Wall clock time and date at job start Tue Mar 31 2020 14:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50702 * 109.47172 * 2 1 4 4 C 1.38274 * 119.93832 * 269.72267 * 3 2 1 5 5 C 1.38145 * 120.05025 * 179.72675 * 4 3 2 6 6 C 1.38729 * 119.94630 * 0.56616 * 5 4 3 7 7 O 1.35904 * 120.05903 * 179.68739 * 6 5 4 8 8 C 1.42904 * 116.99472 * 0.02562 * 7 6 5 9 9 C 1.50702 * 109.46638 * 180.02562 * 8 7 6 10 10 O 1.21284 * 120.00089 * 0.02562 * 9 8 7 11 11 N 1.34773 * 119.99569 * 180.02562 * 9 8 7 12 12 C 1.39936 * 120.00029 * 174.89147 * 11 9 8 13 13 C 1.39286 * 119.95173 * 145.78159 * 12 11 9 14 14 C 1.38494 * 120.43161 * 179.97438 * 13 12 11 15 15 C 1.37681 * 120.32130 * 359.97438 * 14 13 12 16 16 C 1.40743 * 119.88430 * 0.02562 * 15 14 13 17 17 C 1.41404 * 120.21120 * 179.97438 * 16 15 14 18 18 H 1.07996 * 120.00392 * 205.17436 * 17 16 15 19 19 C 1.39941 * 119.99781 * 25.18207 * 17 16 15 20 20 N 1.30832 * 119.99567 * 16.79026 * 19 17 16 21 21 Si 1.86796 * 119.99994 * 196.79390 * 19 17 16 22 22 H 1.48494 * 109.47420 * 89.99731 * 21 19 17 23 23 H 1.48502 * 109.46897 * 209.99900 * 21 19 17 24 24 H 1.48504 * 109.47112 * 329.99546 * 21 19 17 25 25 C 1.38243 * 119.94456 * 325.51128 * 12 11 9 26 26 C 1.38733 * 119.88965 * 359.70268 * 6 5 4 27 27 C 1.38147 * 119.94117 * 0.02562 * 26 6 5 28 28 H 1.08998 * 109.46837 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46429 * 60.00723 * 1 2 3 30 30 H 1.08997 * 109.47380 * 300.00527 * 1 2 3 31 31 H 1.09001 * 109.46758 * 119.98882 * 2 1 3 32 32 H 1.08997 * 109.47380 * 239.99473 * 2 1 3 33 33 H 1.07997 * 119.97082 * 359.97438 * 4 3 2 34 34 H 1.07998 * 120.02748 * 180.25224 * 5 4 3 35 35 H 1.09002 * 109.46946 * 300.00165 * 8 7 6 36 36 H 1.09000 * 109.47328 * 60.00355 * 8 7 6 37 37 H 0.97001 * 120.00106 * 354.88857 * 11 9 8 38 38 H 1.08008 * 119.78664 * 359.97438 * 13 12 11 39 39 H 1.08006 * 119.83631 * 179.97438 * 14 13 12 40 40 H 1.07994 * 120.05992 * 180.02562 * 15 14 13 41 41 H 0.97005 * 119.99227 * 180.02562 * 20 19 17 42 42 H 1.07997 * 120.16284 * 359.97438 * 25 12 11 43 43 H 1.08002 * 120.03148 * 179.97438 * 26 6 5 44 44 H 1.08005 * 119.97081 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2679 2.0695 -1.1982 5 6 2.7230 3.3738 -1.2010 6 6 2.9550 4.0289 -0.0002 7 8 3.4088 5.3099 -0.0003 8 6 3.6249 5.9215 -1.2736 9 6 4.1245 7.3295 -1.0762 10 8 4.2805 7.7661 0.0445 11 7 4.3978 8.1036 -2.1451 12 6 4.7587 9.4435 -1.9647 13 6 5.6763 10.0387 -2.8272 14 6 6.0401 11.3643 -2.6581 15 6 5.4977 12.1089 -1.6349 16 6 4.5693 11.5209 -0.7556 17 6 4.0083 12.2791 0.2979 18 1 3.6410 11.7831 1.1841 19 6 3.9290 13.6723 0.1921 20 7 4.0576 14.2479 -0.9757 21 14 3.6394 14.7098 1.7182 22 1 4.9454 15.0786 2.3212 23 1 2.9005 15.9429 1.3455 24 1 2.8421 13.9329 2.7011 25 6 4.1996 10.1760 -0.9342 26 6 2.7232 3.3740 1.2006 27 6 2.2627 2.0715 1.1980 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5137 0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 2.0921 1.5574 -2.1326 34 1 2.9029 3.8815 -2.1370 35 1 4.3658 5.3482 -1.8309 36 1 2.6880 5.9427 -1.8303 37 1 4.3444 7.7318 -3.0395 38 1 6.1069 9.4628 -3.6330 39 1 6.7529 11.8160 -3.3322 40 1 5.7841 13.1423 -1.5072 41 1 4.0030 15.2137 -1.0489 42 1 3.4845 9.7168 -0.2678 43 1 2.9034 3.8816 2.1367 44 1 2.0825 1.5610 2.1326 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180516164.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:55 Heat of formation + Delta-G solvation = -34.358922 kcal Electronic energy + Delta-G solvation = -25399.625981 eV Core-core repulsion = 21667.613163 eV Total energy + Delta-G solvation = -3732.012818 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.54452 -39.57264 -37.98560 -37.00161 -34.50722 -33.81501 -33.08806 -31.31606 -29.87008 -29.83469 -28.66042 -27.14106 -25.30771 -23.88230 -23.16428 -21.72486 -21.03781 -20.80363 -19.68916 -18.46979 -17.83932 -16.89097 -16.39088 -15.91516 -15.80529 -15.51874 -15.05496 -14.68391 -14.61124 -14.31392 -14.22650 -13.84607 -13.64268 -13.42841 -13.15875 -12.90078 -12.79684 -12.58578 -12.26508 -12.08217 -11.67207 -11.45954 -11.29048 -11.24018 -11.13962 -11.01584 -10.99985 -10.91171 -10.46400 -10.17941 -9.68550 -9.45828 -9.21652 -9.09571 -9.01540 -8.25334 -7.47209 -6.96455 -6.72641 -4.34646 1.12585 1.21033 2.46480 2.66092 2.81871 3.09907 3.15184 3.18289 3.30980 3.53185 3.81608 3.97053 4.49338 4.52313 4.62070 4.63244 4.74628 4.85794 4.91542 4.95095 5.04435 5.12898 5.20589 5.30024 5.44822 5.56846 5.64345 5.70085 5.82244 5.87741 6.08377 6.14978 6.21625 6.36124 6.40312 6.54990 6.67718 6.96121 7.01474 7.05481 7.21226 7.25189 7.52790 7.68857 7.93529 8.08024 8.11389 8.22428 8.56519 8.68262 8.92643 8.96746 10.20867 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.020671 B = 0.002115 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.198708 B =13233.750253 C =14243.298823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.079 4.079 3 C -0.126 4.126 4 C -0.077 4.077 5 C -0.209 4.209 6 C 0.129 3.871 7 O -0.286 6.286 8 C 0.044 3.956 9 C 0.505 3.495 10 O -0.492 6.492 11 N -0.664 5.664 12 C 0.151 3.849 13 C -0.260 4.260 14 C -0.092 4.092 15 C -0.170 4.170 16 C 0.119 3.881 17 C -0.457 4.457 18 H 0.079 0.921 19 C 0.075 3.925 20 N -0.795 5.795 21 Si 0.910 3.090 22 H -0.267 1.267 23 H -0.278 1.278 24 H -0.262 1.262 25 C -0.210 4.210 26 C -0.146 4.146 27 C -0.078 4.078 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.123 0.877 34 H 0.128 0.872 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.399 0.601 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.120 0.880 41 H 0.280 0.720 42 H 0.106 0.894 43 H 0.133 0.867 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.365 -22.568 -2.801 23.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 C -0.126 4.126 4 C -0.095 4.095 5 C -0.228 4.228 6 C 0.084 3.916 7 O -0.199 6.199 8 C -0.035 4.035 9 C 0.289 3.711 10 O -0.364 6.364 11 N -0.310 5.310 12 C 0.060 3.940 13 C -0.282 4.282 14 C -0.111 4.111 15 C -0.190 4.190 16 C 0.116 3.884 17 C -0.487 4.487 18 H 0.097 0.903 19 C -0.142 4.142 20 N -0.420 5.420 21 Si 0.734 3.266 22 H -0.192 1.192 23 H -0.203 1.203 24 H -0.186 1.186 25 C -0.232 4.232 26 C -0.164 4.164 27 C -0.096 4.096 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.141 0.859 34 H 0.146 0.854 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.233 0.767 38 H 0.108 0.892 39 H 0.110 0.890 40 H 0.137 0.863 41 H 0.091 0.909 42 H 0.124 0.876 43 H 0.151 0.849 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.260 -21.918 -1.901 22.409 hybrid contribution -0.180 0.337 -0.259 0.462 sum -4.440 -21.581 -2.161 22.138 Atomic orbital electron populations 1.21769 0.94926 1.01528 1.02294 1.20460 0.96019 0.92553 1.02631 1.19796 1.02882 0.96861 0.93081 1.20788 0.97394 0.93711 0.97655 1.21263 1.07590 0.96912 0.97016 1.19109 0.94466 0.83692 0.94372 1.86197 1.80173 1.24062 1.29419 1.22493 1.02259 0.93038 0.85727 1.19942 0.79259 0.86221 0.85693 1.90809 1.48931 1.73353 1.23344 1.43242 1.68612 1.10637 1.08472 1.17389 0.97175 0.80648 0.98833 1.20023 1.06462 0.96733 1.04956 1.20465 0.99266 0.93338 0.98040 1.21359 0.99531 1.00322 0.97760 1.17499 0.89091 0.90278 0.91514 1.19604 1.35164 0.90987 1.02896 0.90279 1.25917 0.92670 0.98694 0.96950 1.69830 1.36048 1.12012 1.24138 0.86286 0.79345 0.78936 0.82021 1.19241 1.20348 1.18557 1.20982 1.05195 0.95538 1.01436 1.20482 1.04334 0.95025 0.96592 1.20831 0.97478 0.93458 0.97793 0.92561 0.92598 0.92521 0.91192 0.91267 0.85917 0.85378 0.89181 0.88992 0.76690 0.89218 0.88956 0.86252 0.90916 0.87628 0.84888 0.85448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.90 37.16 0.37 -0.53 16 2 C -0.08 -0.51 6.06 -27.88 -0.17 -0.68 16 3 C -0.13 -1.11 5.14 -104.60 -0.54 -1.64 16 4 C -0.08 -0.69 9.69 -39.60 -0.38 -1.07 16 5 C -0.21 -2.13 9.04 -39.43 -0.36 -2.48 16 6 C 0.13 1.63 6.69 -39.22 -0.26 1.37 16 7 O -0.29 -4.34 9.67 -39.35 -0.38 -4.72 16 8 C 0.04 0.55 5.22 36.01 0.19 0.74 16 9 C 0.50 9.00 7.63 -10.99 -0.08 8.92 16 10 O -0.49 -11.45 14.25 -14.36 -0.20 -11.65 16 11 N -0.66 -11.46 5.34 -9.91 -0.05 -11.51 16 12 C 0.15 3.39 6.25 -83.77 -0.52 2.87 16 13 C -0.26 -5.67 9.97 -39.10 -0.39 -6.06 16 14 C -0.09 -2.14 10.02 -39.69 -0.40 -2.54 16 15 C -0.17 -4.47 8.69 -38.84 -0.34 -4.80 16 16 C 0.12 3.30 5.57 -106.85 -0.59 2.71 16 17 C -0.46 -12.64 9.05 -37.74 -0.34 -12.98 16 18 H 0.08 2.17 7.90 -52.49 -0.41 1.75 16 19 C 0.08 1.93 5.16 -17.34 -0.09 1.84 16 20 N -0.79 -20.73 10.94 55.55 0.61 -20.12 16 21 Si 0.91 19.25 29.59 -169.99 -5.03 14.22 16 22 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 23 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 24 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 25 C -0.21 -5.48 8.39 -38.68 -0.32 -5.81 16 26 C -0.15 -1.69 9.99 -39.43 -0.39 -2.08 16 27 C -0.08 -0.73 9.69 -39.61 -0.38 -1.12 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 32 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 33 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 34 H 0.13 1.03 6.30 -52.49 -0.33 0.70 16 35 H 0.09 0.84 7.66 -51.93 -0.40 0.45 16 36 H 0.09 0.90 7.66 -51.93 -0.40 0.51 16 37 H 0.40 5.00 8.82 -40.82 -0.36 4.64 16 38 H 0.09 1.66 8.06 -52.48 -0.42 1.24 16 39 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 40 H 0.12 3.21 6.16 -52.49 -0.32 2.89 16 41 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 42 H 0.11 2.85 6.48 -52.49 -0.34 2.51 16 43 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 44 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 LS Contribution 373.42 15.07 5.63 5.63 Total: -1.00 -32.67 373.42 -10.37 -43.04 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -5.92 Total: 8.46 kcal Atomic # 6 Polarization: -18.34 SS G_CDS: -5.01 Total: -23.35 kcal Atomic # 7 Polarization: -32.19 SS G_CDS: 0.55 Total: -31.63 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -0.59 Total: -16.37 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.03 Total: 14.22 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.67 -10.37 -43.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180516164.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.681 kcal (2) G-P(sol) polarization free energy of solvation -32.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds