Wall clock time and date at job start Tue Mar 31 2020 13:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38285 * 119.96862 * 2 1 4 4 C 1.38248 * 120.10932 * 180.28013 * 3 2 1 5 5 C 1.50694 * 119.97340 * 179.76600 * 4 3 2 6 6 C 1.38164 * 120.05302 * 359.49493 * 4 3 2 7 7 C 1.50697 * 120.02812 * 180.27618 * 6 4 3 8 8 N 1.46509 * 109.47440 * 89.99668 * 7 6 4 9 9 C 1.34774 * 120.00297 * 180.02562 * 8 7 6 10 10 O 1.21550 * 120.00031 * 0.02562 * 9 8 7 11 11 C 1.47886 * 119.99804 * 179.97438 * 9 8 7 12 12 C 1.39915 * 120.02536 * 359.72347 * 11 9 8 13 13 C 1.38331 * 120.35504 * 179.73901 * 12 11 9 14 14 C 1.37755 * 120.41323 * 0.56122 * 13 12 11 15 15 C 1.40754 * 120.03703 * 359.69940 * 14 13 12 16 16 C 1.41432 * 120.17535 * 180.02562 * 15 14 13 17 17 H 1.08006 * 120.00042 * 24.43353 * 16 15 14 18 18 C 1.39933 * 120.00019 * 204.43944 * 16 15 14 19 19 N 1.30828 * 119.99810 * 17.87380 * 18 16 15 20 20 Si 1.86797 * 120.00154 * 197.88065 * 18 16 15 21 21 H 1.48504 * 109.47560 * 59.99269 * 20 18 16 22 22 H 1.48505 * 109.47365 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46858 * 299.99580 * 20 18 16 24 24 C 1.38993 * 120.02096 * 180.02562 * 11 9 8 25 25 C 1.38711 * 119.94767 * 0.24869 * 6 4 3 26 26 O 1.35900 * 120.06083 * 180.02562 * 25 6 4 27 27 C 1.38123 * 119.97337 * 179.77218 * 2 1 3 28 28 H 1.09007 * 109.46646 * 270.23079 * 1 2 3 29 29 H 1.08991 * 109.47469 * 30.22919 * 1 2 3 30 30 H 1.09001 * 109.47349 * 150.23110 * 1 2 3 31 31 H 1.08000 * 119.94790 * 0.04892 * 3 2 1 32 32 H 1.09002 * 109.47152 * 269.72441 * 5 4 3 33 33 H 1.09001 * 109.47113 * 29.72425 * 5 4 3 34 34 H 1.08997 * 109.47197 * 149.72615 * 5 4 3 35 35 H 1.09007 * 109.47334 * 209.99454 * 7 6 4 36 36 H 1.09004 * 109.47200 * 329.99716 * 7 6 4 37 37 H 0.96999 * 119.99402 * 359.97438 * 8 7 6 38 38 H 1.07998 * 119.82189 * 0.02562 * 12 11 9 39 39 H 1.08003 * 119.79475 * 180.28294 * 13 12 11 40 40 H 1.07998 * 119.98182 * 179.71752 * 14 13 12 41 41 H 0.97007 * 119.99928 * 180.02562 * 19 18 16 42 42 H 1.08001 * 120.20537 * 359.95301 * 24 11 9 43 43 H 0.96700 * 113.99841 * 89.99694 * 26 25 6 44 44 H 1.08003 * 120.02359 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5803 1.2014 -0.0058 5 6 4.3299 2.5086 -0.0112 6 6 4.2752 0.0072 -0.0012 7 6 5.7821 0.0116 -0.0013 8 7 6.2706 0.0186 1.3800 9 6 7.5957 0.0239 1.6262 10 8 8.3855 0.0235 0.7022 11 6 8.0887 0.0315 3.0204 12 6 7.1799 0.0390 4.0843 13 6 7.6335 0.0407 5.3911 14 6 8.9845 0.0467 5.6604 15 6 9.9137 0.0447 4.6031 16 6 11.3014 0.0504 4.8762 17 1 11.6680 -0.3311 5.8178 18 6 12.1993 0.5502 3.9265 19 7 11.7681 1.3185 2.9593 20 14 14.0137 0.1204 4.0395 21 1 14.1800 -1.3526 3.9503 22 1 14.7467 0.7695 2.9230 23 1 14.5566 0.6022 5.3351 24 6 9.4551 0.0376 3.2749 25 6 3.5846 -1.1958 0.0042 26 8 4.2658 -2.3717 0.0093 27 6 2.1971 -1.1965 0.0048 28 1 -0.3633 0.0041 1.0278 29 1 -0.3634 0.8878 -0.5173 30 1 -0.3634 -0.8920 -0.5102 31 1 1.6565 2.1325 0.0008 32 1 4.5106 2.8197 -1.0401 33 1 3.7386 3.2686 0.4996 34 1 5.2827 2.3832 0.5031 35 1 6.1481 -0.8794 -0.5115 36 1 6.1429 0.9006 -0.5187 37 1 5.6403 0.0200 2.1173 38 1 6.1187 0.0388 3.8841 39 1 6.9241 0.0418 6.2054 40 1 9.3309 0.0526 6.6833 41 1 12.3905 1.6647 2.3007 42 1 10.1601 0.0360 2.4567 43 1 4.4630 -2.7081 0.8942 44 1 1.6570 -2.1318 0.0089 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188687403.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:00 Heat of formation + Delta-G solvation = -51.419352 kcal Electronic energy + Delta-G solvation = -26403.223534 eV Core-core repulsion = 22670.470920 eV Total energy + Delta-G solvation = -3732.752614 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.45138 -39.01200 -37.15836 -37.02454 -35.08890 -33.77749 -33.06357 -30.99516 -30.24127 -29.44853 -28.29926 -27.28543 -25.39783 -24.61074 -22.33875 -22.04512 -20.96513 -20.42223 -19.55362 -17.95813 -17.79423 -16.64678 -16.47901 -15.64865 -15.53494 -15.15167 -14.87112 -14.54060 -14.40933 -14.05024 -13.69958 -13.59770 -13.37391 -13.19751 -12.95780 -12.83705 -12.74755 -12.62335 -12.47907 -12.19868 -11.69090 -11.58009 -11.51984 -11.41915 -11.15251 -11.08119 -10.75682 -10.56272 -10.49857 -10.04529 -9.70689 -9.21889 -9.16716 -8.75069 -8.65785 -8.60648 -7.63951 -7.53187 -6.80912 -4.42282 0.97531 1.08709 2.20787 2.81525 3.07271 3.08956 3.16283 3.25157 3.86633 3.88961 3.91931 4.05369 4.50615 4.55440 4.63410 4.73828 4.95659 5.07205 5.16462 5.29022 5.31549 5.48391 5.54026 5.57835 5.60933 5.64779 5.75325 5.82797 5.94578 6.04362 6.11128 6.18329 6.26084 6.29541 6.43881 6.63529 6.71077 6.83506 6.97846 7.01006 7.20479 7.37199 7.52208 7.69204 7.75124 7.91835 8.08971 8.18485 8.49587 8.79301 8.82618 8.95171 10.13694 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.021876 B = 0.002661 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.653043 B =10521.134605 C =10805.110206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.064 4.064 3 C -0.134 4.134 4 C -0.045 4.045 5 C -0.124 4.124 6 C -0.136 4.136 7 C 0.164 3.836 8 N -0.732 5.732 9 C 0.564 3.436 10 O -0.544 6.544 11 C -0.127 4.127 12 C -0.219 4.219 13 C -0.097 4.097 14 C -0.213 4.213 15 C 0.099 3.901 16 C -0.460 4.460 17 H 0.081 0.919 18 C 0.073 3.927 19 N -0.783 5.783 20 Si 0.911 3.089 21 H -0.263 1.263 22 H -0.277 1.277 23 H -0.265 1.265 24 C -0.093 4.093 25 C 0.133 3.867 26 O -0.495 6.495 27 C -0.157 4.157 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.125 0.875 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.397 0.603 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.285 0.715 42 H 0.134 0.866 43 H 0.394 0.606 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.582 -0.787 -4.874 19.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.064 4.064 3 C -0.152 4.152 4 C -0.045 4.045 5 C -0.181 4.181 6 C -0.137 4.137 7 C 0.041 3.959 8 N -0.386 5.386 9 C 0.354 3.646 10 O -0.422 6.422 11 C -0.130 4.130 12 C -0.239 4.239 13 C -0.116 4.116 14 C -0.233 4.233 15 C 0.096 3.904 16 C -0.489 4.489 17 H 0.099 0.901 18 C -0.146 4.146 19 N -0.407 5.407 20 Si 0.735 3.265 21 H -0.187 1.187 22 H -0.202 1.202 23 H -0.190 1.190 24 C -0.113 4.113 25 C 0.088 3.912 26 O -0.305 6.305 27 C -0.175 4.175 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.143 0.857 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.233 0.767 38 H 0.106 0.894 39 H 0.110 0.890 40 H 0.114 0.886 41 H 0.096 0.904 42 H 0.152 0.848 43 H 0.251 0.749 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -17.934 -0.582 -6.384 19.046 hybrid contribution 0.416 -0.186 0.862 0.975 sum -17.518 -0.768 -5.522 18.384 Atomic orbital electron populations 1.20807 0.90888 1.02894 1.02521 1.19779 0.96095 0.92572 0.97943 1.20917 0.93280 0.97695 1.03355 1.19744 0.93501 0.94708 0.96566 1.20928 1.00847 0.93448 1.02840 1.20134 0.95865 0.92431 1.05280 1.19982 0.87938 1.03179 0.84838 1.46004 1.07539 1.77787 1.07301 1.18865 0.81042 0.74668 0.90009 1.90705 1.55335 1.49809 1.46364 1.19459 0.95157 1.08291 0.90089 1.20313 0.95997 1.14939 0.92646 1.20427 0.95240 1.00897 0.94989 1.21094 0.92574 1.11828 0.97771 1.17597 0.93298 0.88732 0.90739 1.19560 0.90827 1.36080 1.02391 0.90102 1.25968 1.01885 0.92642 0.94122 1.69783 1.37996 1.21475 1.11407 0.86323 0.81314 0.80078 0.78799 1.18702 1.20209 1.18960 1.21646 0.92454 0.99226 0.97939 1.18285 0.89599 0.84956 0.98399 1.84777 1.76211 1.35800 1.33750 1.21239 0.93210 0.98376 1.04721 0.90926 0.91354 0.91447 0.85729 0.90703 0.91185 0.90400 0.90412 0.90837 0.76733 0.89401 0.88972 0.88645 0.90352 0.84817 0.74935 0.85459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 10.01 36.01 0.36 -0.38 16 2 C -0.06 -0.59 5.88 -104.64 -0.62 -1.21 16 3 C -0.13 -1.31 9.35 -39.56 -0.37 -1.68 16 4 C -0.04 -0.50 5.88 -104.65 -0.62 -1.12 16 5 C -0.12 -1.29 9.19 36.00 0.33 -0.96 16 6 C -0.14 -1.71 5.26 -104.48 -0.55 -2.26 16 7 C 0.16 2.45 4.77 -5.19 -0.02 2.43 16 8 N -0.73 -12.08 5.45 -62.41 -0.34 -12.42 16 9 C 0.56 12.24 7.77 -12.31 -0.10 12.15 16 10 O -0.54 -13.69 16.33 5.32 0.09 -13.60 16 11 C -0.13 -2.96 5.87 -105.04 -0.62 -3.58 16 12 C -0.22 -4.54 9.55 -38.92 -0.37 -4.91 16 13 C -0.10 -2.05 10.01 -39.72 -0.40 -2.45 16 14 C -0.21 -5.02 9.78 -38.81 -0.38 -5.40 16 15 C 0.10 2.60 5.57 -106.87 -0.60 2.01 16 16 C -0.46 -12.04 9.05 -37.73 -0.34 -12.38 16 17 H 0.08 2.00 7.91 -52.48 -0.42 1.59 16 18 C 0.07 1.85 5.14 -17.34 -0.09 1.76 16 19 N -0.78 -20.71 10.95 55.55 0.61 -20.10 16 20 Si 0.91 18.77 29.59 -169.99 -5.03 13.74 16 21 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 22 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 23 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 24 C -0.09 -2.46 8.24 -38.44 -0.32 -2.78 16 25 C 0.13 1.58 6.68 -39.22 -0.26 1.32 16 26 O -0.49 -5.85 12.55 -19.43 -0.24 -6.10 16 27 C -0.16 -1.61 9.64 -39.43 -0.38 -1.99 16 28 H 0.07 0.42 8.14 -51.92 -0.42 -0.01 16 29 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 30 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 31 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 34 H 0.08 0.96 6.66 -51.93 -0.35 0.62 16 35 H 0.08 1.27 7.53 -51.93 -0.39 0.88 16 36 H 0.07 1.14 6.70 -51.93 -0.35 0.79 16 37 H 0.40 5.82 6.48 -40.82 -0.26 5.55 16 38 H 0.09 1.51 6.38 -52.49 -0.33 1.18 16 39 H 0.09 1.65 8.06 -52.48 -0.42 1.22 16 40 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 41 H 0.29 6.96 8.30 -40.82 -0.34 6.62 16 42 H 0.13 3.85 5.74 -52.49 -0.30 3.55 16 43 H 0.39 3.32 9.06 45.56 0.41 3.74 16 44 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 LS Contribution 371.37 15.07 5.60 5.60 Total: -1.00 -30.81 371.37 -9.57 -40.38 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -4.92 Total: 13.93 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: -5.33 Total: -21.43 kcal Atomic # 7 Polarization: -32.79 SS G_CDS: 0.27 Total: -32.52 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -0.16 Total: -19.70 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.81 -9.57 -40.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188687403.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.041 kcal (2) G-P(sol) polarization free energy of solvation -30.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds