Wall clock time and date at job start Tue Mar 31 2020 14:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42899 * 109.46923 * 2 1 4 4 C 1.50694 * 109.47563 * 239.99918 * 2 1 3 5 5 O 1.21291 * 119.99798 * 351.08524 * 4 2 1 6 6 N 1.34774 * 120.00356 * 171.08875 * 4 2 1 7 7 C 1.37101 * 119.99849 * 356.46005 * 6 4 2 8 8 H 1.08000 * 120.00073 * 40.70748 * 7 6 4 9 9 C 1.38956 * 120.00027 * 220.71086 * 7 6 4 10 10 N 1.31407 * 119.99759 * 209.65091 * 9 7 6 11 11 Si 1.86799 * 119.99670 * 29.64444 * 9 7 6 12 12 H 1.48499 * 109.47035 * 94.95169 * 11 9 7 13 13 H 1.48506 * 109.46668 * 214.94517 * 11 9 7 14 14 H 1.48497 * 109.47512 * 334.94722 * 11 9 7 15 15 C 1.46503 * 120.00437 * 176.46479 * 6 4 2 16 16 C 1.50700 * 109.46693 * 271.22968 * 15 6 4 17 17 C 1.38243 * 119.99798 * 87.93672 * 16 15 6 18 18 C 1.38239 * 119.99650 * 179.97438 * 17 16 15 19 19 C 1.38230 * 120.00211 * 0.09698 * 18 17 16 20 20 C 1.38237 * 120.00087 * 359.85745 * 19 18 17 21 21 C 1.38232 * 120.00394 * 267.91209 * 16 15 6 22 22 C 1.50703 * 109.47005 * 119.99899 * 2 1 3 23 23 C 1.38232 * 120.00418 * 75.56476 * 22 2 1 24 24 C 1.38233 * 120.00136 * 179.78959 * 23 22 2 25 25 C 1.38230 * 119.99912 * 0.43996 * 24 23 22 26 26 C 1.38236 * 120.00119 * 359.81354 * 25 24 23 27 27 C 1.38231 * 120.00262 * 359.97438 * 26 25 24 28 28 H 1.09002 * 109.46715 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47453 * 300.00139 * 1 2 3 30 30 H 1.09003 * 109.46690 * 60.00422 * 1 2 3 31 31 H 0.96704 * 114.00344 * 179.97438 * 3 2 1 32 32 H 0.96998 * 119.99773 * 180.02562 * 10 9 7 33 33 H 1.08992 * 109.47526 * 151.22799 * 15 6 4 34 34 H 1.09003 * 109.46989 * 31.22665 * 15 6 4 35 35 H 1.07998 * 119.99971 * 359.70224 * 17 16 15 36 36 H 1.08001 * 119.99829 * 179.97438 * 18 17 16 37 37 H 1.08003 * 120.00032 * 179.97438 * 19 18 17 38 38 H 1.08002 * 120.00023 * 180.02562 * 20 19 18 39 39 H 1.07997 * 119.99534 * 0.02562 * 21 16 15 40 40 H 1.08004 * 119.99585 * 359.97438 * 23 22 2 41 41 H 1.08003 * 119.99742 * 180.27997 * 24 23 22 42 42 H 1.08007 * 119.99827 * 179.83028 * 25 24 23 43 43 H 1.08001 * 119.99674 * 179.97438 * 26 25 24 44 44 H 1.07994 * 120.00373 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 1.2563 -1.3102 -1.9437 6 7 3.3442 -0.6793 -1.5381 7 6 4.2105 0.0582 -0.7730 8 1 4.1091 0.0659 0.3022 9 6 5.2189 0.7960 -1.3810 10 7 6.3485 1.0130 -0.7456 11 14 4.9687 1.4791 -3.1015 12 1 4.4831 2.8796 -3.0123 13 1 6.2576 1.4481 -3.8386 14 1 3.9668 0.6526 -3.8215 15 6 3.8445 -1.4335 -2.6901 16 6 4.2104 -2.8295 -2.2561 17 6 3.2537 -3.8274 -2.2595 18 6 3.5894 -5.1080 -1.8618 19 6 4.8812 -5.3903 -1.4588 20 6 5.8380 -4.3927 -1.4563 21 6 5.5026 -3.1123 -1.8549 22 6 2.0323 -0.7104 1.2305 23 6 1.9814 -2.0900 1.3014 24 6 2.4462 -2.7418 2.4284 25 6 2.9535 -2.0135 3.4881 26 6 2.9996 -0.6336 3.4194 27 6 2.5389 0.0180 2.2907 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 2.9703 1.4237 0.0004 32 1 7.0523 1.5283 -1.1699 33 1 4.7258 -0.9362 -3.0950 34 1 3.0707 -1.4822 -3.4563 35 1 2.2430 -3.6054 -2.5687 36 1 2.8419 -5.8876 -1.8641 37 1 5.1433 -6.3908 -1.1477 38 1 6.8474 -4.6134 -1.1418 39 1 6.2499 -2.3327 -1.8522 40 1 1.5812 -2.6587 0.4751 41 1 2.4105 -3.8199 2.4819 42 1 3.3141 -2.5227 4.3697 43 1 3.3956 -0.0647 4.2475 44 1 2.5753 1.0960 2.2368 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182930859.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:27 Heat of formation + Delta-G solvation = -17.091680 kcal Electronic energy + Delta-G solvation = -29103.252640 eV Core-core repulsion = 25371.988586 eV Total energy + Delta-G solvation = -3731.264054 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.14977 -38.78886 -37.90351 -35.78611 -35.19898 -32.37312 -31.56157 -30.90926 -30.37824 -30.34073 -28.77682 -26.22876 -25.22610 -23.24583 -22.11037 -22.00625 -21.34686 -20.61402 -18.99490 -17.98849 -17.09098 -16.55710 -15.90278 -15.48162 -15.36325 -14.75629 -14.53890 -14.37174 -14.26758 -13.94224 -13.64389 -13.31104 -12.98515 -12.89647 -12.80005 -12.69633 -12.29984 -12.10219 -11.96639 -11.83974 -11.65759 -11.48215 -11.32099 -11.05001 -10.92645 -10.77110 -10.56824 -10.47119 -10.37027 -9.99824 -9.97507 -9.24193 -8.67457 -8.44347 -8.40414 -8.32009 -8.05818 -7.81289 -6.71667 -4.28331 1.78575 1.83880 1.88253 1.92277 3.01121 3.14537 3.23035 3.53444 3.99026 4.08434 4.24894 4.51925 4.69278 5.06991 5.19161 5.35034 5.36266 5.38796 5.41074 5.48140 5.56837 5.69175 5.75523 5.82931 5.91347 5.95837 6.04203 6.05347 6.16168 6.29188 6.33705 6.38447 6.45357 6.50795 6.52501 6.59455 6.63860 6.91439 6.93716 6.95002 6.97874 7.09483 7.16877 7.26124 7.44978 7.52128 7.89500 8.03202 8.53125 8.75747 9.17334 9.52790 10.35338 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.008817 B = 0.007901 C = 0.005841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3174.744014 B = 3542.786700 C = 4792.330610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.179 3.821 3 O -0.562 6.562 4 C 0.470 3.530 5 O -0.586 6.586 6 N -0.446 5.446 7 C -0.376 4.376 8 H 0.110 0.890 9 C 0.083 3.917 10 N -0.830 5.830 11 Si 0.855 3.145 12 H -0.272 1.272 13 H -0.281 1.281 14 H -0.254 1.254 15 C 0.146 3.854 16 C -0.083 4.083 17 C -0.103 4.103 18 C -0.132 4.132 19 C -0.129 4.129 20 C -0.128 4.128 21 C -0.090 4.090 22 C -0.087 4.087 23 C -0.102 4.102 24 C -0.120 4.120 25 C -0.126 4.126 26 C -0.121 4.121 27 C -0.098 4.098 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.400 0.600 32 H 0.278 0.722 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.124 0.876 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.124 0.876 40 H 0.117 0.883 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.117 0.883 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.882 -6.105 3.196 7.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.135 3.865 3 O -0.379 6.379 4 C 0.258 3.742 5 O -0.471 6.471 6 N -0.166 5.166 7 C -0.502 4.502 8 H 0.127 0.873 9 C -0.129 4.129 10 N -0.461 5.461 11 Si 0.679 3.321 12 H -0.198 1.198 13 H -0.206 1.206 14 H -0.177 1.177 15 C 0.023 3.977 16 C -0.084 4.084 17 C -0.122 4.122 18 C -0.150 4.150 19 C -0.147 4.147 20 C -0.146 4.146 21 C -0.108 4.108 22 C -0.088 4.088 23 C -0.120 4.120 24 C -0.139 4.139 25 C -0.144 4.144 26 C -0.139 4.139 27 C -0.116 4.116 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.260 0.740 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.142 0.858 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.132 0.868 39 H 0.142 0.858 40 H 0.135 0.865 41 H 0.132 0.868 42 H 0.132 0.868 43 H 0.135 0.865 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.616 -6.148 2.850 7.680 hybrid contribution 1.059 0.254 -0.700 1.295 sum -2.556 -5.893 2.150 6.774 Atomic orbital electron populations 1.21507 0.91042 1.02503 1.02204 1.19813 0.94656 0.82792 0.89256 1.86346 1.31849 1.23315 1.96401 1.20970 0.82281 0.82998 0.87918 1.90523 1.55652 1.48103 1.52786 1.43583 1.05279 1.40873 1.26871 1.19047 1.11589 1.27301 0.92223 0.87278 1.25355 0.93848 0.95427 0.98281 1.69922 1.02374 1.34091 1.39745 0.87277 0.78802 0.81019 0.85015 1.19758 1.20640 1.17744 1.20655 0.99111 0.87925 0.89990 1.20335 0.93521 0.95668 0.98867 1.21203 0.99409 0.92506 0.99068 1.21020 0.96288 0.96673 1.01020 1.20999 0.93738 0.98725 1.01273 1.21054 0.99082 0.93464 1.01029 1.21143 0.96460 0.96227 0.96999 1.20274 0.98802 0.93968 0.95708 1.20918 0.99418 0.93865 0.97784 1.20970 0.99677 0.99284 0.93924 1.21022 1.00573 0.94296 0.98538 1.21029 1.00322 0.94478 0.98116 1.20956 0.97492 1.00433 0.92692 0.91047 0.92153 0.91539 0.74016 0.91189 0.90916 0.90596 0.85775 0.86899 0.87016 0.86753 0.85825 0.86511 0.86762 0.86801 0.86491 0.85464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.07 8.12 37.16 0.30 -1.77 16 2 C 0.18 3.64 0.92 -92.92 -0.09 3.55 16 3 O -0.56 -11.88 11.64 -35.23 -0.41 -12.29 16 4 C 0.47 10.57 5.63 -10.99 -0.06 10.51 16 5 O -0.59 -13.82 14.95 5.55 0.08 -13.74 16 6 N -0.45 -10.12 2.07 -116.10 -0.24 -10.36 16 7 C -0.38 -8.89 6.51 -14.93 -0.10 -8.99 16 8 H 0.11 2.72 4.90 -52.49 -0.26 2.46 16 9 C 0.08 1.97 5.11 -17.47 -0.09 1.89 16 10 N -0.83 -20.66 13.96 55.50 0.77 -19.89 16 11 Si 0.85 18.83 26.30 -169.99 -4.47 14.36 16 12 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 13 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 14 H -0.25 -5.62 5.74 56.52 0.32 -5.29 16 15 C 0.15 3.15 3.80 -5.19 -0.02 3.13 16 16 C -0.08 -1.65 5.46 -104.62 -0.57 -2.22 16 17 C -0.10 -1.91 9.71 -39.58 -0.38 -2.29 16 18 C -0.13 -2.10 10.05 -39.58 -0.40 -2.50 16 19 C -0.13 -1.96 10.05 -39.58 -0.40 -2.36 16 20 C -0.13 -2.11 10.05 -39.58 -0.40 -2.51 16 21 C -0.09 -1.71 9.69 -39.59 -0.38 -2.09 16 22 C -0.09 -1.66 3.33 -104.62 -0.35 -2.00 16 23 C -0.10 -1.88 9.09 -39.59 -0.36 -2.24 16 24 C -0.12 -1.97 10.05 -39.59 -0.40 -2.37 16 25 C -0.13 -1.94 10.05 -39.59 -0.40 -2.33 16 26 C -0.12 -1.94 10.05 -39.58 -0.40 -2.33 16 27 C -0.10 -1.75 8.33 -39.58 -0.33 -2.08 16 28 H 0.07 1.24 7.98 -51.93 -0.41 0.82 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.40 8.76 5.05 45.56 0.23 8.99 16 32 H 0.28 6.51 8.31 -40.82 -0.34 6.17 16 33 H 0.07 1.57 4.46 -51.93 -0.23 1.33 16 34 H 0.08 1.65 7.37 -51.93 -0.38 1.26 16 35 H 0.12 2.36 7.44 -52.49 -0.39 1.97 16 36 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 37 H 0.11 1.38 8.06 -52.48 -0.42 0.96 16 38 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 39 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 40 H 0.12 2.25 7.55 -52.48 -0.40 1.85 16 41 H 0.11 1.62 8.06 -52.48 -0.42 1.19 16 42 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 43 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 44 H 0.13 2.21 7.11 -52.49 -0.37 1.84 16 LS Contribution 357.71 15.07 5.39 5.39 Total: -1.00 -26.68 357.71 -8.92 -35.61 By element: Atomic # 1 Polarization: 25.17 SS G_CDS: -5.23 Total: 19.94 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: -4.82 Total: -19.02 kcal Atomic # 7 Polarization: -30.78 SS G_CDS: 0.53 Total: -30.25 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -0.33 Total: -26.03 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -4.47 Total: 14.36 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -26.68 -8.92 -35.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182930859.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.514 kcal (2) G-P(sol) polarization free energy of solvation -26.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds