Wall clock time and date at job start Tue Mar 31 2020 13:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38174 * 120.02861 * 2 1 4 4 C 1.38240 * 120.05585 * 180.02562 * 3 2 1 5 5 C 1.38293 * 120.11284 * 0.02562 * 4 3 2 6 6 C 1.38123 * 120.05604 * 359.97438 * 5 4 3 7 7 C 1.38708 * 120.03131 * 180.02562 * 2 1 3 8 8 O 1.35902 * 120.05380 * 0.25240 * 7 2 1 9 9 C 1.42899 * 117.00212 * 174.49047 * 8 7 2 10 10 H 1.08997 * 109.47057 * 324.76235 * 9 8 7 11 11 C 1.53001 * 109.47380 * 84.76185 * 9 8 7 12 12 C 1.50705 * 109.47039 * 204.76560 * 9 8 7 13 13 O 1.21284 * 120.00125 * 359.97438 * 12 9 8 14 14 N 1.34774 * 119.99771 * 179.97438 * 12 9 8 15 15 C 1.39937 * 119.99995 * 184.49842 * 14 12 9 16 16 C 1.39292 * 119.94298 * 323.89214 * 15 14 12 17 17 C 1.38492 * 120.42581 * 179.76432 * 16 15 14 18 18 C 1.37683 * 120.32286 * 0.50777 * 17 16 15 19 19 C 1.40744 * 119.88455 * 359.75211 * 18 17 16 20 20 C 1.41403 * 120.20959 * 180.02562 * 19 18 17 21 21 H 1.07999 * 119.99894 * 208.29327 * 20 19 18 22 22 C 1.39935 * 120.00467 * 28.30087 * 20 19 18 23 23 N 1.30827 * 119.99356 * 10.61176 * 22 20 19 24 24 Si 1.86797 * 120.00269 * 190.61597 * 22 20 19 25 25 H 1.48500 * 109.47020 * 89.99523 * 24 22 20 26 26 H 1.48502 * 109.47067 * 209.99590 * 24 22 20 27 27 H 1.48502 * 109.47015 * 329.99584 * 24 22 20 28 28 C 1.38244 * 119.95125 * 144.16565 * 15 14 12 29 29 H 1.09005 * 109.47338 * 269.99447 * 1 2 3 30 30 H 1.09003 * 109.47495 * 29.99127 * 1 2 3 31 31 H 1.09002 * 109.47440 * 149.99810 * 1 2 3 32 32 H 1.07994 * 119.96886 * 0.03272 * 3 2 1 33 33 H 1.08004 * 119.94465 * 180.02562 * 4 3 2 34 34 H 1.08000 * 119.96999 * 180.02562 * 5 4 3 35 35 H 1.07994 * 120.03146 * 180.02562 * 6 5 4 36 36 H 1.08999 * 109.46886 * 180.02562 * 11 9 8 37 37 H 1.08998 * 109.47135 * 300.00382 * 11 9 8 38 38 H 1.09005 * 109.46741 * 59.99972 * 11 9 8 39 39 H 0.96997 * 120.00392 * 4.49717 * 14 12 9 40 40 H 1.07999 * 119.78843 * 0.02562 * 16 15 14 41 41 H 1.08002 * 119.83863 * 180.25921 * 17 16 15 42 42 H 1.08001 * 120.06044 * 179.76470 * 18 17 16 43 43 H 0.97003 * 119.99972 * 180.02562 * 23 22 20 44 44 H 1.07996 * 120.15606 * 359.95613 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1963 0.0000 4 6 3.5808 1.1969 -0.0005 5 6 4.2752 0.0010 -0.0016 6 6 3.5887 -1.1976 -0.0016 7 6 2.2011 -1.2009 -0.0005 8 8 1.5234 -2.3788 -0.0062 9 6 2.2988 -3.5729 -0.1287 10 1 3.1507 -3.3874 -0.7828 11 6 2.7997 -3.9996 1.2525 12 6 1.4452 -4.6683 -0.7141 13 8 0.2867 -4.4482 -0.9979 14 7 1.9691 -5.8925 -0.9221 15 6 1.2063 -6.8823 -1.5517 16 6 -0.1634 -6.9624 -1.3116 17 6 -0.9288 -7.9349 -1.9331 18 6 -0.3417 -8.8405 -2.7879 19 6 1.0422 -8.7753 -3.0360 20 6 1.6523 -9.7016 -3.9131 21 1 2.6894 -9.9708 -3.7779 22 6 0.9123 -10.2693 -4.9564 23 7 -0.2713 -9.7966 -5.2514 24 14 1.6146 -11.7020 -5.9277 25 1 1.2174 -12.9793 -5.2827 26 1 1.0888 -11.6640 -7.3159 27 1 3.0960 -11.6018 -5.9565 28 6 1.8141 -7.7827 -2.4067 29 1 -0.3634 -0.0001 1.0277 30 1 -0.3634 0.8901 -0.5137 31 1 -0.3634 -0.8900 -0.5139 32 1 1.6584 2.1315 0.0005 33 1 4.1195 2.1331 -0.0001 34 1 5.3552 0.0042 -0.0016 35 1 4.1313 -2.1313 -0.0020 36 1 3.3915 -4.9102 1.1590 37 1 3.4171 -3.2073 1.6759 38 1 1.9477 -4.1851 1.9067 39 1 2.8750 -6.0874 -0.6354 40 1 -0.6324 -6.2589 -0.6396 41 1 -1.9908 -7.9857 -1.7433 42 1 -0.9419 -9.5996 -3.2674 43 1 -0.7845 -10.1903 -5.9743 44 1 2.8767 -7.7236 -2.5906 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180524659.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:52 Heat of formation + Delta-G solvation = -29.097295 kcal Electronic energy + Delta-G solvation = -26214.537641 eV Core-core repulsion = 22482.752985 eV Total energy + Delta-G solvation = -3731.784657 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.80155 -39.59405 -37.78092 -36.92979 -34.50569 -33.41647 -32.99097 -31.68893 -30.11753 -29.84467 -28.13337 -26.90778 -25.30003 -24.84833 -22.89239 -21.68065 -21.26505 -20.88862 -19.61743 -18.33591 -17.75189 -17.12739 -15.94375 -15.84096 -15.77271 -15.48941 -15.01676 -14.85401 -14.57467 -14.25880 -14.10487 -13.54906 -13.29530 -13.27760 -13.00747 -12.91947 -12.62884 -12.34164 -12.29445 -12.20050 -11.93171 -11.68197 -11.48357 -11.28484 -11.19760 -11.13634 -10.96882 -10.92923 -10.48612 -10.21633 -9.60355 -9.40277 -9.27078 -9.02064 -8.93051 -8.26888 -7.46890 -6.98763 -6.68523 -4.39690 1.11847 1.25315 2.45697 2.68149 2.79779 3.07405 3.10171 3.13205 3.28135 3.56315 3.70857 3.94270 4.46342 4.61505 4.63734 4.65711 4.68746 4.82192 4.87810 5.08826 5.10921 5.29315 5.38463 5.45788 5.53069 5.64260 5.64878 5.70485 5.82369 6.12473 6.14638 6.26115 6.28565 6.35557 6.50687 6.59078 6.68639 6.90082 6.95848 7.02716 7.23678 7.25566 7.55534 7.61903 7.95156 8.01680 8.09755 8.26531 8.51166 8.64898 8.88483 8.94240 10.24082 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.023058 B = 0.002342 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.032702 B =11951.210825 C =12275.139832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.113 4.113 3 C -0.085 4.085 4 C -0.158 4.158 5 C -0.087 4.087 6 C -0.210 4.210 7 C 0.132 3.868 8 O -0.279 6.279 9 C 0.067 3.933 10 H 0.098 0.902 11 C -0.176 4.176 12 C 0.510 3.490 13 O -0.498 6.498 14 N -0.661 5.661 15 C 0.146 3.854 16 C -0.220 4.220 17 C -0.099 4.099 18 C -0.159 4.159 19 C 0.119 3.881 20 C -0.465 4.465 21 H 0.076 0.924 22 C 0.073 3.927 23 N -0.802 5.802 24 Si 0.912 3.088 25 H -0.268 1.268 26 H -0.278 1.278 27 H -0.263 1.263 28 C -0.238 4.238 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.127 0.873 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.130 0.870 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.400 0.600 40 H 0.106 0.894 41 H 0.093 0.907 42 H 0.123 0.877 43 H 0.280 0.720 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.217 15.549 10.456 20.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.114 4.114 3 C -0.103 4.103 4 C -0.176 4.176 5 C -0.105 4.105 6 C -0.228 4.228 7 C 0.086 3.914 8 O -0.192 6.192 9 C 0.007 3.993 10 H 0.116 0.884 11 C -0.234 4.234 12 C 0.294 3.706 13 O -0.371 6.371 14 N -0.306 5.306 15 C 0.055 3.945 16 C -0.241 4.241 17 C -0.118 4.118 18 C -0.179 4.179 19 C 0.116 3.884 20 C -0.495 4.495 21 H 0.094 0.906 22 C -0.143 4.143 23 N -0.428 5.428 24 Si 0.737 3.263 25 H -0.194 1.194 26 H -0.203 1.203 27 H -0.188 1.188 28 C -0.259 4.259 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.145 0.855 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.148 0.852 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.234 0.766 40 H 0.124 0.876 41 H 0.111 0.889 42 H 0.140 0.860 43 H 0.091 0.909 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 6.968 15.683 10.085 19.905 hybrid contribution 1.103 -0.714 -0.480 1.399 sum 8.071 14.969 9.605 19.531 Atomic orbital electron populations 1.20655 0.90299 1.03248 1.02378 1.19327 0.96807 0.90210 1.05057 1.20894 0.94135 0.96721 0.98518 1.21027 0.94215 0.98040 1.04330 1.20912 0.99721 0.91844 0.98010 1.21309 0.92997 0.99616 1.08895 1.18921 0.90461 0.85715 0.96295 1.86215 1.34486 1.11242 1.87215 1.22234 0.94047 0.84358 0.98664 0.88413 1.22352 1.02740 1.02771 0.95520 1.19977 0.88241 0.82908 0.79465 1.90753 1.16570 1.81121 1.48645 1.43281 1.17535 1.10424 1.59386 1.17414 0.91202 0.89809 0.96072 1.20470 0.92483 1.03387 1.07778 1.20643 0.97540 0.95855 0.97797 1.21480 0.95974 1.00633 0.99789 1.17393 0.91709 0.89769 0.89492 1.19499 0.98213 1.21460 1.10340 0.90558 1.25881 0.94468 0.96819 0.97182 1.69799 1.10980 1.36243 1.25743 0.86259 0.80155 0.81294 0.78636 1.19366 1.20343 1.18756 1.20756 0.98920 1.00625 1.05646 0.91392 0.91773 0.90436 0.85467 0.86028 0.85880 0.85226 0.90161 0.90720 0.90496 0.76584 0.87643 0.88921 0.85958 0.90949 0.88612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 9.79 36.00 0.35 -0.86 16 2 C -0.11 -1.34 5.89 -104.48 -0.62 -1.96 16 3 C -0.08 -0.82 9.70 -39.60 -0.38 -1.20 16 4 C -0.16 -1.40 10.04 -39.56 -0.40 -1.80 16 5 C -0.09 -0.79 10.04 -39.60 -0.40 -1.19 16 6 C -0.21 -2.20 8.24 -39.43 -0.32 -2.53 16 7 C 0.13 1.68 6.57 -39.22 -0.26 1.43 16 8 O -0.28 -4.12 8.38 -39.34 -0.33 -4.45 16 9 C 0.07 0.86 2.65 -27.88 -0.07 0.79 16 10 H 0.10 1.05 6.32 -51.93 -0.33 0.73 16 11 C -0.18 -1.70 9.06 37.16 0.34 -1.36 16 12 C 0.51 8.95 7.07 -10.98 -0.08 8.87 16 13 O -0.50 -11.08 13.99 -14.35 -0.20 -11.28 16 14 N -0.66 -11.39 5.25 -9.91 -0.05 -11.44 16 15 C 0.15 3.26 6.27 -83.76 -0.53 2.73 16 16 C -0.22 -5.25 8.70 -39.10 -0.34 -5.59 16 17 C -0.10 -2.42 10.02 -39.69 -0.40 -2.82 16 18 C -0.16 -4.17 8.66 -38.84 -0.34 -4.51 16 19 C 0.12 3.15 5.56 -106.85 -0.59 2.55 16 20 C -0.46 -12.15 9.06 -37.74 -0.34 -12.49 16 21 H 0.08 1.90 7.87 -52.49 -0.41 1.48 16 22 C 0.07 1.83 5.26 -17.34 -0.09 1.74 16 23 N -0.80 -20.90 10.80 55.55 0.60 -20.30 16 24 Si 0.91 18.63 29.57 -169.99 -5.03 13.60 16 25 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 26 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 27 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 28 C -0.24 -5.65 9.71 -38.68 -0.38 -6.03 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 31 H 0.08 1.04 7.53 -51.93 -0.39 0.65 16 32 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 34 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 35 H 0.13 1.13 5.42 -52.49 -0.28 0.84 16 36 H 0.08 0.61 7.47 -51.93 -0.39 0.22 16 37 H 0.07 0.61 6.90 -51.93 -0.36 0.25 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.40 5.21 8.12 -40.82 -0.33 4.88 16 40 H 0.11 2.51 6.29 -52.49 -0.33 2.18 16 41 H 0.09 2.05 8.06 -52.49 -0.42 1.62 16 42 H 0.12 3.30 6.17 -52.49 -0.32 2.97 16 43 H 0.28 6.65 8.30 -40.82 -0.34 6.32 16 44 H 0.10 2.08 8.06 -52.49 -0.42 1.65 16 LS Contribution 366.64 15.07 5.53 5.53 Total: -1.00 -31.76 366.64 -9.99 -41.75 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -5.66 Total: 10.83 kcal Atomic # 6 Polarization: -19.40 SS G_CDS: -4.84 Total: -24.24 kcal Atomic # 7 Polarization: -32.29 SS G_CDS: 0.55 Total: -31.74 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -0.53 Total: -15.73 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.76 -9.99 -41.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180524659.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.653 kcal (2) G-P(sol) polarization free energy of solvation -31.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds