Wall clock time and date at job start Tue Mar 31 2020 13:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38174 * 120.02861 * 2 1 4 4 C 1.38240 * 120.05585 * 180.02562 * 3 2 1 5 5 C 1.38293 * 120.11284 * 0.02562 * 4 3 2 6 6 C 1.38123 * 120.05604 * 359.97438 * 5 4 3 7 7 C 1.38708 * 120.03131 * 180.02562 * 2 1 3 8 8 O 1.35902 * 120.05380 * 0.25240 * 7 2 1 9 9 C 1.42899 * 117.00212 * 174.49047 * 8 7 2 10 10 H 1.08997 * 109.47057 * 324.76235 * 9 8 7 11 11 C 1.53001 * 109.47380 * 84.76185 * 9 8 7 12 12 C 1.50705 * 109.47039 * 204.76560 * 9 8 7 13 13 O 1.21284 * 120.00125 * 359.97438 * 12 9 8 14 14 N 1.34774 * 119.99771 * 179.97438 * 12 9 8 15 15 C 1.39937 * 119.99995 * 184.49842 * 14 12 9 16 16 C 1.39292 * 119.94298 * 323.89214 * 15 14 12 17 17 C 1.38492 * 120.42581 * 179.76432 * 16 15 14 18 18 C 1.37683 * 120.32286 * 0.50777 * 17 16 15 19 19 C 1.40744 * 119.88455 * 359.75211 * 18 17 16 20 20 C 1.41403 * 120.20959 * 180.02562 * 19 18 17 21 21 H 1.07999 * 119.99894 * 208.29327 * 20 19 18 22 22 C 1.39935 * 120.00467 * 28.30087 * 20 19 18 23 23 N 1.30827 * 119.99356 * 10.61176 * 22 20 19 24 24 Si 1.86797 * 120.00269 * 190.61597 * 22 20 19 25 25 H 1.48500 * 109.47020 * 89.99523 * 24 22 20 26 26 H 1.48502 * 109.47067 * 209.99590 * 24 22 20 27 27 H 1.48502 * 109.47015 * 329.99584 * 24 22 20 28 28 C 1.38244 * 119.95125 * 144.16565 * 15 14 12 29 29 H 1.09005 * 109.47338 * 269.99447 * 1 2 3 30 30 H 1.09003 * 109.47495 * 29.99127 * 1 2 3 31 31 H 1.09002 * 109.47440 * 149.99810 * 1 2 3 32 32 H 1.07994 * 119.96886 * 0.03272 * 3 2 1 33 33 H 1.08004 * 119.94465 * 180.02562 * 4 3 2 34 34 H 1.08000 * 119.96999 * 180.02562 * 5 4 3 35 35 H 1.07994 * 120.03146 * 180.02562 * 6 5 4 36 36 H 1.08999 * 109.46886 * 180.02562 * 11 9 8 37 37 H 1.08998 * 109.47135 * 300.00382 * 11 9 8 38 38 H 1.09005 * 109.46741 * 59.99972 * 11 9 8 39 39 H 0.96997 * 120.00392 * 4.49717 * 14 12 9 40 40 H 1.07999 * 119.78843 * 0.02562 * 16 15 14 41 41 H 1.08002 * 119.83863 * 180.25921 * 17 16 15 42 42 H 1.08001 * 120.06044 * 179.76470 * 18 17 16 43 43 H 0.97003 * 119.99972 * 180.02562 * 23 22 20 44 44 H 1.07996 * 120.15606 * 359.95613 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1963 0.0000 4 6 3.5808 1.1969 -0.0005 5 6 4.2752 0.0010 -0.0016 6 6 3.5887 -1.1976 -0.0016 7 6 2.2011 -1.2009 -0.0005 8 8 1.5234 -2.3788 -0.0062 9 6 2.2988 -3.5729 -0.1287 10 1 3.1507 -3.3874 -0.7828 11 6 2.7997 -3.9996 1.2525 12 6 1.4452 -4.6683 -0.7141 13 8 0.2867 -4.4482 -0.9979 14 7 1.9691 -5.8925 -0.9221 15 6 1.2063 -6.8823 -1.5517 16 6 -0.1634 -6.9624 -1.3116 17 6 -0.9288 -7.9349 -1.9331 18 6 -0.3417 -8.8405 -2.7879 19 6 1.0422 -8.7753 -3.0360 20 6 1.6523 -9.7016 -3.9131 21 1 2.6894 -9.9708 -3.7779 22 6 0.9123 -10.2693 -4.9564 23 7 -0.2713 -9.7966 -5.2514 24 14 1.6146 -11.7020 -5.9277 25 1 1.2174 -12.9793 -5.2827 26 1 1.0888 -11.6640 -7.3159 27 1 3.0960 -11.6018 -5.9565 28 6 1.8141 -7.7827 -2.4067 29 1 -0.3634 -0.0001 1.0277 30 1 -0.3634 0.8901 -0.5137 31 1 -0.3634 -0.8900 -0.5139 32 1 1.6584 2.1315 0.0005 33 1 4.1195 2.1331 -0.0001 34 1 5.3552 0.0042 -0.0016 35 1 4.1313 -2.1313 -0.0020 36 1 3.3915 -4.9102 1.1590 37 1 3.4171 -3.2073 1.6759 38 1 1.9477 -4.1851 1.9067 39 1 2.8750 -6.0874 -0.6354 40 1 -0.6324 -6.2589 -0.6396 41 1 -1.9908 -7.9857 -1.7433 42 1 -0.9419 -9.5996 -3.2674 43 1 -0.7845 -10.1903 -5.9743 44 1 2.8767 -7.7236 -2.5906 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180524659.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:51 Heat of formation + Delta-G solvation = -45.692644 kcal Electronic energy + Delta-G solvation = -26215.257270 eV Core-core repulsion = 22482.752985 eV Total energy + Delta-G solvation = -3732.504285 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.89245 -40.86639 -39.17012 -38.25492 -36.20505 -35.03132 -33.97576 -32.72030 -31.78136 -30.89700 -29.83055 -27.71557 -27.20904 -25.90612 -23.98986 -22.95050 -22.55505 -22.42570 -21.11533 -19.56911 -19.11238 -18.51211 -17.39828 -17.04769 -16.88768 -16.66692 -16.46971 -16.38502 -15.79444 -15.50409 -15.24892 -14.94305 -14.64173 -14.33864 -14.17245 -14.07975 -14.02237 -13.58221 -13.44866 -13.16292 -13.06838 -12.98894 -12.91422 -12.78482 -12.75738 -12.29382 -12.22175 -12.08423 -11.94944 -11.70411 -11.45288 -11.17725 -10.97822 -10.63323 -9.75461 -9.41445 -9.09840 -8.82841 -8.56194 -6.38435 0.38236 0.47856 0.79176 0.94875 1.40498 1.47314 1.53292 1.54582 1.67037 2.22605 2.55684 2.76869 2.81746 3.42696 3.65014 3.68911 3.83153 3.87506 3.94145 4.21229 4.32925 4.39917 4.42296 4.59258 4.62199 4.65145 4.70001 4.75508 4.76599 4.97440 4.98074 5.00506 5.07161 5.09915 5.18318 5.30183 5.33405 5.41197 5.52850 5.61244 5.70285 5.79224 5.87612 6.07591 6.09762 6.24873 6.39211 6.55583 6.67421 6.92681 6.96246 7.17089 8.38188 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.023058 B = 0.002342 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.032702 B =11951.210825 C =12275.139832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.139 4.139 3 C -0.088 4.088 4 C -0.156 4.156 5 C -0.088 4.088 6 C -0.214 4.214 7 C 0.101 3.899 8 O -0.310 6.310 9 C 0.076 3.924 10 H 0.125 0.875 11 C -0.169 4.169 12 C 0.507 3.493 13 O -0.552 6.552 14 N -0.648 5.648 15 C 0.157 3.843 16 C -0.235 4.235 17 C -0.103 4.103 18 C -0.187 4.187 19 C 0.091 3.909 20 C -0.493 4.493 21 H 0.083 0.917 22 C 0.029 3.971 23 N -0.836 5.836 24 Si 0.988 3.012 25 H -0.262 1.262 26 H -0.273 1.273 27 H -0.255 1.255 28 C -0.244 4.244 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.044 0.956 32 H 0.149 0.851 33 H 0.150 0.850 34 H 0.152 0.848 35 H 0.148 0.852 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.061 0.939 39 H 0.423 0.577 40 H 0.103 0.897 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.286 0.714 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.438 16.752 10.878 23.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.140 4.140 3 C -0.106 4.106 4 C -0.174 4.174 5 C -0.106 4.106 6 C -0.232 4.232 7 C 0.057 3.943 8 O -0.224 6.224 9 C 0.017 3.983 10 H 0.142 0.858 11 C -0.227 4.227 12 C 0.294 3.706 13 O -0.428 6.428 14 N -0.295 5.295 15 C 0.065 3.935 16 C -0.256 4.256 17 C -0.122 4.122 18 C -0.206 4.206 19 C 0.088 3.912 20 C -0.523 4.523 21 H 0.101 0.899 22 C -0.185 4.185 23 N -0.462 5.462 24 Si 0.809 3.191 25 H -0.187 1.187 26 H -0.197 1.197 27 H -0.178 1.178 28 C -0.265 4.265 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.063 0.937 32 H 0.166 0.834 33 H 0.168 0.832 34 H 0.170 0.830 35 H 0.165 0.835 36 H 0.123 0.877 37 H 0.114 0.886 38 H 0.080 0.920 39 H 0.262 0.738 40 H 0.121 0.879 41 H 0.125 0.875 42 H 0.124 0.876 43 H 0.097 0.903 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 10.235 16.907 10.544 22.400 hybrid contribution 0.100 -0.916 -0.560 1.078 sum 10.335 15.991 9.984 21.499 Atomic orbital electron populations 1.20596 0.90765 1.02446 1.02388 1.19592 0.96964 0.91088 1.06306 1.21191 0.94901 0.96680 0.97785 1.21441 0.93978 0.99330 1.02659 1.21321 1.01246 0.91315 0.96722 1.21556 0.92041 1.01148 1.08457 1.19224 0.91659 0.85095 0.98361 1.86168 1.36016 1.12252 1.87948 1.22244 0.92950 0.82492 1.00636 0.85815 1.22370 1.02639 1.04609 0.93050 1.20933 0.88064 0.83558 0.78068 1.90729 1.19244 1.82034 1.50788 1.43146 1.18179 1.09593 1.58605 1.17415 0.91066 0.90002 0.95051 1.20591 0.93535 1.03270 1.08163 1.20840 0.98493 0.95559 0.97297 1.21407 0.96365 1.01512 1.01363 1.17791 0.92176 0.90883 0.90306 1.19815 0.98864 1.22513 1.11129 0.89869 1.26827 0.94590 0.99148 0.97916 1.69886 1.12327 1.37564 1.26461 0.85107 0.79630 0.77386 0.76975 1.18683 1.19736 1.17832 1.20938 0.99814 1.00281 1.05484 0.91049 0.89973 0.93702 0.83366 0.83240 0.83020 0.83492 0.87664 0.88589 0.91989 0.73830 0.87907 0.87503 0.87555 0.90339 0.86537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.42 9.79 71.23 0.70 -1.72 16 2 C -0.14 -3.22 5.89 -19.77 -0.12 -3.33 16 3 C -0.09 -1.51 9.70 22.26 0.22 -1.30 16 4 C -0.16 -2.25 10.04 22.28 0.22 -2.02 16 5 C -0.09 -1.30 10.04 22.26 0.22 -1.07 16 6 C -0.21 -3.94 8.24 22.37 0.18 -3.76 16 7 C 0.10 2.51 6.57 22.51 0.15 2.66 16 8 O -0.31 -9.20 8.38 -73.41 -0.61 -9.82 16 9 C 0.08 1.86 2.65 29.85 0.08 1.94 16 10 H 0.12 2.35 6.32 -2.39 -0.02 2.33 16 11 C -0.17 -2.87 9.06 71.98 0.65 -2.22 16 12 C 0.51 17.68 7.07 87.66 0.62 18.30 16 13 O -0.55 -25.35 13.99 15.99 0.22 -25.13 16 14 N -0.65 -21.67 5.25 -303.65 -1.59 -23.27 16 15 C 0.16 7.04 6.27 38.10 0.24 7.28 16 16 C -0.23 -11.49 8.70 22.58 0.20 -11.29 16 17 C -0.10 -5.22 10.02 22.20 0.22 -4.99 16 18 C -0.19 -10.19 8.66 22.75 0.20 -9.99 16 19 C 0.09 4.94 5.56 -21.31 -0.12 4.82 16 20 C -0.49 -26.13 9.06 23.46 0.21 -25.92 16 21 H 0.08 4.13 7.87 -2.91 -0.02 4.11 16 22 C 0.03 1.44 5.26 85.25 0.45 1.89 16 23 N -0.84 -44.65 10.80 21.82 0.24 -44.41 16 24 Si 0.99 38.01 29.57 68.60 2.03 40.04 16 25 H -0.26 -9.74 7.11 99.48 0.71 -9.04 16 26 H -0.27 -10.13 7.11 99.48 0.71 -9.43 16 27 H -0.25 -9.36 7.11 99.48 0.71 -8.65 16 28 C -0.24 -11.59 9.71 22.85 0.22 -11.37 16 29 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 30 H 0.08 1.49 8.09 -2.39 -0.02 1.47 16 31 H 0.04 1.30 7.53 -2.39 -0.02 1.28 16 32 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 33 H 0.15 1.29 8.06 -2.91 -0.02 1.26 16 34 H 0.15 1.32 8.06 -2.91 -0.02 1.30 16 35 H 0.15 2.03 5.42 -2.91 -0.02 2.02 16 36 H 0.10 1.23 7.47 -2.39 -0.02 1.21 16 37 H 0.10 1.26 6.90 -2.39 -0.02 1.24 16 38 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 39 H 0.42 10.01 8.12 -92.71 -0.75 9.26 16 40 H 0.10 5.07 6.29 -2.91 -0.02 5.05 16 41 H 0.11 4.91 8.06 -2.91 -0.02 4.89 16 42 H 0.11 6.04 6.17 -2.91 -0.02 6.03 16 43 H 0.29 13.89 8.30 -92.71 -0.77 13.12 16 44 H 0.12 4.93 8.06 -2.91 -0.02 4.91 16 Total: -1.00 -72.92 366.64 5.11 -67.81 By element: Atomic # 1 Polarization: 36.60 SS G_CDS: 0.28 Total: 36.88 kcal Atomic # 6 Polarization: -46.65 SS G_CDS: 4.55 Total: -42.10 kcal Atomic # 7 Polarization: -66.32 SS G_CDS: -1.36 Total: -67.68 kcal Atomic # 8 Polarization: -34.56 SS G_CDS: -0.39 Total: -34.95 kcal Atomic # 14 Polarization: 38.01 SS G_CDS: 2.03 Total: 40.04 kcal Total: -72.92 5.11 -67.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180524659.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.118 kcal (2) G-P(sol) polarization free energy of solvation -72.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds