Wall clock time and date at job start Tue Mar 31 2020 14:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47041 * 2 1 4 4 C 1.50695 * 109.47206 * 239.99908 * 2 1 3 5 5 O 1.21288 * 119.99972 * 245.32799 * 4 2 1 6 6 N 1.34775 * 120.00240 * 65.33259 * 4 2 1 7 7 C 1.39943 * 120.00375 * 183.87686 * 6 4 2 8 8 C 1.39288 * 119.94748 * 144.73310 * 7 6 4 9 9 C 1.38489 * 120.42661 * 180.02562 * 8 7 6 10 10 C 1.37688 * 120.31968 * 359.97438 * 9 8 7 11 11 C 1.40737 * 119.88831 * 0.02562 * 10 9 8 12 12 C 1.41405 * 120.21366 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00616 * 213.77367 * 12 11 10 14 14 C 1.39934 * 119.99884 * 33.76798 * 12 11 10 15 15 N 1.30833 * 119.99919 * 5.86961 * 14 12 11 16 16 Si 1.86794 * 120.00184 * 185.87030 * 14 12 11 17 17 H 1.48503 * 109.47448 * 60.00117 * 16 14 12 18 18 H 1.48501 * 109.47276 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.46972 * 299.99862 * 16 14 12 20 20 C 1.38242 * 119.94424 * 324.45771 * 7 6 4 21 21 C 1.50696 * 109.46970 * 119.99707 * 2 1 3 22 22 C 1.38265 * 119.94564 * 175.71782 * 21 2 1 23 23 C 1.38146 * 120.06022 * 180.02562 * 22 21 2 24 24 C 1.38730 * 119.93993 * 359.97438 * 23 22 21 25 25 O 1.35902 * 120.05530 * 180.02562 * 24 23 22 26 26 C 1.38733 * 119.89279 * 0.27595 * 24 23 22 27 27 C 1.38153 * 119.93905 * 359.42627 * 26 24 23 28 28 H 1.09000 * 109.47847 * 300.00199 * 1 2 3 29 29 H 1.09006 * 109.47283 * 60.00314 * 1 2 3 30 30 H 1.09004 * 109.47317 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47221 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47012 * 299.99835 * 3 2 1 33 33 H 1.09002 * 109.46929 * 59.99793 * 3 2 1 34 34 H 0.96999 * 119.99714 * 3.86873 * 6 4 2 35 35 H 1.08002 * 119.78947 * 359.97438 * 8 7 6 36 36 H 1.07997 * 119.83779 * 179.97438 * 9 8 7 37 37 H 1.08005 * 120.05518 * 180.02562 * 10 9 8 38 38 H 0.97000 * 120.00372 * 179.97438 * 15 14 12 39 39 H 1.08002 * 120.15842 * 359.97438 * 20 7 6 40 40 H 1.08007 * 119.96913 * 359.97438 * 22 21 2 41 41 H 1.07991 * 120.02928 * 179.97438 * 23 22 21 42 42 H 0.96705 * 114.00092 * 89.99899 * 25 24 23 43 43 H 1.08002 * 120.03476 * 179.72703 * 26 24 23 44 44 H 1.07998 * 119.96837 * 180.27511 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.6479 -1.7498 -1.1217 6 7 1.7977 -0.1907 -2.4516 7 6 2.1927 -0.8903 -3.5975 8 6 1.4117 -0.8352 -4.7495 9 6 1.7929 -1.5241 -5.8888 10 6 2.9494 -2.2712 -5.8951 11 6 3.7486 -2.3362 -4.7385 12 6 4.9374 -3.1018 -4.7371 13 1 5.2540 -3.6061 -3.8361 14 6 5.7037 -3.2062 -5.9033 15 7 5.3844 -2.5051 -6.9608 16 14 7.1824 -4.3466 -5.9503 17 1 6.7419 -5.7397 -5.6847 18 1 7.8200 -4.2754 -7.2896 19 1 8.1613 -3.9308 -4.9139 20 6 3.3602 -1.6304 -3.5860 21 6 2.0323 -0.7103 1.2305 22 6 3.3887 -0.9141 1.4044 23 6 3.8517 -1.5654 2.5313 24 6 2.9544 -2.0148 3.4891 25 8 3.4073 -2.6554 4.5988 26 6 1.5934 -1.8138 3.3098 27 6 1.1360 -1.1564 2.1841 28 1 -0.3635 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1299 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.3550 0.6682 -2.5363 35 1 0.5026 -0.2522 -4.7541 36 1 1.1800 -1.4750 -6.7767 37 1 3.2428 -2.8064 -6.7862 38 1 5.9158 -2.5771 -7.7691 39 1 3.9689 -1.6698 -2.6947 40 1 4.0869 -0.5643 0.6582 41 1 4.9113 -1.7246 2.6665 42 1 3.6006 -2.0669 5.3414 43 1 0.8925 -2.1666 4.0518 44 1 0.0769 -0.9958 2.0462 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183782886.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:22 Heat of formation + Delta-G solvation = -57.872473 kcal Electronic energy + Delta-G solvation = -26899.592563 eV Core-core repulsion = 23166.560121 eV Total energy + Delta-G solvation = -3733.032442 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.92586 -40.50253 -39.18167 -37.93860 -36.21765 -35.70580 -34.63296 -32.08568 -31.73627 -30.27162 -29.37785 -28.33767 -27.24702 -25.18953 -23.72175 -23.46232 -22.81031 -22.07900 -20.37924 -19.57011 -19.38965 -18.10712 -17.39811 -17.17976 -16.78686 -16.52767 -16.44759 -16.02341 -15.93371 -15.37349 -15.21484 -14.88912 -14.67501 -14.42315 -14.12411 -13.89773 -13.61371 -13.48964 -13.32913 -12.98551 -12.93818 -12.90830 -12.85710 -12.85295 -12.79532 -12.20238 -12.13495 -11.99818 -11.94731 -11.50942 -11.33610 -11.17683 -10.82412 -10.47954 -9.91473 -9.45553 -9.33020 -8.75796 -8.54262 -6.41582 0.22713 0.41105 0.86997 0.99418 1.33687 1.45514 1.45906 1.78973 2.18398 2.21691 2.73742 2.77329 3.26955 3.44878 3.64872 3.71968 3.92860 4.01051 4.07815 4.12790 4.42175 4.46606 4.59552 4.61161 4.73274 4.78125 4.84009 4.85370 4.95673 5.03409 5.05092 5.10349 5.12467 5.18042 5.23488 5.26533 5.32545 5.37526 5.45107 5.62788 5.77186 5.84876 5.89748 6.04970 6.11837 6.35365 6.64302 6.69288 6.86384 6.94025 7.00028 7.34330 8.39723 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013002 B = 0.003441 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.965093 B = 8135.504335 C = 9826.537779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.029 4.029 3 C -0.138 4.138 4 C 0.508 3.492 5 O -0.560 6.560 6 N -0.653 5.653 7 C 0.152 3.848 8 C -0.237 4.237 9 C -0.096 4.096 10 C -0.185 4.185 11 C 0.088 3.912 12 C -0.510 4.510 13 H 0.058 0.942 14 C 0.036 3.964 15 N -0.837 5.837 16 Si 0.981 3.019 17 H -0.263 1.263 18 H -0.260 1.260 19 H -0.266 1.266 20 C -0.226 4.226 21 C -0.082 4.082 22 C -0.087 4.087 23 C -0.164 4.164 24 C 0.097 3.903 25 O -0.510 6.510 26 C -0.150 4.150 27 C -0.096 4.096 28 H 0.105 0.895 29 H 0.082 0.918 30 H 0.054 0.946 31 H 0.047 0.953 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.420 0.580 35 H 0.137 0.863 36 H 0.125 0.875 37 H 0.101 0.899 38 H 0.286 0.714 39 H 0.087 0.913 40 H 0.102 0.898 41 H 0.127 0.873 42 H 0.410 0.590 43 H 0.152 0.848 44 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.202 10.212 17.221 22.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.033 4.033 3 C -0.195 4.195 4 C 0.296 3.704 5 O -0.437 6.437 6 N -0.299 5.299 7 C 0.059 3.941 8 C -0.258 4.258 9 C -0.115 4.115 10 C -0.205 4.205 11 C 0.085 3.915 12 C -0.541 4.541 13 H 0.076 0.924 14 C -0.177 4.177 15 N -0.464 5.464 16 Si 0.802 3.198 17 H -0.187 1.187 18 H -0.184 1.184 19 H -0.191 1.191 20 C -0.248 4.248 21 C -0.083 4.083 22 C -0.106 4.106 23 C -0.182 4.182 24 C 0.053 3.947 25 O -0.323 6.323 26 C -0.169 4.169 27 C -0.114 4.114 28 H 0.124 0.876 29 H 0.101 0.899 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.102 0.898 33 H 0.116 0.884 34 H 0.258 0.742 35 H 0.155 0.845 36 H 0.143 0.857 37 H 0.119 0.881 38 H 0.097 0.903 39 H 0.105 0.895 40 H 0.120 0.880 41 H 0.145 0.855 42 H 0.269 0.731 43 H 0.169 0.831 44 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -9.775 9.056 16.769 21.419 hybrid contribution 1.285 -0.108 -0.150 1.298 sum -8.490 8.947 16.620 20.697 Atomic orbital electron populations 1.22024 0.89308 1.03169 1.05407 1.19727 0.99195 0.96491 0.87846 1.21955 1.01139 0.91352 1.05074 1.21378 0.78774 0.85015 0.85247 1.90764 1.40586 1.25628 1.86712 1.43314 1.59663 1.23262 1.03700 1.17551 0.93143 0.96411 0.87036 1.20563 1.02087 1.09966 0.93174 1.20880 0.96121 0.96796 0.97679 1.21327 0.95532 1.04421 0.99235 1.17833 0.92166 0.89990 0.91508 1.19653 1.07476 1.29546 0.97443 0.92382 1.26608 1.01504 0.95761 0.93825 1.69817 1.38701 1.34600 1.03330 0.85282 0.77112 0.78715 0.78698 1.18722 1.18358 1.19072 1.21171 0.98703 1.05690 0.99235 1.19531 0.93228 1.00118 0.95405 1.20832 0.95861 0.97850 0.96012 1.21495 1.00581 1.00448 0.95708 1.18590 0.91924 0.95121 0.89048 1.84782 1.87033 1.37179 1.23356 1.21631 0.94852 1.00375 1.00015 1.21316 1.00842 0.96568 0.92655 0.87621 0.89933 0.92705 0.93395 0.89796 0.88423 0.74177 0.84545 0.85688 0.88086 0.90311 0.89515 0.87953 0.85496 0.73124 0.83069 0.82254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 7.10 71.98 0.51 -1.69 16 2 C -0.03 -0.67 0.73 -53.68 -0.04 -0.71 16 3 C -0.14 -2.34 8.18 71.98 0.59 -1.75 16 4 C 0.51 17.59 6.06 87.66 0.53 18.12 16 5 O -0.56 -26.03 12.48 -3.05 -0.04 -26.07 16 6 N -0.65 -21.81 5.19 -303.65 -1.58 -23.38 16 7 C 0.15 6.76 6.28 38.10 0.24 7.00 16 8 C -0.24 -9.74 9.97 22.58 0.23 -9.51 16 9 C -0.10 -4.37 10.02 22.20 0.22 -4.14 16 10 C -0.19 -10.11 8.63 22.75 0.20 -9.91 16 11 C 0.09 5.14 5.51 -21.31 -0.12 5.02 16 12 C -0.51 -30.58 9.04 23.46 0.21 -30.37 16 13 H 0.06 3.52 7.85 -2.91 -0.02 3.49 16 14 C 0.04 1.94 5.31 85.25 0.45 2.40 16 15 N -0.84 -46.13 10.94 21.82 0.24 -45.89 16 16 Si 0.98 41.82 29.56 68.60 2.03 43.85 16 17 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 18 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 19 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 20 C -0.23 -12.39 8.43 22.85 0.19 -12.20 16 21 C -0.08 -2.11 4.39 -19.85 -0.09 -2.19 16 22 C -0.09 -2.60 7.92 22.25 0.18 -2.42 16 23 C -0.16 -4.50 9.99 22.37 0.22 -4.28 16 24 C 0.10 2.34 6.70 22.51 0.15 2.49 16 25 O -0.51 -10.43 13.50 -92.45 -1.25 -11.68 16 26 C -0.15 -3.12 9.99 22.37 0.22 -2.90 16 27 C -0.10 -1.99 8.98 22.26 0.20 -1.79 16 28 H 0.11 0.96 7.31 -2.39 -0.02 0.94 16 29 H 0.08 1.03 8.08 -2.38 -0.02 1.01 16 30 H 0.05 1.01 7.72 -2.39 -0.02 0.99 16 31 H 0.05 0.99 7.64 -2.39 -0.02 0.97 16 32 H 0.08 1.10 7.21 -2.39 -0.02 1.09 16 33 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.42 9.93 7.77 -92.71 -0.72 9.21 16 35 H 0.14 4.34 8.06 -2.91 -0.02 4.32 16 36 H 0.13 4.79 8.06 -2.91 -0.02 4.77 16 37 H 0.10 5.76 6.43 -2.91 -0.02 5.74 16 38 H 0.29 14.26 8.30 -92.71 -0.77 13.49 16 39 H 0.09 5.07 6.27 -2.91 -0.02 5.05 16 40 H 0.10 3.38 7.58 -2.91 -0.02 3.36 16 41 H 0.13 3.28 8.06 -2.91 -0.02 3.25 16 42 H 0.41 3.75 9.06 -74.05 -0.67 3.08 16 43 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 44 H 0.16 2.27 5.89 -2.91 -0.02 2.25 16 Total: -1.00 -78.99 363.70 3.16 -75.83 By element: Atomic # 1 Polarization: 36.53 SS G_CDS: -0.34 Total: 36.19 kcal Atomic # 6 Polarization: -52.94 SS G_CDS: 4.10 Total: -48.84 kcal Atomic # 7 Polarization: -67.94 SS G_CDS: -1.34 Total: -69.28 kcal Atomic # 8 Polarization: -36.46 SS G_CDS: -1.29 Total: -37.75 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Total: -78.99 3.16 -75.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183782886.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.954 kcal (2) G-P(sol) polarization free energy of solvation -78.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds