Wall clock time and date at job start Tue Mar 31 2020 14:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42899 * 109.46923 * 2 1 4 4 C 1.50694 * 109.47563 * 239.99918 * 2 1 3 5 5 O 1.21291 * 119.99798 * 351.08524 * 4 2 1 6 6 N 1.34774 * 120.00356 * 171.08875 * 4 2 1 7 7 C 1.37101 * 119.99849 * 356.46005 * 6 4 2 8 8 H 1.08000 * 120.00073 * 40.70748 * 7 6 4 9 9 C 1.38956 * 120.00027 * 220.71086 * 7 6 4 10 10 N 1.31407 * 119.99759 * 209.65091 * 9 7 6 11 11 Si 1.86799 * 119.99670 * 29.64444 * 9 7 6 12 12 H 1.48499 * 109.47035 * 94.95169 * 11 9 7 13 13 H 1.48506 * 109.46668 * 214.94517 * 11 9 7 14 14 H 1.48497 * 109.47512 * 334.94722 * 11 9 7 15 15 C 1.46503 * 120.00437 * 176.46479 * 6 4 2 16 16 C 1.50700 * 109.46693 * 271.22968 * 15 6 4 17 17 C 1.38243 * 119.99798 * 87.93672 * 16 15 6 18 18 C 1.38239 * 119.99650 * 179.97438 * 17 16 15 19 19 C 1.38230 * 120.00211 * 0.09698 * 18 17 16 20 20 C 1.38237 * 120.00087 * 359.85745 * 19 18 17 21 21 C 1.38232 * 120.00394 * 267.91209 * 16 15 6 22 22 C 1.50703 * 109.47005 * 119.99899 * 2 1 3 23 23 C 1.38232 * 120.00418 * 75.56476 * 22 2 1 24 24 C 1.38233 * 120.00136 * 179.78959 * 23 22 2 25 25 C 1.38230 * 119.99912 * 0.43996 * 24 23 22 26 26 C 1.38236 * 120.00119 * 359.81354 * 25 24 23 27 27 C 1.38231 * 120.00262 * 359.97438 * 26 25 24 28 28 H 1.09002 * 109.46715 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47453 * 300.00139 * 1 2 3 30 30 H 1.09003 * 109.46690 * 60.00422 * 1 2 3 31 31 H 0.96704 * 114.00344 * 179.97438 * 3 2 1 32 32 H 0.96998 * 119.99773 * 180.02562 * 10 9 7 33 33 H 1.08992 * 109.47526 * 151.22799 * 15 6 4 34 34 H 1.09003 * 109.46989 * 31.22665 * 15 6 4 35 35 H 1.07998 * 119.99971 * 359.70224 * 17 16 15 36 36 H 1.08001 * 119.99829 * 179.97438 * 18 17 16 37 37 H 1.08003 * 120.00032 * 179.97438 * 19 18 17 38 38 H 1.08002 * 120.00023 * 180.02562 * 20 19 18 39 39 H 1.07997 * 119.99534 * 0.02562 * 21 16 15 40 40 H 1.08004 * 119.99585 * 359.97438 * 23 22 2 41 41 H 1.08003 * 119.99742 * 180.27997 * 24 23 22 42 42 H 1.08007 * 119.99827 * 179.83028 * 25 24 23 43 43 H 1.08001 * 119.99674 * 179.97438 * 26 25 24 44 44 H 1.07994 * 120.00373 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 1.2563 -1.3102 -1.9437 6 7 3.3442 -0.6793 -1.5381 7 6 4.2105 0.0582 -0.7730 8 1 4.1091 0.0659 0.3022 9 6 5.2189 0.7960 -1.3810 10 7 6.3485 1.0130 -0.7456 11 14 4.9687 1.4791 -3.1015 12 1 4.4831 2.8796 -3.0123 13 1 6.2576 1.4481 -3.8386 14 1 3.9668 0.6526 -3.8215 15 6 3.8445 -1.4335 -2.6901 16 6 4.2104 -2.8295 -2.2561 17 6 3.2537 -3.8274 -2.2595 18 6 3.5894 -5.1080 -1.8618 19 6 4.8812 -5.3903 -1.4588 20 6 5.8380 -4.3927 -1.4563 21 6 5.5026 -3.1123 -1.8549 22 6 2.0323 -0.7104 1.2305 23 6 1.9814 -2.0900 1.3014 24 6 2.4462 -2.7418 2.4284 25 6 2.9535 -2.0135 3.4881 26 6 2.9996 -0.6336 3.4194 27 6 2.5389 0.0180 2.2907 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 2.9703 1.4237 0.0004 32 1 7.0523 1.5283 -1.1699 33 1 4.7258 -0.9362 -3.0950 34 1 3.0707 -1.4822 -3.4563 35 1 2.2430 -3.6054 -2.5687 36 1 2.8419 -5.8876 -1.8641 37 1 5.1433 -6.3908 -1.1477 38 1 6.8474 -4.6134 -1.1418 39 1 6.2499 -2.3327 -1.8522 40 1 1.5812 -2.6587 0.4751 41 1 2.4105 -3.8199 2.4819 42 1 3.3141 -2.5227 4.3697 43 1 3.3956 -0.0647 4.2475 44 1 2.5753 1.0960 2.2368 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182930859.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:26 Heat of formation + Delta-G solvation = -30.270576 kcal Electronic energy + Delta-G solvation = -29103.824120 eV Core-core repulsion = 25371.988586 eV Total energy + Delta-G solvation = -3731.835534 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.76464 -40.18051 -39.36153 -37.41386 -36.95159 -34.18668 -33.05945 -32.42299 -31.72531 -31.65853 -30.18572 -27.81325 -27.04433 -24.73778 -23.44524 -23.37020 -22.75896 -22.10128 -20.71445 -19.71370 -18.54402 -18.11946 -17.43944 -17.24309 -16.77231 -16.26416 -16.06244 -15.88403 -15.72155 -15.45457 -15.11726 -14.94136 -14.53197 -14.38458 -14.24529 -14.18700 -13.90317 -13.51497 -13.41529 -13.34100 -13.14477 -13.05091 -12.95718 -12.69256 -12.53977 -12.27022 -12.04003 -11.91083 -11.89657 -11.68412 -11.57404 -11.03734 -10.35023 -9.81130 -9.76331 -9.71115 -9.63293 -9.42846 -8.59870 -6.16264 0.43686 0.49580 0.55868 0.56513 1.19776 1.32113 1.41291 1.77409 2.16710 2.44930 2.84558 2.93712 3.07140 3.50826 3.71997 3.90610 4.00888 4.05149 4.12914 4.19153 4.20906 4.30142 4.32757 4.34353 4.37979 4.57652 4.65979 4.71977 4.75640 4.79739 4.86100 4.92063 5.10108 5.14373 5.16096 5.20348 5.21868 5.36401 5.61204 5.62269 5.64157 5.65134 5.72098 5.82484 6.04000 6.15659 6.17641 6.18569 6.80147 6.89803 7.35575 7.72408 8.50040 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.008817 B = 0.007901 C = 0.005841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3174.744014 B = 3542.786700 C = 4792.330610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.174 3.826 3 O -0.567 6.567 4 C 0.463 3.537 5 O -0.604 6.604 6 N -0.450 5.450 7 C -0.366 4.366 8 H 0.097 0.903 9 C 0.062 3.938 10 N -0.857 5.857 11 Si 0.893 3.107 12 H -0.276 1.276 13 H -0.274 1.274 14 H -0.261 1.261 15 C 0.145 3.855 16 C -0.103 4.103 17 C -0.117 4.117 18 C -0.125 4.125 19 C -0.117 4.117 20 C -0.126 4.126 21 C -0.110 4.110 22 C -0.101 4.101 23 C -0.119 4.119 24 C -0.122 4.122 25 C -0.121 4.121 26 C -0.122 4.122 27 C -0.114 4.114 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.394 0.606 32 H 0.282 0.718 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.110 0.890 36 H 0.144 0.856 37 H 0.153 0.847 38 H 0.140 0.860 39 H 0.105 0.895 40 H 0.101 0.899 41 H 0.138 0.862 42 H 0.150 0.850 43 H 0.145 0.855 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.460 -8.267 4.830 9.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.130 3.870 3 O -0.382 6.382 4 C 0.252 3.748 5 O -0.489 6.489 6 N -0.170 5.170 7 C -0.492 4.492 8 H 0.114 0.886 9 C -0.148 4.148 10 N -0.490 5.490 11 Si 0.717 3.283 12 H -0.202 1.202 13 H -0.199 1.199 14 H -0.185 1.185 15 C 0.022 3.978 16 C -0.104 4.104 17 C -0.135 4.135 18 C -0.143 4.143 19 C -0.135 4.135 20 C -0.144 4.144 21 C -0.128 4.128 22 C -0.102 4.102 23 C -0.137 4.137 24 C -0.140 4.140 25 C -0.139 4.139 26 C -0.139 4.139 27 C -0.132 4.132 28 H 0.093 0.907 29 H 0.098 0.902 30 H 0.077 0.923 31 H 0.253 0.747 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.128 0.872 36 H 0.161 0.839 37 H 0.171 0.829 38 H 0.158 0.842 39 H 0.123 0.877 40 H 0.119 0.881 41 H 0.156 0.844 42 H 0.168 0.832 43 H 0.162 0.838 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.197 -8.308 4.476 9.964 hybrid contribution 0.913 0.832 -1.167 1.699 sum -2.284 -7.476 3.310 8.489 Atomic orbital electron populations 1.21505 0.89634 1.02922 1.02757 1.19957 0.95756 0.82171 0.89103 1.86330 1.31267 1.24169 1.96477 1.21453 0.82081 0.82810 0.88416 1.90494 1.55970 1.48924 1.53552 1.43662 1.05378 1.41010 1.26937 1.18920 1.11302 1.27213 0.91771 0.88556 1.25627 0.93686 0.95566 0.99910 1.69934 1.02956 1.35258 1.40869 0.86692 0.78669 0.79978 0.82974 1.20188 1.19893 1.18542 1.20616 0.98288 0.89365 0.89505 1.20196 0.94514 0.94943 1.00733 1.21170 0.98476 0.93669 1.00224 1.21366 0.97584 0.96016 0.99361 1.21436 0.92714 1.00116 0.99252 1.21364 1.00756 0.92429 0.99861 1.21100 0.95705 0.97367 0.98670 1.20160 1.00208 0.94333 0.95502 1.20901 1.00715 0.93622 0.98467 1.21281 0.98771 1.00646 0.93277 1.21442 0.99124 0.94089 0.99228 1.21399 0.99256 0.95255 0.98025 1.21068 0.98240 1.00477 0.93381 0.90682 0.90209 0.92287 0.74673 0.90760 0.91580 0.91728 0.87208 0.83856 0.82925 0.84230 0.87691 0.88119 0.84393 0.83216 0.83758 0.85781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.03 8.12 71.98 0.58 -3.44 16 2 C 0.17 7.22 0.92 -12.29 -0.01 7.21 16 3 O -0.57 -24.54 11.64 -148.98 -1.73 -26.28 16 4 C 0.46 21.48 5.63 87.66 0.49 21.97 16 5 O -0.60 -29.46 14.95 -3.06 -0.05 -29.50 16 6 N -0.45 -21.07 2.07 -639.60 -1.32 -22.39 16 7 C -0.37 -17.77 6.51 84.04 0.55 -17.22 16 8 H 0.10 4.93 4.90 -2.91 -0.01 4.92 16 9 C 0.06 3.01 5.11 84.93 0.43 3.44 16 10 N -0.86 -43.30 13.96 21.66 0.30 -43.00 16 11 Si 0.89 39.65 26.30 68.60 1.80 41.45 16 12 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 13 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 14 H -0.26 -11.83 5.74 99.48 0.57 -11.26 16 15 C 0.14 6.49 3.80 85.63 0.33 6.82 16 16 C -0.10 -4.17 5.46 -19.86 -0.11 -4.27 16 17 C -0.12 -4.29 9.71 22.27 0.22 -4.08 16 18 C -0.13 -3.67 10.05 22.27 0.22 -3.45 16 19 C -0.12 -3.12 10.05 22.27 0.22 -2.90 16 20 C -0.13 -3.86 10.05 22.27 0.22 -3.64 16 21 C -0.11 -4.18 9.69 22.27 0.22 -3.97 16 22 C -0.10 -3.88 3.33 -19.86 -0.07 -3.94 16 23 C -0.12 -4.35 9.09 22.27 0.20 -4.15 16 24 C -0.12 -3.71 10.05 22.27 0.22 -3.49 16 25 C -0.12 -3.32 10.05 22.27 0.22 -3.10 16 26 C -0.12 -3.60 10.05 22.27 0.22 -3.37 16 27 C -0.11 -4.00 8.33 22.27 0.19 -3.82 16 28 H 0.07 2.63 7.98 -2.39 -0.02 2.62 16 29 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 30 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.39 17.87 5.05 -74.05 -0.37 17.50 16 32 H 0.28 13.38 8.31 -92.71 -0.77 12.61 16 33 H 0.07 2.97 4.46 -2.39 -0.01 2.96 16 34 H 0.06 2.96 7.37 -2.39 -0.02 2.94 16 35 H 0.11 4.29 7.44 -2.91 -0.02 4.27 16 36 H 0.14 3.29 8.06 -2.91 -0.02 3.27 16 37 H 0.15 2.88 8.06 -2.91 -0.02 2.85 16 38 H 0.14 3.51 8.06 -2.91 -0.02 3.49 16 39 H 0.10 4.31 8.06 -2.91 -0.02 4.29 16 40 H 0.10 3.94 7.55 -2.91 -0.02 3.92 16 41 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 42 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 43 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 44 H 0.12 4.34 7.11 -2.91 -0.02 4.32 16 Total: -1.00 -58.52 357.71 3.88 -54.64 By element: Atomic # 1 Polarization: 49.97 SS G_CDS: 0.51 Total: 50.48 kcal Atomic # 6 Polarization: -29.76 SS G_CDS: 4.36 Total: -25.40 kcal Atomic # 7 Polarization: -64.37 SS G_CDS: -1.02 Total: -65.39 kcal Atomic # 8 Polarization: -54.00 SS G_CDS: -1.78 Total: -55.78 kcal Atomic # 14 Polarization: 39.65 SS G_CDS: 1.80 Total: 41.45 kcal Total: -58.52 3.88 -54.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182930859.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.369 kcal (2) G-P(sol) polarization free energy of solvation -58.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds