Wall clock time and date at job start Tue Mar 31 2020 14:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42904 * 109.47229 * 2 1 4 4 C 1.50703 * 109.47383 * 120.00149 * 2 1 3 5 5 O 1.21294 * 119.99381 * 7.22846 * 4 2 1 6 6 N 1.34768 * 120.00341 * 187.23612 * 4 2 1 7 7 C 1.37101 * 119.99954 * 4.61187 * 6 4 2 8 8 H 1.08003 * 119.99993 * 318.11854 * 7 6 4 9 9 C 1.38945 * 120.00166 * 138.12313 * 7 6 4 10 10 N 1.31407 * 120.00168 * 161.93302 * 9 7 6 11 11 Si 1.86808 * 119.99972 * 341.93004 * 9 7 6 12 12 H 1.48506 * 109.46834 * 95.28096 * 11 9 7 13 13 H 1.48493 * 109.47074 * 215.28205 * 11 9 7 14 14 H 1.48495 * 109.46988 * 335.28452 * 11 9 7 15 15 C 1.46502 * 120.00232 * 184.60965 * 6 4 2 16 16 C 1.50700 * 109.46894 * 86.62781 * 15 6 4 17 17 C 1.38238 * 120.00082 * 272.32778 * 16 15 6 18 18 C 1.38238 * 119.99973 * 179.76674 * 17 16 15 19 19 C 1.38227 * 120.00179 * 0.50499 * 18 17 16 20 20 C 1.38242 * 119.99800 * 359.74433 * 19 18 17 21 21 C 1.38232 * 120.00312 * 0.02562 * 20 19 18 22 22 C 1.50701 * 109.47197 * 240.00167 * 2 1 3 23 23 C 1.38231 * 120.00083 * 106.70198 * 22 2 1 24 24 C 1.38234 * 119.99779 * 180.02562 * 23 22 2 25 25 C 1.38241 * 120.00449 * 359.95679 * 24 23 22 26 26 C 1.38235 * 119.99682 * 0.27158 * 25 24 23 27 27 C 1.38238 * 119.99566 * 286.71766 * 22 2 1 28 28 H 1.09000 * 109.46800 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47180 * 299.99800 * 1 2 3 30 30 H 1.09000 * 109.47265 * 60.00198 * 1 2 3 31 31 H 0.96693 * 113.99931 * 180.02562 * 3 2 1 32 32 H 0.97005 * 119.99913 * 179.97438 * 10 9 7 33 33 H 1.08995 * 109.47102 * 206.62616 * 15 6 4 34 34 H 1.08992 * 109.47062 * 326.62880 * 15 6 4 35 35 H 1.08005 * 119.99822 * 359.97438 * 17 16 15 36 36 H 1.08004 * 119.99756 * 180.22879 * 18 17 16 37 37 H 1.07992 * 120.00336 * 179.72521 * 19 18 17 38 38 H 1.08003 * 119.99749 * 179.97438 * 20 19 18 39 39 H 1.07998 * 120.00536 * 179.97438 * 21 20 19 40 40 H 1.07993 * 120.00076 * 359.97438 * 23 22 2 41 41 H 1.07998 * 120.00014 * 179.97438 * 24 23 22 42 42 H 1.07998 * 120.00154 * 180.02562 * 25 24 23 43 43 H 1.07997 * 120.00209 * 179.72843 * 26 25 24 44 44 H 1.07995 * 120.00636 * 0.02562 * 27 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 1.2520 -1.2845 1.9603 6 7 3.3486 -0.7078 1.5199 7 6 4.2186 0.0191 0.7490 8 1 4.1140 0.0228 -0.3260 9 6 5.2350 0.7510 1.3505 10 7 6.2657 1.1509 0.6402 11 14 5.1362 1.1667 3.1691 12 1 5.8933 0.1554 3.9498 13 1 5.7214 2.5115 3.4019 14 1 3.7155 1.1635 3.6011 15 6 3.8498 -1.4817 2.6584 16 6 4.1322 -2.8954 2.2195 17 6 3.1272 -3.8439 2.2547 18 6 3.3850 -5.1396 1.8475 19 6 4.6504 -5.4893 1.4150 20 6 5.6568 -4.5420 1.3846 21 6 5.3979 -3.2453 1.7873 22 6 2.0323 -0.7104 -1.2305 23 6 2.5871 0.0142 -2.2688 24 6 3.0474 -0.6375 -3.3977 25 6 2.9538 -2.0137 -3.4879 26 6 2.3947 -2.7379 -2.4516 27 6 1.9380 -2.0866 -1.3209 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 2.9703 1.4236 -0.0004 32 1 6.9751 1.6622 1.0601 33 1 4.7675 -1.0268 3.0311 34 1 3.1008 -1.4898 3.4501 35 1 2.1397 -3.5718 2.5972 36 1 2.5988 -5.8797 1.8715 37 1 4.8530 -6.5025 1.1011 38 1 6.6457 -4.8154 1.0471 39 1 6.1842 -2.5053 1.7640 40 1 2.6602 1.0893 -2.1984 41 1 3.4805 -0.0714 -4.2091 42 1 3.3138 -2.5228 -4.3697 43 1 2.3175 -3.8126 -2.5239 44 1 1.5040 -2.6526 -0.5100 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182930860.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:30 Heat of formation + Delta-G solvation = -31.743305 kcal Electronic energy + Delta-G solvation = -29133.139825 eV Core-core repulsion = 25401.240428 eV Total energy + Delta-G solvation = -3731.899397 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.79898 -40.20513 -39.37827 -37.42755 -37.00104 -34.18207 -33.08789 -32.44476 -31.74480 -31.65688 -30.18804 -27.85230 -27.07298 -24.75687 -23.43826 -23.39072 -22.78345 -22.13466 -20.72038 -19.73077 -18.57162 -18.18078 -17.45578 -17.31070 -16.78304 -16.26698 -16.10980 -15.89708 -15.75410 -15.49999 -15.13424 -14.91431 -14.54875 -14.39492 -14.25081 -14.19089 -13.91944 -13.59943 -13.42898 -13.35583 -13.27694 -13.05757 -13.01119 -12.70398 -12.42556 -12.28150 -12.01965 -11.99569 -11.90242 -11.74431 -11.59519 -11.08345 -10.39395 -9.83194 -9.78106 -9.71533 -9.65721 -9.43176 -8.54625 -6.23260 0.41731 0.49020 0.54098 0.56570 1.13057 1.27491 1.37881 1.74785 2.12467 2.45388 2.83754 2.93122 3.04314 3.49425 3.70301 3.84294 3.96002 4.02460 4.10437 4.18829 4.19424 4.26400 4.31801 4.33057 4.34515 4.48553 4.65790 4.71689 4.72041 4.77400 4.85203 4.91219 5.09848 5.11712 5.15486 5.19396 5.20739 5.36880 5.60532 5.61238 5.62279 5.65457 5.71963 5.79479 6.03217 6.14745 6.15900 6.17432 6.77495 6.87289 7.31255 7.67357 8.54863 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.008861 B = 0.007927 C = 0.005891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3159.119979 B = 3531.603504 C = 4752.104869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.174 3.826 3 O -0.566 6.566 4 C 0.468 3.532 5 O -0.600 6.600 6 N -0.457 5.457 7 C -0.354 4.354 8 H 0.103 0.897 9 C 0.051 3.949 10 N -0.874 5.874 11 Si 0.909 3.091 12 H -0.264 1.264 13 H -0.280 1.280 14 H -0.275 1.275 15 C 0.132 3.868 16 C -0.103 4.103 17 C -0.115 4.115 18 C -0.124 4.124 19 C -0.116 4.116 20 C -0.125 4.125 21 C -0.113 4.113 22 C -0.102 4.102 23 C -0.113 4.113 24 C -0.122 4.122 25 C -0.121 4.121 26 C -0.121 4.121 27 C -0.119 4.119 28 H 0.076 0.924 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.395 0.605 32 H 0.282 0.718 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.111 0.889 36 H 0.145 0.855 37 H 0.154 0.846 38 H 0.141 0.859 39 H 0.105 0.895 40 H 0.122 0.878 41 H 0.143 0.857 42 H 0.150 0.850 43 H 0.140 0.860 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.734 -9.094 -4.710 10.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.129 3.871 3 O -0.381 6.381 4 C 0.257 3.743 5 O -0.485 6.485 6 N -0.177 5.177 7 C -0.481 4.481 8 H 0.120 0.880 9 C -0.156 4.156 10 N -0.510 5.510 11 Si 0.735 3.265 12 H -0.190 1.190 13 H -0.207 1.207 14 H -0.199 1.199 15 C 0.010 3.990 16 C -0.104 4.104 17 C -0.134 4.134 18 C -0.142 4.142 19 C -0.134 4.134 20 C -0.143 4.143 21 C -0.132 4.132 22 C -0.102 4.102 23 C -0.131 4.131 24 C -0.140 4.140 25 C -0.138 4.138 26 C -0.139 4.139 27 C -0.137 4.137 28 H 0.095 0.905 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.253 0.747 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.129 0.871 36 H 0.162 0.838 37 H 0.172 0.828 38 H 0.159 0.841 39 H 0.123 0.877 40 H 0.140 0.860 41 H 0.161 0.839 42 H 0.168 0.832 43 H 0.157 0.843 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.500 -9.098 -4.349 10.675 hybrid contribution 1.006 0.717 1.248 1.756 sum -2.494 -8.381 -3.101 9.278 Atomic orbital electron populations 1.21509 0.89540 1.03002 1.02768 1.19982 0.95825 0.82155 0.89093 1.86329 1.31111 1.24196 1.96475 1.21459 0.82083 0.82355 0.88375 1.90494 1.55848 1.49763 1.52404 1.43734 1.05237 1.41137 1.27603 1.19121 1.10720 1.26222 0.92055 0.87978 1.25682 0.94410 0.95074 1.00435 1.69768 1.07411 1.35190 1.38600 0.86389 0.78894 0.78149 0.83029 1.18984 1.20665 1.19946 1.20623 0.98635 0.89587 0.90188 1.20118 0.94685 0.94681 1.00895 1.21181 0.98194 0.93909 1.00121 1.21379 0.98099 0.95573 0.99170 1.21450 0.92472 1.00398 0.99074 1.21369 1.00667 0.92456 0.99786 1.21109 0.96056 0.97196 0.98806 1.20142 1.00136 0.94433 0.95518 1.21052 0.97959 1.00464 0.93595 1.21392 0.99349 0.95328 0.97896 1.21444 0.98911 0.94052 0.99426 1.21286 0.98679 1.00652 0.93300 1.20902 1.00813 0.93519 0.98448 0.90550 0.92302 0.90192 0.74725 0.90792 0.91514 0.91457 0.87066 0.83769 0.82823 0.84070 0.87716 0.85967 0.83877 0.83201 0.84260 0.87949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.03 8.09 71.98 0.58 -3.45 16 2 C 0.17 7.22 0.92 -12.29 -0.01 7.21 16 3 O -0.57 -24.80 11.67 -148.98 -1.74 -26.54 16 4 C 0.47 21.78 5.72 87.66 0.50 22.28 16 5 O -0.60 -29.19 14.74 -3.07 -0.05 -29.24 16 6 N -0.46 -21.51 2.10 -639.62 -1.34 -22.85 16 7 C -0.35 -17.38 6.61 84.04 0.56 -16.83 16 8 H 0.10 5.25 4.77 -2.91 -0.01 5.23 16 9 C 0.05 2.55 5.33 84.93 0.45 3.00 16 10 N -0.87 -44.90 13.96 21.66 0.30 -44.59 16 11 Si 0.91 41.01 24.96 68.60 1.71 42.72 16 12 H -0.26 -11.40 6.74 99.48 0.67 -10.72 16 13 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 14 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 15 C 0.13 5.92 4.18 85.63 0.36 6.28 16 16 C -0.10 -4.13 5.44 -19.86 -0.11 -4.24 16 17 C -0.12 -4.19 9.62 22.27 0.21 -3.98 16 18 C -0.12 -3.57 10.05 22.27 0.22 -3.35 16 19 C -0.12 -3.01 10.05 22.27 0.22 -2.79 16 20 C -0.12 -3.73 10.05 22.27 0.22 -3.51 16 21 C -0.11 -4.25 9.69 22.27 0.22 -4.03 16 22 C -0.10 -3.89 3.35 -19.87 -0.07 -3.96 16 23 C -0.11 -4.02 8.12 22.27 0.18 -3.84 16 24 C -0.12 -3.65 10.05 22.27 0.22 -3.42 16 25 C -0.12 -3.30 10.05 22.27 0.22 -3.08 16 26 C -0.12 -3.65 10.05 22.27 0.22 -3.42 16 27 C -0.12 -4.30 9.02 22.27 0.20 -4.09 16 28 H 0.08 2.66 7.94 -2.39 -0.02 2.64 16 29 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 31 H 0.39 18.18 5.08 -74.06 -0.38 17.80 16 32 H 0.28 13.62 8.31 -92.70 -0.77 12.85 16 33 H 0.07 3.03 3.64 -2.39 -0.01 3.02 16 34 H 0.07 3.06 7.42 -2.39 -0.02 3.04 16 35 H 0.11 4.30 7.29 -2.91 -0.02 4.28 16 36 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 37 H 0.15 2.79 8.06 -2.91 -0.02 2.76 16 38 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 39 H 0.10 4.22 8.06 -2.91 -0.02 4.19 16 40 H 0.12 4.39 7.02 -2.91 -0.02 4.37 16 41 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 42 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 43 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 44 H 0.10 3.92 7.64 -2.91 -0.02 3.90 16 Total: -1.00 -59.21 356.55 3.92 -55.29 By element: Atomic # 1 Polarization: 49.83 SS G_CDS: 0.61 Total: 50.44 kcal Atomic # 6 Polarization: -29.64 SS G_CDS: 4.42 Total: -25.22 kcal Atomic # 7 Polarization: -66.41 SS G_CDS: -1.04 Total: -67.45 kcal Atomic # 8 Polarization: -54.00 SS G_CDS: -1.78 Total: -55.78 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 1.71 Total: 42.72 kcal Total: -59.21 3.92 -55.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182930860.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.547 kcal (2) G-P(sol) polarization free energy of solvation -59.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds