Wall clock time and date at job start Tue Mar 31 2020 13:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38266 * 119.97037 * 2 1 4 4 C 1.38261 * 120.11031 * 180.02562 * 3 2 1 5 5 C 1.50698 * 119.97594 * 180.02562 * 4 3 2 6 6 C 1.38146 * 120.05830 * 359.97438 * 4 3 2 7 7 C 1.38737 * 119.94012 * 0.02562 * 6 4 3 8 8 O 1.35903 * 120.05488 * 180.02562 * 7 6 4 9 9 C 1.42894 * 116.99930 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.47333 * 180.02562 * 9 8 7 11 11 O 1.21287 * 119.99875 * 359.97438 * 10 9 8 12 12 N 1.34774 * 120.00125 * 180.02562 * 10 9 8 13 13 C 1.39941 * 119.99922 * 174.89287 * 12 10 9 14 14 C 1.39284 * 119.95038 * 145.78187 * 13 12 10 15 15 C 1.38484 * 120.43123 * 179.97438 * 14 13 12 16 16 C 1.37686 * 120.31983 * 359.97438 * 15 14 13 17 17 C 1.40735 * 119.88742 * 0.02562 * 16 15 14 18 18 C 1.41410 * 120.21384 * 179.97438 * 17 16 15 19 19 H 1.07993 * 120.00265 * 205.17328 * 18 17 16 20 20 C 1.39937 * 119.99774 * 25.17005 * 18 17 16 21 21 N 1.30824 * 119.99867 * 16.80741 * 20 18 17 22 22 Si 1.86796 * 119.99954 * 196.80730 * 20 18 17 23 23 H 1.48507 * 109.46940 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47329 * 119.99821 * 22 20 18 25 25 H 1.48502 * 109.47145 * 240.00099 * 22 20 18 26 26 C 1.38250 * 119.94344 * 325.50540 * 13 12 10 27 27 C 1.38141 * 119.97197 * 180.23436 * 2 1 3 28 28 H 1.08997 * 109.46808 * 89.99909 * 1 2 3 29 29 H 1.08999 * 109.46935 * 209.99974 * 1 2 3 30 30 H 1.09007 * 109.46912 * 330.00066 * 1 2 3 31 31 H 1.07994 * 119.94387 * 359.97302 * 3 2 1 32 32 H 1.09003 * 109.47261 * 269.97995 * 5 4 3 33 33 H 1.09004 * 109.46812 * 29.97371 * 5 4 3 34 34 H 1.08992 * 109.47612 * 149.97501 * 5 4 3 35 35 H 1.07998 * 120.03498 * 179.97438 * 6 4 3 36 36 H 1.09000 * 109.47600 * 299.99884 * 9 8 7 37 37 H 1.09001 * 109.47435 * 59.99856 * 9 8 7 38 38 H 0.96996 * 120.00097 * 354.88766 * 12 10 9 39 39 H 1.07999 * 119.78765 * 359.97438 * 14 13 12 40 40 H 1.08001 * 119.84199 * 180.02562 * 15 14 13 41 41 H 1.08001 * 120.05682 * 180.02562 * 16 15 14 42 42 H 0.97003 * 119.99758 * 179.97438 * 21 20 18 43 43 H 1.07999 * 120.15874 * 0.02562 * 26 13 12 44 44 H 1.08003 * 120.02689 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1978 1.1978 0.0000 4 6 3.5804 1.2012 -0.0005 5 6 4.3301 2.5084 0.0001 6 6 4.2752 0.0072 -0.0005 7 6 3.5845 -1.1960 -0.0005 8 8 4.2657 -2.3720 0.0000 9 6 3.4892 -3.5715 -0.0006 10 6 4.4089 -4.7653 0.0007 11 8 5.6111 -4.6047 0.0016 12 7 3.8955 -6.0115 -0.0001 13 6 4.7453 -7.1182 -0.1067 14 6 4.4336 -8.3010 0.5595 15 6 5.2672 -9.4024 0.4605 16 6 6.4140 -9.3402 -0.2989 17 6 6.7419 -8.1518 -0.9778 18 6 7.9183 -8.0801 -1.7592 19 1 8.3892 -7.1252 -1.9398 20 6 8.4722 -9.2465 -2.2985 21 7 7.7555 -10.3387 -2.3697 22 14 10.2349 -9.2441 -2.9167 23 1 10.8246 -7.8946 -2.7255 24 1 11.0275 -10.2434 -2.1563 25 1 10.2537 -9.5920 -4.3602 26 6 5.8899 -7.0376 -0.8779 27 6 2.1972 -1.1967 -0.0049 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8901 0.5139 31 1 1.6564 2.1322 -0.0004 32 1 4.5108 2.8241 -1.0275 33 1 3.7388 3.2661 0.5142 34 1 5.2829 2.3807 0.5138 35 1 5.3552 0.0103 -0.0014 36 1 2.8597 -3.5974 0.8889 37 1 2.8610 -3.5973 -0.8911 38 1 2.9371 -6.1412 0.0733 39 1 3.5361 -8.3596 1.1573 40 1 5.0161 -10.3149 0.9808 41 1 7.0608 -10.2019 -0.3735 42 1 8.1394 -11.1471 -2.7439 43 1 6.1303 -6.1222 -1.3981 44 1 1.6571 -2.1320 -0.0091 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180540162.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:53 Heat of formation + Delta-G solvation = -35.584144 kcal Electronic energy + Delta-G solvation = -25587.461802 eV Core-core repulsion = 21855.395855 eV Total energy + Delta-G solvation = -3732.065948 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.57757 -39.59178 -37.95028 -36.97891 -34.49813 -33.80721 -33.08698 -31.35678 -29.84040 -29.43085 -27.61446 -27.43054 -26.57649 -25.30270 -22.30884 -21.69540 -21.02730 -20.72159 -19.64454 -17.93410 -17.76705 -16.88472 -16.39414 -16.23104 -15.80818 -15.50024 -15.04766 -14.65110 -14.44398 -14.11869 -13.94520 -13.89408 -13.49571 -13.29155 -13.09840 -12.95004 -12.84298 -12.70483 -12.24191 -12.05842 -12.00033 -11.68655 -11.66336 -11.22701 -11.12402 -11.09871 -10.92437 -10.89530 -10.45622 -10.17577 -9.68990 -9.45328 -9.09278 -9.01340 -8.85003 -8.32541 -7.46925 -6.96247 -6.72561 -4.34374 1.09338 1.25430 2.46600 2.65837 2.81082 3.10451 3.16880 3.18259 3.30740 3.50735 3.81247 3.97361 4.44735 4.52464 4.63230 4.71614 4.84115 4.92002 4.95838 4.99247 5.08753 5.10161 5.28132 5.34249 5.36441 5.44620 5.57605 5.68174 5.70560 5.92180 6.12148 6.21800 6.27788 6.36350 6.39530 6.57336 6.68075 6.96527 7.01678 7.05631 7.22471 7.25889 7.53077 7.69114 7.93709 8.08394 8.11635 8.22632 8.56849 8.68564 8.92920 8.96949 10.20939 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.017950 B = 0.002310 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.544988 B =12116.508046 C =13348.424349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.045 4.045 3 C -0.163 4.163 4 C -0.044 4.044 5 C -0.115 4.115 6 C -0.156 4.156 7 C 0.141 3.859 8 O -0.286 6.286 9 C 0.044 3.956 10 C 0.505 3.495 11 O -0.492 6.492 12 N -0.664 5.664 13 C 0.151 3.849 14 C -0.260 4.260 15 C -0.092 4.092 16 C -0.171 4.171 17 C 0.119 3.881 18 C -0.456 4.456 19 H 0.079 0.921 20 C 0.075 3.925 21 N -0.795 5.795 22 Si 0.908 3.092 23 H -0.260 1.260 24 H -0.272 1.272 25 H -0.275 1.275 26 C -0.210 4.210 27 C -0.219 4.219 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.121 0.879 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.132 0.868 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.399 0.601 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.120 0.880 42 H 0.279 0.721 43 H 0.106 0.894 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.520 17.754 3.734 22.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.045 4.045 3 C -0.181 4.181 4 C -0.044 4.044 5 C -0.171 4.171 6 C -0.175 4.175 7 C 0.095 3.905 8 O -0.198 6.198 9 C -0.035 4.035 10 C 0.289 3.711 11 O -0.364 6.364 12 N -0.310 5.310 13 C 0.060 3.940 14 C -0.282 4.282 15 C -0.111 4.111 16 C -0.190 4.190 17 C 0.116 3.884 18 C -0.486 4.486 19 H 0.097 0.903 20 C -0.142 4.142 21 N -0.420 5.420 22 Si 0.733 3.267 23 H -0.183 1.183 24 H -0.197 1.197 25 H -0.200 1.200 26 C -0.232 4.232 27 C -0.238 4.238 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.139 0.861 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.150 0.850 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.233 0.767 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.138 0.862 42 H 0.090 0.910 43 H 0.124 0.876 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -12.413 17.646 3.626 21.878 hybrid contribution -0.101 -0.365 -0.300 0.483 sum -12.514 17.282 3.326 21.594 Atomic orbital electron populations 1.20817 0.91003 1.02872 1.02508 1.19661 0.95918 0.92430 0.96464 1.20781 0.93402 0.97466 1.06449 1.19673 0.93601 0.94550 0.96621 1.20809 1.00093 0.93601 1.02619 1.20314 1.00569 0.89111 1.07469 1.19039 0.90463 0.85853 0.95102 1.86193 1.34126 1.11284 1.88162 1.22490 0.93885 0.83540 1.03584 1.19943 0.89271 0.83679 0.78214 1.90809 1.14823 1.85161 1.45642 1.43241 1.10077 1.04548 1.73097 1.17388 0.92840 0.85361 0.98417 1.20019 1.03749 0.94520 1.09886 1.20465 0.95493 0.96014 0.99140 1.21363 0.98049 0.99854 0.99761 1.17497 0.91152 0.90344 0.89375 1.19628 1.07491 0.94210 1.27274 0.90258 1.25913 0.99331 0.94861 0.94115 1.69831 1.36368 1.01965 1.33866 0.86258 0.82211 0.79672 0.78601 1.18308 1.19686 1.20013 1.20990 0.96431 1.00556 1.05197 1.21111 0.92798 0.99013 1.10830 0.90921 0.91442 0.91375 0.86074 0.90834 0.91360 0.91185 0.84993 0.89184 0.88991 0.76693 0.89217 0.88951 0.86243 0.90970 0.87619 0.85450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.75 10.01 36.01 0.36 -0.39 16 2 C -0.04 -0.42 5.88 -104.64 -0.62 -1.04 16 3 C -0.16 -1.51 9.35 -39.56 -0.37 -1.88 16 4 C -0.04 -0.44 5.88 -104.65 -0.62 -1.06 16 5 C -0.11 -0.82 10.01 36.00 0.36 -0.46 16 6 C -0.16 -1.90 9.64 -39.43 -0.38 -2.28 16 7 C 0.14 1.85 6.69 -39.22 -0.26 1.58 16 8 O -0.29 -4.41 9.67 -39.34 -0.38 -4.79 16 9 C 0.04 0.56 5.22 36.01 0.19 0.75 16 10 C 0.50 9.07 7.63 -10.99 -0.08 8.98 16 11 O -0.49 -11.51 14.25 -14.36 -0.20 -11.71 16 12 N -0.66 -11.52 5.34 -9.91 -0.05 -11.57 16 13 C 0.15 3.41 6.25 -83.76 -0.52 2.89 16 14 C -0.26 -5.68 9.97 -39.10 -0.39 -6.07 16 15 C -0.09 -2.14 10.02 -39.69 -0.40 -2.54 16 16 C -0.17 -4.49 8.69 -38.84 -0.34 -4.83 16 17 C 0.12 3.31 5.57 -106.85 -0.59 2.71 16 18 C -0.46 -12.65 9.05 -37.74 -0.34 -12.99 16 19 H 0.08 2.18 7.90 -52.49 -0.41 1.77 16 20 C 0.08 1.93 5.16 -17.34 -0.09 1.84 16 21 N -0.79 -20.74 10.94 55.55 0.61 -20.14 16 22 Si 0.91 19.24 29.59 -169.99 -5.03 14.21 16 23 H -0.26 -5.53 7.11 56.52 0.40 -5.12 16 24 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 25 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 26 C -0.21 -5.50 8.39 -38.68 -0.32 -5.83 16 27 C -0.22 -2.34 8.69 -39.44 -0.34 -2.68 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 30 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 31 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 34 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 35 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 36 H 0.09 0.87 7.67 -51.93 -0.40 0.47 16 37 H 0.09 0.93 7.65 -51.93 -0.40 0.53 16 38 H 0.40 5.04 8.82 -40.82 -0.36 4.68 16 39 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 40 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 41 H 0.12 3.22 6.16 -52.49 -0.32 2.90 16 42 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 43 H 0.11 2.86 6.48 -52.49 -0.34 2.52 16 44 H 0.13 1.10 6.30 -52.48 -0.33 0.77 16 LS Contribution 373.34 15.07 5.63 5.63 Total: -1.00 -32.98 373.34 -10.11 -43.08 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -5.92 Total: 8.56 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: -4.76 Total: -23.28 kcal Atomic # 7 Polarization: -32.26 SS G_CDS: 0.55 Total: -31.71 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -0.59 Total: -16.50 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.03 Total: 14.21 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.98 -10.11 -43.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180540162.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.500 kcal (2) G-P(sol) polarization free energy of solvation -32.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds