Wall clock time and date at job start Tue Mar 31 2020 13:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38266 * 119.97037 * 2 1 4 4 C 1.38261 * 120.11031 * 180.02562 * 3 2 1 5 5 C 1.50698 * 119.97594 * 180.02562 * 4 3 2 6 6 C 1.38146 * 120.05830 * 359.97438 * 4 3 2 7 7 C 1.38737 * 119.94012 * 0.02562 * 6 4 3 8 8 O 1.35903 * 120.05488 * 180.02562 * 7 6 4 9 9 C 1.42894 * 116.99930 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.47333 * 180.02562 * 9 8 7 11 11 O 1.21287 * 119.99875 * 359.97438 * 10 9 8 12 12 N 1.34774 * 120.00125 * 180.02562 * 10 9 8 13 13 C 1.39941 * 119.99922 * 174.89287 * 12 10 9 14 14 C 1.39284 * 119.95038 * 145.78187 * 13 12 10 15 15 C 1.38484 * 120.43123 * 179.97438 * 14 13 12 16 16 C 1.37686 * 120.31983 * 359.97438 * 15 14 13 17 17 C 1.40735 * 119.88742 * 0.02562 * 16 15 14 18 18 C 1.41410 * 120.21384 * 179.97438 * 17 16 15 19 19 H 1.07993 * 120.00265 * 205.17328 * 18 17 16 20 20 C 1.39937 * 119.99774 * 25.17005 * 18 17 16 21 21 N 1.30824 * 119.99867 * 16.80741 * 20 18 17 22 22 Si 1.86796 * 119.99954 * 196.80730 * 20 18 17 23 23 H 1.48507 * 109.46940 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47329 * 119.99821 * 22 20 18 25 25 H 1.48502 * 109.47145 * 240.00099 * 22 20 18 26 26 C 1.38250 * 119.94344 * 325.50540 * 13 12 10 27 27 C 1.38141 * 119.97197 * 180.23436 * 2 1 3 28 28 H 1.08997 * 109.46808 * 89.99909 * 1 2 3 29 29 H 1.08999 * 109.46935 * 209.99974 * 1 2 3 30 30 H 1.09007 * 109.46912 * 330.00066 * 1 2 3 31 31 H 1.07994 * 119.94387 * 359.97302 * 3 2 1 32 32 H 1.09003 * 109.47261 * 269.97995 * 5 4 3 33 33 H 1.09004 * 109.46812 * 29.97371 * 5 4 3 34 34 H 1.08992 * 109.47612 * 149.97501 * 5 4 3 35 35 H 1.07998 * 120.03498 * 179.97438 * 6 4 3 36 36 H 1.09000 * 109.47600 * 299.99884 * 9 8 7 37 37 H 1.09001 * 109.47435 * 59.99856 * 9 8 7 38 38 H 0.96996 * 120.00097 * 354.88766 * 12 10 9 39 39 H 1.07999 * 119.78765 * 359.97438 * 14 13 12 40 40 H 1.08001 * 119.84199 * 180.02562 * 15 14 13 41 41 H 1.08001 * 120.05682 * 180.02562 * 16 15 14 42 42 H 0.97003 * 119.99758 * 179.97438 * 21 20 18 43 43 H 1.07999 * 120.15874 * 0.02562 * 26 13 12 44 44 H 1.08003 * 120.02689 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1978 1.1978 0.0000 4 6 3.5804 1.2012 -0.0005 5 6 4.3301 2.5084 0.0001 6 6 4.2752 0.0072 -0.0005 7 6 3.5845 -1.1960 -0.0005 8 8 4.2657 -2.3720 0.0000 9 6 3.4892 -3.5715 -0.0006 10 6 4.4089 -4.7653 0.0007 11 8 5.6111 -4.6047 0.0016 12 7 3.8955 -6.0115 -0.0001 13 6 4.7453 -7.1182 -0.1067 14 6 4.4336 -8.3010 0.5595 15 6 5.2672 -9.4024 0.4605 16 6 6.4140 -9.3402 -0.2989 17 6 6.7419 -8.1518 -0.9778 18 6 7.9183 -8.0801 -1.7592 19 1 8.3892 -7.1252 -1.9398 20 6 8.4722 -9.2465 -2.2985 21 7 7.7555 -10.3387 -2.3697 22 14 10.2349 -9.2441 -2.9167 23 1 10.8246 -7.8946 -2.7255 24 1 11.0275 -10.2434 -2.1563 25 1 10.2537 -9.5920 -4.3602 26 6 5.8899 -7.0376 -0.8779 27 6 2.1972 -1.1967 -0.0049 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8901 0.5139 31 1 1.6564 2.1322 -0.0004 32 1 4.5108 2.8241 -1.0275 33 1 3.7388 3.2661 0.5142 34 1 5.2829 2.3807 0.5138 35 1 5.3552 0.0103 -0.0014 36 1 2.8597 -3.5974 0.8889 37 1 2.8610 -3.5973 -0.8911 38 1 2.9371 -6.1412 0.0733 39 1 3.5361 -8.3596 1.1573 40 1 5.0161 -10.3149 0.9808 41 1 7.0608 -10.2019 -0.3735 42 1 8.1394 -11.1471 -2.7439 43 1 6.1303 -6.1222 -1.3981 44 1 1.6571 -2.1320 -0.0091 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180540162.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:52 Heat of formation + Delta-G solvation = -54.036638 kcal Electronic energy + Delta-G solvation = -25588.261963 eV Core-core repulsion = 21855.395855 eV Total energy + Delta-G solvation = -3732.866108 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.67846 -40.89403 -39.21138 -38.48547 -36.26550 -34.91034 -34.46438 -32.22745 -31.78393 -30.82049 -28.85667 -28.08653 -27.48447 -27.24616 -23.68808 -22.86633 -22.62646 -21.86908 -21.09967 -19.62774 -18.82361 -18.24462 -17.53882 -17.31826 -17.12978 -16.80339 -16.62983 -16.47358 -15.77074 -15.36529 -15.00182 -14.74164 -14.67360 -14.62745 -14.12325 -14.00844 -13.96843 -13.69618 -13.55946 -13.30760 -13.12369 -12.95086 -12.84255 -12.81384 -12.66630 -12.35628 -12.20346 -12.03330 -11.82393 -11.69556 -11.55946 -11.21122 -10.93595 -10.73394 -9.59676 -9.42791 -9.16549 -8.80906 -8.64408 -6.40017 0.32925 0.44742 0.78286 0.95990 1.34335 1.43435 1.49157 1.50804 1.67448 2.19462 2.63002 2.70610 2.73044 3.49139 3.70339 3.80469 3.87795 3.93352 4.04222 4.14567 4.30992 4.39560 4.44654 4.47358 4.60902 4.68018 4.80850 4.83227 4.87946 4.95717 4.98466 5.06386 5.08470 5.11739 5.18098 5.29685 5.30519 5.35726 5.54839 5.66247 5.70204 5.80710 5.86392 6.04895 6.07626 6.30610 6.35284 6.56051 6.65483 6.90381 6.97482 7.21208 8.30520 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.017950 B = 0.002310 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.544988 B =12116.508046 C =13348.424349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.047 4.047 3 C -0.165 4.165 4 C -0.048 4.048 5 C -0.114 4.114 6 C -0.185 4.185 7 C 0.115 3.885 8 O -0.324 6.324 9 C 0.055 3.945 10 C 0.500 3.500 11 O -0.556 6.556 12 N -0.648 5.648 13 C 0.157 3.843 14 C -0.246 4.246 15 C -0.091 4.091 16 C -0.197 4.197 17 C 0.087 3.913 18 C -0.503 4.503 19 H 0.059 0.941 20 C 0.038 3.962 21 N -0.820 5.820 22 Si 0.981 3.019 23 H -0.268 1.268 24 H -0.257 1.257 25 H -0.260 1.260 26 C -0.240 4.240 27 C -0.222 4.222 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.147 0.853 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.117 0.883 36 H 0.132 0.868 37 H 0.126 0.874 38 H 0.427 0.573 39 H 0.138 0.862 40 H 0.126 0.874 41 H 0.105 0.895 42 H 0.290 0.710 43 H 0.080 0.920 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.792 18.473 4.537 25.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.047 4.047 3 C -0.183 4.183 4 C -0.049 4.049 5 C -0.170 4.170 6 C -0.204 4.204 7 C 0.071 3.929 8 O -0.238 6.238 9 C -0.023 4.023 10 C 0.288 3.712 11 O -0.433 6.433 12 N -0.296 5.296 13 C 0.065 3.935 14 C -0.267 4.267 15 C -0.109 4.109 16 C -0.216 4.216 17 C 0.085 3.915 18 C -0.532 4.532 19 H 0.078 0.922 20 C -0.177 4.177 21 N -0.446 5.446 22 Si 0.801 3.199 23 H -0.192 1.192 24 H -0.181 1.181 25 H -0.185 1.185 26 C -0.262 4.262 27 C -0.241 4.241 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.165 0.835 32 H 0.100 0.900 33 H 0.106 0.894 34 H 0.086 0.914 35 H 0.135 0.865 36 H 0.149 0.851 37 H 0.143 0.857 38 H 0.266 0.734 39 H 0.155 0.845 40 H 0.144 0.856 41 H 0.123 0.877 42 H 0.101 0.899 43 H 0.098 0.902 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -15.769 18.369 4.439 24.613 hybrid contribution 0.742 -0.479 -0.476 1.004 sum -15.026 17.890 3.963 23.697 Atomic orbital electron populations 1.20883 0.88583 1.04102 1.03439 1.20099 0.97675 0.91964 0.95000 1.21169 0.93110 0.98746 1.05243 1.19997 0.94402 0.94700 0.95763 1.20869 1.00066 0.92748 1.03366 1.20480 1.00304 0.90267 1.09343 1.19280 0.91678 0.84989 0.96985 1.86127 1.36059 1.12559 1.89044 1.22542 0.92242 0.80544 1.06999 1.20970 0.89220 0.84978 0.76058 1.90794 1.18039 1.86109 1.48329 1.43075 1.10945 1.03284 1.72315 1.17468 0.92128 0.87285 0.96660 1.20497 1.04517 0.93125 1.08523 1.20872 0.94243 0.97893 0.97937 1.21331 0.99725 0.99006 1.01582 1.17841 0.91846 0.91628 0.90227 1.19744 1.09142 0.94509 1.29841 0.92237 1.26683 1.03343 0.93919 0.93738 1.69848 1.38032 1.02569 1.34143 0.85190 0.76563 0.79363 0.78753 1.19204 1.18119 1.18469 1.20949 0.98531 0.99403 1.07286 1.21369 0.91683 1.00651 1.10384 0.89974 0.90451 0.90015 0.83519 0.90050 0.89412 0.91429 0.86458 0.85093 0.85675 0.73413 0.84452 0.85584 0.87676 0.89912 0.90190 0.83221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 10.01 71.24 0.71 -0.33 16 2 C -0.05 -0.76 5.88 -19.88 -0.12 -0.88 16 3 C -0.16 -2.66 9.35 22.28 0.21 -2.46 16 4 C -0.05 -0.93 5.88 -19.88 -0.12 -1.05 16 5 C -0.11 -1.52 10.01 71.24 0.71 -0.80 16 6 C -0.19 -4.67 9.64 22.37 0.22 -4.46 16 7 C 0.12 3.00 6.69 22.51 0.15 3.15 16 8 O -0.32 -10.17 9.67 -73.42 -0.71 -10.88 16 9 C 0.05 1.30 5.22 71.24 0.37 1.67 16 10 C 0.50 17.93 7.63 87.66 0.67 18.60 16 11 O -0.56 -27.43 14.25 15.98 0.23 -27.20 16 12 N -0.65 -21.45 5.34 -303.64 -1.62 -23.07 16 13 C 0.16 7.05 6.25 38.10 0.24 7.29 16 14 C -0.25 -10.10 9.97 22.58 0.23 -9.87 16 15 C -0.09 -4.11 10.02 22.20 0.22 -3.89 16 16 C -0.20 -10.66 8.69 22.75 0.20 -10.46 16 17 C 0.09 5.12 5.57 -21.31 -0.12 5.01 16 18 C -0.50 -29.87 9.05 23.46 0.21 -29.65 16 19 H 0.06 3.60 7.90 -2.91 -0.02 3.57 16 20 C 0.04 2.04 5.16 85.25 0.44 2.48 16 21 N -0.82 -44.11 10.94 21.82 0.24 -43.88 16 22 Si 0.98 40.85 29.59 68.60 2.03 42.88 16 23 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 24 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 25 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 26 C -0.24 -13.23 8.39 22.85 0.19 -13.04 16 27 C -0.22 -4.26 8.69 22.36 0.19 -4.06 16 28 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.08 0.58 8.09 -2.39 -0.02 0.56 16 30 H 0.08 0.55 8.09 -2.38 -0.02 0.53 16 31 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 32 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.09 0.82 8.09 -2.38 -0.02 0.80 16 34 H 0.07 0.92 8.08 -2.39 -0.02 0.90 16 35 H 0.12 3.12 8.06 -2.91 -0.02 3.09 16 36 H 0.13 2.04 7.67 -2.39 -0.02 2.02 16 37 H 0.13 2.15 7.65 -2.39 -0.02 2.13 16 38 H 0.43 9.20 8.82 -92.71 -0.82 8.39 16 39 H 0.14 4.36 8.06 -2.91 -0.02 4.33 16 40 H 0.13 4.79 8.06 -2.91 -0.02 4.77 16 41 H 0.11 5.89 6.16 -2.91 -0.02 5.88 16 42 H 0.29 13.90 8.30 -92.71 -0.77 13.13 16 43 H 0.08 4.72 6.48 -2.91 -0.02 4.70 16 44 H 0.15 2.02 6.30 -2.91 -0.02 2.00 16 Total: -1.00 -79.42 373.34 4.99 -74.44 By element: Atomic # 1 Polarization: 30.25 SS G_CDS: 0.21 Total: 30.46 kcal Atomic # 6 Polarization: -47.36 SS G_CDS: 4.61 Total: -42.75 kcal Atomic # 7 Polarization: -65.56 SS G_CDS: -1.38 Total: -66.95 kcal Atomic # 8 Polarization: -37.60 SS G_CDS: -0.48 Total: -38.09 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.88 kcal Total: -79.42 4.99 -74.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180540162.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.399 kcal (2) G-P(sol) polarization free energy of solvation -79.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds