Wall clock time and date at job start Tue Mar 31 2020 14:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50702 * 109.47172 * 2 1 4 4 C 1.38274 * 119.93832 * 269.72267 * 3 2 1 5 5 C 1.38145 * 120.05025 * 179.72675 * 4 3 2 6 6 C 1.38729 * 119.94630 * 0.56616 * 5 4 3 7 7 O 1.35904 * 120.05903 * 179.68739 * 6 5 4 8 8 C 1.42904 * 116.99472 * 0.02562 * 7 6 5 9 9 C 1.50702 * 109.46638 * 180.02562 * 8 7 6 10 10 O 1.21284 * 120.00089 * 0.02562 * 9 8 7 11 11 N 1.34773 * 119.99569 * 180.02562 * 9 8 7 12 12 C 1.39936 * 120.00029 * 174.89147 * 11 9 8 13 13 C 1.39286 * 119.95173 * 145.78159 * 12 11 9 14 14 C 1.38494 * 120.43161 * 179.97438 * 13 12 11 15 15 C 1.37681 * 120.32130 * 359.97438 * 14 13 12 16 16 C 1.40743 * 119.88430 * 0.02562 * 15 14 13 17 17 C 1.41404 * 120.21120 * 179.97438 * 16 15 14 18 18 H 1.07996 * 120.00392 * 205.17436 * 17 16 15 19 19 C 1.39941 * 119.99781 * 25.18207 * 17 16 15 20 20 N 1.30832 * 119.99567 * 16.79026 * 19 17 16 21 21 Si 1.86796 * 119.99994 * 196.79390 * 19 17 16 22 22 H 1.48494 * 109.47420 * 89.99731 * 21 19 17 23 23 H 1.48502 * 109.46897 * 209.99900 * 21 19 17 24 24 H 1.48504 * 109.47112 * 329.99546 * 21 19 17 25 25 C 1.38243 * 119.94456 * 325.51128 * 12 11 9 26 26 C 1.38733 * 119.88965 * 359.70268 * 6 5 4 27 27 C 1.38147 * 119.94117 * 0.02562 * 26 6 5 28 28 H 1.08998 * 109.46837 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46429 * 60.00723 * 1 2 3 30 30 H 1.08997 * 109.47380 * 300.00527 * 1 2 3 31 31 H 1.09001 * 109.46758 * 119.98882 * 2 1 3 32 32 H 1.08997 * 109.47380 * 239.99473 * 2 1 3 33 33 H 1.07997 * 119.97082 * 359.97438 * 4 3 2 34 34 H 1.07998 * 120.02748 * 180.25224 * 5 4 3 35 35 H 1.09002 * 109.46946 * 300.00165 * 8 7 6 36 36 H 1.09000 * 109.47328 * 60.00355 * 8 7 6 37 37 H 0.97001 * 120.00106 * 354.88857 * 11 9 8 38 38 H 1.08008 * 119.78664 * 359.97438 * 13 12 11 39 39 H 1.08006 * 119.83631 * 179.97438 * 14 13 12 40 40 H 1.07994 * 120.05992 * 180.02562 * 15 14 13 41 41 H 0.97005 * 119.99227 * 180.02562 * 20 19 17 42 42 H 1.07997 * 120.16284 * 359.97438 * 25 12 11 43 43 H 1.08002 * 120.03148 * 179.97438 * 26 6 5 44 44 H 1.08005 * 119.97081 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2679 2.0695 -1.1982 5 6 2.7230 3.3738 -1.2010 6 6 2.9550 4.0289 -0.0002 7 8 3.4088 5.3099 -0.0003 8 6 3.6249 5.9215 -1.2736 9 6 4.1245 7.3295 -1.0762 10 8 4.2805 7.7661 0.0445 11 7 4.3978 8.1036 -2.1451 12 6 4.7587 9.4435 -1.9647 13 6 5.6763 10.0387 -2.8272 14 6 6.0401 11.3643 -2.6581 15 6 5.4977 12.1089 -1.6349 16 6 4.5693 11.5209 -0.7556 17 6 4.0083 12.2791 0.2979 18 1 3.6410 11.7831 1.1841 19 6 3.9290 13.6723 0.1921 20 7 4.0576 14.2479 -0.9757 21 14 3.6394 14.7098 1.7182 22 1 4.9454 15.0786 2.3212 23 1 2.9005 15.9429 1.3455 24 1 2.8421 13.9329 2.7011 25 6 4.1996 10.1760 -0.9342 26 6 2.7232 3.3740 1.2006 27 6 2.2627 2.0715 1.1980 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5137 0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 2.0921 1.5574 -2.1326 34 1 2.9029 3.8815 -2.1370 35 1 4.3658 5.3482 -1.8309 36 1 2.6880 5.9427 -1.8303 37 1 4.3444 7.7318 -3.0395 38 1 6.1069 9.4628 -3.6330 39 1 6.7529 11.8160 -3.3322 40 1 5.7841 13.1423 -1.5072 41 1 4.0030 15.2137 -1.0489 42 1 3.4845 9.7168 -0.2678 43 1 2.9034 3.8816 2.1367 44 1 2.0825 1.5610 2.1326 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180516164.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:54 Heat of formation + Delta-G solvation = -52.378718 kcal Electronic energy + Delta-G solvation = -25400.407378 eV Core-core repulsion = 21667.613163 eV Total energy + Delta-G solvation = -3732.794215 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.64454 -40.83836 -39.19283 -38.49366 -36.26068 -34.90313 -34.44383 -32.07926 -31.77999 -31.11564 -29.67831 -28.43260 -27.26822 -24.52992 -24.09886 -23.19506 -22.72414 -21.74877 -21.23277 -19.66911 -19.30752 -18.29918 -17.52050 -17.30563 -17.06502 -16.61200 -16.48282 -16.40595 -15.72510 -15.39638 -15.34017 -14.91357 -14.75334 -14.60013 -14.28858 -14.14219 -13.97552 -13.70897 -13.55485 -13.35062 -13.07922 -12.95846 -12.84985 -12.79827 -12.20465 -12.08927 -11.96099 -11.87058 -11.82321 -11.62173 -11.54475 -11.20640 -10.93266 -10.72487 -9.95705 -9.42573 -9.05289 -8.80367 -8.64044 -6.39782 0.38846 0.43721 0.79080 0.96609 1.34352 1.45240 1.47654 1.52673 1.68656 2.19312 2.65455 2.71242 2.78289 3.50707 3.71011 3.86809 3.91286 3.93949 4.04292 4.06346 4.29228 4.43682 4.44969 4.52435 4.59561 4.61281 4.67547 4.83755 4.99104 5.03813 5.06753 5.08796 5.13425 5.18284 5.18717 5.29930 5.33509 5.40060 5.44294 5.70470 5.72213 5.80930 5.85810 6.05281 6.07917 6.31009 6.36040 6.57108 6.65792 6.90666 6.97806 7.22286 8.30633 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.020671 B = 0.002115 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.198708 B =13233.750253 C =14243.298823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.078 4.078 3 C -0.125 4.125 4 C -0.080 4.080 5 C -0.208 4.208 6 C 0.101 3.899 7 O -0.326 6.326 8 C 0.054 3.946 9 C 0.500 3.500 10 O -0.556 6.556 11 N -0.648 5.648 12 C 0.157 3.843 13 C -0.246 4.246 14 C -0.091 4.091 15 C -0.196 4.196 16 C 0.087 3.913 17 C -0.503 4.503 18 H 0.060 0.940 19 C 0.038 3.962 20 N -0.820 5.820 21 Si 0.981 3.019 22 H -0.259 1.259 23 H -0.260 1.260 24 H -0.267 1.267 25 C -0.239 4.239 26 C -0.170 4.170 27 C -0.082 4.082 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.151 0.849 34 H 0.153 0.847 35 H 0.132 0.868 36 H 0.126 0.874 37 H 0.427 0.573 38 H 0.138 0.862 39 H 0.126 0.874 40 H 0.105 0.895 41 H 0.290 0.710 42 H 0.080 0.920 43 H 0.120 0.880 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.300 -24.961 -5.250 25.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.115 4.115 3 C -0.125 4.125 4 C -0.097 4.097 5 C -0.226 4.226 6 C 0.056 3.944 7 O -0.239 6.239 8 C -0.023 4.023 9 C 0.287 3.713 10 O -0.433 6.433 11 N -0.297 5.297 12 C 0.064 3.936 13 C -0.267 4.267 14 C -0.110 4.110 15 C -0.216 4.216 16 C 0.084 3.916 17 C -0.533 4.533 18 H 0.078 0.922 19 C -0.177 4.177 20 N -0.446 5.446 21 Si 0.802 3.198 22 H -0.184 1.184 23 H -0.184 1.184 24 H -0.191 1.191 25 C -0.261 4.261 26 C -0.189 4.189 27 C -0.099 4.099 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.168 0.832 34 H 0.171 0.829 35 H 0.150 0.850 36 H 0.144 0.856 37 H 0.266 0.734 38 H 0.155 0.845 39 H 0.144 0.856 40 H 0.123 0.877 41 H 0.101 0.899 42 H 0.098 0.902 43 H 0.138 0.862 44 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.201 -24.359 -4.419 25.110 hybrid contribution -0.194 0.873 0.408 0.983 sum -4.395 -23.485 -4.011 24.227 Atomic orbital electron populations 1.21763 0.94613 1.02286 1.01790 1.20517 0.96158 0.91064 1.03761 1.20168 1.01604 0.97958 0.92779 1.21173 0.96374 0.93356 0.98843 1.21537 1.06813 0.97387 0.96870 1.19340 0.96299 0.83064 0.95690 1.86129 1.81193 1.25664 1.30936 1.22546 1.04741 0.89435 0.85626 1.20995 0.77551 0.88152 0.84572 1.90793 1.51447 1.75095 1.25955 1.43080 1.67837 1.08611 1.10124 1.17472 0.96163 0.82715 0.97265 1.20501 1.04707 0.96391 1.05059 1.20871 0.98970 0.93940 0.97184 1.21321 1.00648 1.00225 0.99357 1.17848 0.90060 0.91298 0.92406 1.19727 1.37826 0.92659 1.03056 0.92191 1.26687 0.91887 0.98978 1.00160 1.69850 1.36166 1.12842 1.25726 0.85226 0.79514 0.77372 0.77696 1.18405 1.18368 1.19105 1.20939 1.06366 0.95775 1.03002 1.20639 1.05690 0.96189 0.96333 1.21066 0.96995 0.92661 0.99218 0.91210 0.92857 0.93303 0.90406 0.89870 0.83153 0.82944 0.85023 0.85629 0.73412 0.84463 0.85617 0.87714 0.89919 0.90174 0.86156 0.83747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.90 71.98 0.71 -0.71 16 2 C -0.08 -0.78 6.06 29.85 0.18 -0.60 16 3 C -0.12 -1.91 5.14 -19.85 -0.10 -2.01 16 4 C -0.08 -1.18 9.69 22.26 0.22 -0.96 16 5 C -0.21 -3.67 9.04 22.37 0.20 -3.47 16 6 C 0.10 2.49 6.69 22.51 0.15 2.64 16 7 O -0.33 -9.92 9.67 -73.43 -0.71 -10.63 16 8 C 0.05 1.25 5.22 71.24 0.37 1.63 16 9 C 0.50 17.70 7.63 87.66 0.67 18.37 16 10 O -0.56 -27.22 14.25 16.00 0.23 -26.99 16 11 N -0.65 -21.27 5.34 -303.66 -1.62 -22.89 16 12 C 0.16 6.99 6.25 38.10 0.24 7.23 16 13 C -0.25 -10.07 9.97 22.58 0.23 -9.84 16 14 C -0.09 -4.11 10.02 22.20 0.22 -3.89 16 15 C -0.20 -10.58 8.69 22.75 0.20 -10.38 16 16 C 0.09 5.07 5.57 -21.31 -0.12 4.95 16 17 C -0.50 -29.81 9.05 23.46 0.21 -29.60 16 18 H 0.06 3.61 7.90 -2.91 -0.02 3.59 16 19 C 0.04 2.03 5.16 85.25 0.44 2.47 16 20 N -0.82 -44.10 10.94 21.83 0.24 -43.86 16 21 Si 0.98 40.84 29.59 68.60 2.03 42.87 16 22 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 23 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 24 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 25 C -0.24 -13.13 8.39 22.85 0.19 -12.94 16 26 C -0.17 -4.04 9.99 22.37 0.22 -3.82 16 27 C -0.08 -1.47 9.69 22.25 0.22 -1.26 16 28 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.08 0.68 8.08 -2.39 -0.02 0.66 16 32 H 0.08 0.63 8.08 -2.39 -0.02 0.61 16 33 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 34 H 0.15 1.81 6.30 -2.91 -0.02 1.79 16 35 H 0.13 1.94 7.66 -2.39 -0.02 1.92 16 36 H 0.13 2.05 7.66 -2.39 -0.02 2.04 16 37 H 0.43 9.08 8.82 -92.71 -0.82 8.27 16 38 H 0.14 4.34 8.06 -2.91 -0.02 4.32 16 39 H 0.13 4.77 8.06 -2.91 -0.02 4.75 16 40 H 0.10 5.87 6.16 -2.91 -0.02 5.85 16 41 H 0.29 13.93 8.30 -92.70 -0.77 13.17 16 42 H 0.08 4.70 6.48 -2.91 -0.02 4.69 16 43 H 0.12 2.99 8.06 -2.91 -0.02 2.97 16 44 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 Total: -1.00 -78.52 373.42 4.82 -73.70 By element: Atomic # 1 Polarization: 29.79 SS G_CDS: 0.21 Total: 29.99 kcal Atomic # 6 Polarization: -46.64 SS G_CDS: 4.45 Total: -42.19 kcal Atomic # 7 Polarization: -65.37 SS G_CDS: -1.38 Total: -66.75 kcal Atomic # 8 Polarization: -37.13 SS G_CDS: -0.48 Total: -37.62 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.87 kcal Total: -78.52 4.82 -73.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180516164.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.322 kcal (2) G-P(sol) polarization free energy of solvation -78.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds