Wall clock time and date at job start Tue Mar 31 2020 14:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42904 * 109.47229 * 2 1 4 4 C 1.50703 * 109.47383 * 120.00149 * 2 1 3 5 5 O 1.21294 * 119.99381 * 7.22846 * 4 2 1 6 6 N 1.34768 * 120.00341 * 187.23612 * 4 2 1 7 7 C 1.37101 * 119.99954 * 4.61187 * 6 4 2 8 8 H 1.08003 * 119.99993 * 318.11854 * 7 6 4 9 9 C 1.38945 * 120.00166 * 138.12313 * 7 6 4 10 10 N 1.31407 * 120.00168 * 161.93302 * 9 7 6 11 11 Si 1.86808 * 119.99972 * 341.93004 * 9 7 6 12 12 H 1.48506 * 109.46834 * 95.28096 * 11 9 7 13 13 H 1.48493 * 109.47074 * 215.28205 * 11 9 7 14 14 H 1.48495 * 109.46988 * 335.28452 * 11 9 7 15 15 C 1.46502 * 120.00232 * 184.60965 * 6 4 2 16 16 C 1.50700 * 109.46894 * 86.62781 * 15 6 4 17 17 C 1.38238 * 120.00082 * 272.32778 * 16 15 6 18 18 C 1.38238 * 119.99973 * 179.76674 * 17 16 15 19 19 C 1.38227 * 120.00179 * 0.50499 * 18 17 16 20 20 C 1.38242 * 119.99800 * 359.74433 * 19 18 17 21 21 C 1.38232 * 120.00312 * 0.02562 * 20 19 18 22 22 C 1.50701 * 109.47197 * 240.00167 * 2 1 3 23 23 C 1.38231 * 120.00083 * 106.70198 * 22 2 1 24 24 C 1.38234 * 119.99779 * 180.02562 * 23 22 2 25 25 C 1.38241 * 120.00449 * 359.95679 * 24 23 22 26 26 C 1.38235 * 119.99682 * 0.27158 * 25 24 23 27 27 C 1.38238 * 119.99566 * 286.71766 * 22 2 1 28 28 H 1.09000 * 109.46800 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47180 * 299.99800 * 1 2 3 30 30 H 1.09000 * 109.47265 * 60.00198 * 1 2 3 31 31 H 0.96693 * 113.99931 * 180.02562 * 3 2 1 32 32 H 0.97005 * 119.99913 * 179.97438 * 10 9 7 33 33 H 1.08995 * 109.47102 * 206.62616 * 15 6 4 34 34 H 1.08992 * 109.47062 * 326.62880 * 15 6 4 35 35 H 1.08005 * 119.99822 * 359.97438 * 17 16 15 36 36 H 1.08004 * 119.99756 * 180.22879 * 18 17 16 37 37 H 1.07992 * 120.00336 * 179.72521 * 19 18 17 38 38 H 1.08003 * 119.99749 * 179.97438 * 20 19 18 39 39 H 1.07998 * 120.00536 * 179.97438 * 21 20 19 40 40 H 1.07993 * 120.00076 * 359.97438 * 23 22 2 41 41 H 1.07998 * 120.00014 * 179.97438 * 24 23 22 42 42 H 1.07998 * 120.00154 * 180.02562 * 25 24 23 43 43 H 1.07997 * 120.00209 * 179.72843 * 26 25 24 44 44 H 1.07995 * 120.00636 * 0.02562 * 27 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 1.2520 -1.2845 1.9603 6 7 3.3486 -0.7078 1.5199 7 6 4.2186 0.0191 0.7490 8 1 4.1140 0.0228 -0.3260 9 6 5.2350 0.7510 1.3505 10 7 6.2657 1.1509 0.6402 11 14 5.1362 1.1667 3.1691 12 1 5.8933 0.1554 3.9498 13 1 5.7214 2.5115 3.4019 14 1 3.7155 1.1635 3.6011 15 6 3.8498 -1.4817 2.6584 16 6 4.1322 -2.8954 2.2195 17 6 3.1272 -3.8439 2.2547 18 6 3.3850 -5.1396 1.8475 19 6 4.6504 -5.4893 1.4150 20 6 5.6568 -4.5420 1.3846 21 6 5.3979 -3.2453 1.7873 22 6 2.0323 -0.7104 -1.2305 23 6 2.5871 0.0142 -2.2688 24 6 3.0474 -0.6375 -3.3977 25 6 2.9538 -2.0137 -3.4879 26 6 2.3947 -2.7379 -2.4516 27 6 1.9380 -2.0866 -1.3209 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 2.9703 1.4236 -0.0004 32 1 6.9751 1.6622 1.0601 33 1 4.7675 -1.0268 3.0311 34 1 3.1008 -1.4898 3.4501 35 1 2.1397 -3.5718 2.5972 36 1 2.5988 -5.8797 1.8715 37 1 4.8530 -6.5025 1.1011 38 1 6.6457 -4.8154 1.0471 39 1 6.1842 -2.5053 1.7640 40 1 2.6602 1.0893 -2.1984 41 1 3.4805 -0.0714 -4.2091 42 1 3.3138 -2.5228 -4.3697 43 1 2.3175 -3.8126 -2.5239 44 1 1.5040 -2.6526 -0.5100 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182930860.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:31 Heat of formation + Delta-G solvation = -18.020716 kcal Electronic energy + Delta-G solvation = -29132.544769 eV Core-core repulsion = 25401.240428 eV Total energy + Delta-G solvation = -3731.304340 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.17745 -38.82409 -37.92244 -35.79813 -35.23914 -32.35839 -31.58321 -30.93374 -30.41323 -30.34136 -28.77765 -26.27603 -25.23733 -23.26043 -22.10357 -22.04461 -21.37648 -20.65302 -18.99254 -17.99447 -17.10694 -16.61228 -15.94286 -15.54027 -15.36373 -14.78051 -14.58285 -14.38096 -14.29948 -13.96489 -13.69043 -13.27585 -13.00287 -12.91661 -12.80405 -12.69681 -12.31696 -12.14798 -11.97555 -11.85381 -11.66235 -11.65167 -11.33713 -11.09498 -10.85764 -10.77732 -10.57785 -10.49643 -10.29011 -10.07842 -10.01205 -9.28063 -8.72040 -8.44490 -8.43829 -8.34633 -8.07448 -7.83154 -6.64192 -4.33254 1.76626 1.81836 1.88107 1.88774 2.94992 3.12688 3.22572 3.51140 3.97728 4.05863 4.24666 4.50631 4.70160 5.06595 5.17820 5.31450 5.32013 5.39111 5.40078 5.44323 5.56859 5.64299 5.71749 5.79381 5.85873 5.95417 6.00407 6.04536 6.11037 6.24120 6.31753 6.34183 6.44710 6.46749 6.51064 6.55036 6.63115 6.91257 6.91613 6.93322 6.94274 7.09512 7.18300 7.21526 7.45122 7.47931 7.90513 8.02685 8.52320 8.74691 9.14505 9.48898 10.42563 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.008861 B = 0.007927 C = 0.005891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3159.119979 B = 3531.603504 C = 4752.104869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.179 3.821 3 O -0.561 6.561 4 C 0.475 3.525 5 O -0.584 6.584 6 N -0.452 5.452 7 C -0.366 4.366 8 H 0.115 0.885 9 C 0.075 3.925 10 N -0.847 5.847 11 Si 0.871 3.129 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.257 1.257 15 C 0.134 3.866 16 C -0.082 4.082 17 C -0.102 4.102 18 C -0.131 4.131 19 C -0.128 4.128 20 C -0.128 4.128 21 C -0.092 4.092 22 C -0.087 4.087 23 C -0.096 4.096 24 C -0.121 4.121 25 C -0.126 4.126 26 C -0.121 4.121 27 C -0.103 4.103 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.400 0.600 32 H 0.278 0.722 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.126 0.874 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.122 0.878 40 H 0.128 0.872 41 H 0.117 0.883 42 H 0.114 0.886 43 H 0.114 0.886 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.112 -6.639 -3.111 7.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.135 3.865 3 O -0.377 6.377 4 C 0.263 3.737 5 O -0.468 6.468 6 N -0.172 5.172 7 C -0.492 4.492 8 H 0.132 0.868 9 C -0.135 4.135 10 N -0.480 5.480 11 Si 0.698 3.302 12 H -0.200 1.200 13 H -0.211 1.211 14 H -0.181 1.181 15 C 0.011 3.989 16 C -0.083 4.083 17 C -0.121 4.121 18 C -0.149 4.149 19 C -0.147 4.147 20 C -0.146 4.146 21 C -0.111 4.111 22 C -0.088 4.088 23 C -0.114 4.114 24 C -0.139 4.139 25 C -0.144 4.144 26 C -0.139 4.139 27 C -0.121 4.121 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.260 0.740 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.144 0.856 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.133 0.867 39 H 0.140 0.860 40 H 0.146 0.854 41 H 0.135 0.865 42 H 0.132 0.868 43 H 0.132 0.868 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.879 -6.641 -2.758 8.170 hybrid contribution 1.159 0.051 0.791 1.404 sum -2.720 -6.590 -1.967 7.395 Atomic orbital electron populations 1.21509 0.91003 1.02500 1.02258 1.19818 0.94680 0.82815 0.89207 1.86344 1.31748 1.23240 1.96390 1.20973 0.82281 0.82544 0.87875 1.90523 1.55575 1.48996 1.51675 1.43650 1.05132 1.40920 1.27513 1.19227 1.11090 1.26484 0.92417 0.86840 1.25389 0.94488 0.94980 0.98624 1.69742 1.06723 1.33945 1.37633 0.86971 0.80047 0.78029 0.85159 1.19963 1.21074 1.18052 1.20645 0.99508 0.88037 0.90672 1.20258 0.93541 0.95540 0.98940 1.21218 0.99191 0.92672 0.98987 1.21031 0.96677 0.96386 1.00800 1.21006 0.93607 0.98917 1.01132 1.21050 0.98927 0.93608 1.00986 1.21129 0.96881 0.95895 0.97178 1.20265 0.98745 0.94000 0.95797 1.20959 0.97115 1.00512 0.92775 1.21036 1.00266 0.94498 0.98086 1.21024 1.00346 0.94342 0.98697 1.20966 0.99648 0.99259 0.94055 1.20903 0.99661 0.93833 0.97675 0.91065 0.91496 0.92108 0.73996 0.91144 0.90734 0.90493 0.85620 0.86811 0.86942 0.86693 0.85967 0.85404 0.86457 0.86801 0.86775 0.86567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.07 8.09 37.16 0.30 -1.77 16 2 C 0.18 3.65 0.92 -92.92 -0.09 3.56 16 3 O -0.56 -11.92 11.67 -35.23 -0.41 -12.33 16 4 C 0.48 10.71 5.72 -10.99 -0.06 10.65 16 5 O -0.58 -13.73 14.74 5.55 0.08 -13.65 16 6 N -0.45 -10.31 2.10 -116.10 -0.24 -10.55 16 7 C -0.37 -8.72 6.61 -14.93 -0.10 -8.82 16 8 H 0.11 2.84 4.77 -52.48 -0.25 2.58 16 9 C 0.08 1.82 5.33 -17.47 -0.09 1.73 16 10 N -0.85 -21.40 13.96 55.50 0.77 -20.63 16 11 Si 0.87 19.44 24.96 -169.99 -4.24 15.20 16 12 H -0.27 -5.90 6.74 56.52 0.38 -5.52 16 13 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 14 H -0.26 -5.96 7.11 56.52 0.40 -5.55 16 15 C 0.13 2.89 4.18 -5.19 -0.02 2.87 16 16 C -0.08 -1.62 5.44 -104.62 -0.57 -2.19 16 17 C -0.10 -1.87 9.62 -39.58 -0.38 -2.25 16 18 C -0.13 -2.06 10.05 -39.59 -0.40 -2.46 16 19 C -0.13 -1.92 10.05 -39.58 -0.40 -2.32 16 20 C -0.13 -2.07 10.05 -39.58 -0.40 -2.47 16 21 C -0.09 -1.74 9.69 -39.58 -0.38 -2.13 16 22 C -0.09 -1.67 3.35 -104.62 -0.35 -2.02 16 23 C -0.10 -1.72 8.12 -39.59 -0.32 -2.04 16 24 C -0.12 -1.94 10.05 -39.58 -0.40 -2.34 16 25 C -0.13 -1.93 10.05 -39.58 -0.40 -2.33 16 26 C -0.12 -1.97 10.05 -39.58 -0.40 -2.37 16 27 C -0.10 -1.89 9.02 -39.58 -0.36 -2.24 16 28 H 0.07 1.23 7.94 -51.93 -0.41 0.81 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.40 8.87 5.08 45.56 0.23 9.10 16 32 H 0.28 6.64 8.31 -40.82 -0.34 6.30 16 33 H 0.07 1.63 3.64 -51.93 -0.19 1.44 16 34 H 0.08 1.66 7.42 -51.93 -0.39 1.27 16 35 H 0.13 2.37 7.29 -52.48 -0.38 1.99 16 36 H 0.11 1.50 8.06 -52.48 -0.42 1.07 16 37 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 38 H 0.12 1.60 8.06 -52.48 -0.42 1.17 16 39 H 0.12 2.40 8.06 -52.49 -0.42 1.97 16 40 H 0.13 2.26 7.02 -52.49 -0.37 1.89 16 41 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 42 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 43 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 44 H 0.12 2.20 7.64 -52.49 -0.40 1.80 16 LS Contribution 356.55 15.07 5.37 5.37 Total: -1.00 -26.91 356.55 -8.60 -35.51 By element: Atomic # 1 Polarization: 25.15 SS G_CDS: -5.12 Total: 20.03 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: -4.81 Total: -18.94 kcal Atomic # 7 Polarization: -31.71 SS G_CDS: 0.53 Total: -31.18 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -0.33 Total: -25.99 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -4.24 Total: 15.20 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -26.91 -8.60 -35.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182930860.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.485 kcal (2) G-P(sol) polarization free energy of solvation -26.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds