 15 C 0.22 8.49 6.63 38.14 0.25 8.75 16 16 N -0.74 -25.87 5.03 -339.31 -1.71 -27.57 16 17 C 0.13 3.21 3.81 86.38 0.33 3.54 16 18 C -0.01 -0.25 0.88 -10.79 -0.01 -0.26 16 19 C -0.13 -2.76 8.35 71.98 0.60 -2.16 16 20 C -0.13 -1.97 8.48 71.98 0.61 -1.36 16 21 S -0.27 -8.38 23.48 -56.49 -1.33 -9.71 16 22 C -0.25 -8.27 8.30 22.48 0.19 -8.09 16 23 C 0.12 4.25 6.70 22.55 0.15 4.40 16 24 O -0.33 -10.43 10.28 -79.44 -0.82 -11.25 16 25 C 0.02 0.41 9.81 113.37 1.11 1.52 16 26 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 27 H 0.05 1.43 7.66 -2.38 -0.02 1.41 16 28 H 0.05 1.35 7.66 -2.39 -0.02 1.33 16 29 H 0.13 5.19 6.29 -2.91 -0.02 5.18 16 30 H 0.00 -0.13 8.05 -2.39 -0.02 -0.15 16 31 H 0.01 0.45 6.81 -2.38 -0.02 0.43 16 32 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 33 H 0.41 16.69 4.99 -92.71 -0.46 16.22 16 34 H 0.05 1.26 7.95 -2.39 -0.02 1.24 16 35 H 0.09 1.79 7.95 -2.39 -0.02 1.77 16 36 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.04 1.25 7.18 -2.39 -0.02 1.23 16 39 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.09 2.58 9.07 73.35 0.67 3.25 16 43 H 0.15 3.97 4.97 -2.91 -0.01 3.96 16 44 H 0.06 1.05 7.66 -2.39 -0.02 1.03 16 45 H 0.06 1.10 7.66 -2.38 -0.02 1.08 16 46 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -70.14 382.46 4.25 -65.89 By element: Atomic # 1 Polarization: 26.13 SS G_CDS: 1.20 Total: 27.33 kcal Atomic # 6 Polarization: -30.35 SS G_CDS: 5.42 Total: -24.93 kcal Atomic # 7 Polarization: -80.50 SS G_CDS: -1.42 Total: -81.92 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -1.65 Total: -24.09 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.42 kcal Atomic # 16 Polarization: -8.38 SS G_CDS: -1.33 Total: -9.71 kcal Total: -70.14 4.25 -65.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170306378.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.489 kcal (2) G-P(sol) polarization free energy of solvation -70.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds