Wall clock time and date at job start Tue Mar 31 2020 13:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38285 * 119.96862 * 2 1 4 4 C 1.38248 * 120.10932 * 180.28013 * 3 2 1 5 5 C 1.50694 * 119.97340 * 179.76600 * 4 3 2 6 6 C 1.38164 * 120.05302 * 359.49493 * 4 3 2 7 7 C 1.50697 * 120.02812 * 180.27618 * 6 4 3 8 8 N 1.46509 * 109.47440 * 89.99668 * 7 6 4 9 9 C 1.34774 * 120.00297 * 180.02562 * 8 7 6 10 10 O 1.21550 * 120.00031 * 0.02562 * 9 8 7 11 11 C 1.47886 * 119.99804 * 179.97438 * 9 8 7 12 12 C 1.39915 * 120.02536 * 359.72347 * 11 9 8 13 13 C 1.38331 * 120.35504 * 179.73901 * 12 11 9 14 14 C 1.37755 * 120.41323 * 0.56122 * 13 12 11 15 15 C 1.40754 * 120.03703 * 359.69940 * 14 13 12 16 16 C 1.41432 * 120.17535 * 180.02562 * 15 14 13 17 17 H 1.08006 * 120.00042 * 24.43353 * 16 15 14 18 18 C 1.39933 * 120.00019 * 204.43944 * 16 15 14 19 19 N 1.30828 * 119.99810 * 17.87380 * 18 16 15 20 20 Si 1.86797 * 120.00154 * 197.88065 * 18 16 15 21 21 H 1.48504 * 109.47560 * 59.99269 * 20 18 16 22 22 H 1.48505 * 109.47365 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46858 * 299.99580 * 20 18 16 24 24 C 1.38993 * 120.02096 * 180.02562 * 11 9 8 25 25 C 1.38711 * 119.94767 * 0.24869 * 6 4 3 26 26 O 1.35900 * 120.06083 * 180.02562 * 25 6 4 27 27 C 1.38123 * 119.97337 * 179.77218 * 2 1 3 28 28 H 1.09007 * 109.46646 * 270.23079 * 1 2 3 29 29 H 1.08991 * 109.47469 * 30.22919 * 1 2 3 30 30 H 1.09001 * 109.47349 * 150.23110 * 1 2 3 31 31 H 1.08000 * 119.94790 * 0.04892 * 3 2 1 32 32 H 1.09002 * 109.47152 * 269.72441 * 5 4 3 33 33 H 1.09001 * 109.47113 * 29.72425 * 5 4 3 34 34 H 1.08997 * 109.47197 * 149.72615 * 5 4 3 35 35 H 1.09007 * 109.47334 * 209.99454 * 7 6 4 36 36 H 1.09004 * 109.47200 * 329.99716 * 7 6 4 37 37 H 0.96999 * 119.99402 * 359.97438 * 8 7 6 38 38 H 1.07998 * 119.82189 * 0.02562 * 12 11 9 39 39 H 1.08003 * 119.79475 * 180.28294 * 13 12 11 40 40 H 1.07998 * 119.98182 * 179.71752 * 14 13 12 41 41 H 0.97007 * 119.99928 * 180.02562 * 19 18 16 42 42 H 1.08001 * 120.20537 * 359.95301 * 24 11 9 43 43 H 0.96700 * 113.99841 * 89.99694 * 26 25 6 44 44 H 1.08003 * 120.02359 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5803 1.2014 -0.0058 5 6 4.3299 2.5086 -0.0112 6 6 4.2752 0.0072 -0.0012 7 6 5.7821 0.0116 -0.0013 8 7 6.2706 0.0186 1.3800 9 6 7.5957 0.0239 1.6262 10 8 8.3855 0.0235 0.7022 11 6 8.0887 0.0315 3.0204 12 6 7.1799 0.0390 4.0843 13 6 7.6335 0.0407 5.3911 14 6 8.9845 0.0467 5.6604 15 6 9.9137 0.0447 4.6031 16 6 11.3014 0.0504 4.8762 17 1 11.6680 -0.3311 5.8178 18 6 12.1993 0.5502 3.9265 19 7 11.7681 1.3185 2.9593 20 14 14.0137 0.1204 4.0395 21 1 14.1800 -1.3526 3.9503 22 1 14.7467 0.7695 2.9230 23 1 14.5566 0.6022 5.3351 24 6 9.4551 0.0376 3.2749 25 6 3.5846 -1.1958 0.0042 26 8 4.2658 -2.3717 0.0093 27 6 2.1971 -1.1965 0.0048 28 1 -0.3633 0.0041 1.0278 29 1 -0.3634 0.8878 -0.5173 30 1 -0.3634 -0.8920 -0.5102 31 1 1.6565 2.1325 0.0008 32 1 4.5106 2.8197 -1.0401 33 1 3.7386 3.2686 0.4996 34 1 5.2827 2.3832 0.5031 35 1 6.1481 -0.8794 -0.5115 36 1 6.1429 0.9006 -0.5187 37 1 5.6403 0.0200 2.1173 38 1 6.1187 0.0388 3.8841 39 1 6.9241 0.0418 6.2054 40 1 9.3309 0.0526 6.6833 41 1 12.3905 1.6647 2.3007 42 1 10.1601 0.0360 2.4567 43 1 4.4630 -2.7081 0.8942 44 1 1.6570 -2.1318 0.0089 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188687403.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:59 Heat of formation + Delta-G solvation = -70.549112 kcal Electronic energy + Delta-G solvation = -26404.053063 eV Core-core repulsion = 22670.470920 eV Total energy + Delta-G solvation = -3733.582143 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.45444 -40.59603 -38.81653 -38.00518 -36.35196 -35.60177 -34.20943 -32.23653 -31.60573 -31.27596 -29.32886 -28.07635 -27.21444 -25.76308 -23.84044 -23.02540 -22.77040 -21.38590 -21.16540 -19.57574 -18.80225 -18.08234 -17.54428 -17.21489 -16.89400 -16.56753 -16.25530 -15.93061 -15.89011 -15.26586 -15.06837 -14.74148 -14.41710 -14.36596 -14.26687 -14.04863 -13.96982 -13.72307 -13.50062 -13.46804 -13.12215 -12.93871 -12.80622 -12.54047 -12.38053 -12.34862 -12.20952 -12.19239 -11.91456 -11.52744 -11.41398 -11.06936 -10.87023 -10.20077 -9.57353 -9.50173 -9.47960 -9.39097 -8.67155 -6.38561 0.12631 0.28647 0.37226 1.00856 1.35842 1.47574 1.50263 2.08824 2.18673 2.20511 2.67609 2.78283 3.22892 3.58189 3.69296 3.77033 3.96900 4.02366 4.07318 4.35425 4.40772 4.48872 4.57963 4.58177 4.63018 4.65931 4.72599 4.83807 4.87931 4.90914 5.01612 5.08144 5.14268 5.18629 5.29445 5.30853 5.35664 5.38221 5.51387 5.52886 5.60457 5.85775 5.89219 5.92067 6.04982 6.28098 6.49188 6.66395 6.75370 6.87291 6.94268 7.27781 8.29359 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.021876 B = 0.002661 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.653043 B =10521.134605 C =10805.110206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.057 4.057 3 C -0.135 4.135 4 C -0.049 4.049 5 C -0.123 4.123 6 C -0.156 4.156 7 C 0.172 3.828 8 N -0.704 5.704 9 C 0.561 3.439 10 O -0.589 6.589 11 C -0.136 4.136 12 C -0.197 4.197 13 C -0.094 4.094 14 C -0.217 4.217 15 C 0.067 3.933 16 C -0.497 4.497 17 H 0.085 0.915 18 C 0.029 3.971 19 N -0.825 5.825 20 Si 0.982 3.018 21 H -0.261 1.261 22 H -0.273 1.273 23 H -0.251 1.251 24 C -0.132 4.132 25 C 0.124 3.876 26 O -0.510 6.510 27 C -0.162 4.162 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.149 0.851 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.410 0.590 38 H 0.133 0.867 39 H 0.139 0.861 40 H 0.109 0.891 41 H 0.286 0.714 42 H 0.098 0.902 43 H 0.406 0.594 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.110 -0.741 -3.807 22.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.057 4.057 3 C -0.153 4.153 4 C -0.050 4.050 5 C -0.179 4.179 6 C -0.157 4.157 7 C 0.049 3.951 8 N -0.356 5.356 9 C 0.351 3.649 10 O -0.470 6.470 11 C -0.139 4.139 12 C -0.216 4.216 13 C -0.112 4.112 14 C -0.237 4.237 15 C 0.065 3.935 16 C -0.526 4.526 17 H 0.103 0.897 18 C -0.186 4.186 19 N -0.450 5.450 20 Si 0.803 3.197 21 H -0.185 1.185 22 H -0.197 1.197 23 H -0.175 1.175 24 C -0.152 4.152 25 C 0.079 3.921 26 O -0.322 6.322 27 C -0.180 4.180 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.167 0.833 32 H 0.099 0.901 33 H 0.108 0.892 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.248 0.752 38 H 0.151 0.849 39 H 0.157 0.843 40 H 0.127 0.873 41 H 0.097 0.903 42 H 0.116 0.884 43 H 0.264 0.736 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -21.526 -0.542 -5.285 22.172 hybrid contribution 1.207 -0.217 0.539 1.339 sum -20.320 -0.759 -4.746 20.880 Atomic orbital electron populations 1.20885 0.88540 1.04021 1.03588 1.20174 0.97769 0.91953 0.95831 1.21198 0.92550 0.99036 1.02497 1.19870 0.94404 0.94229 0.96502 1.20922 0.99914 0.93893 1.03189 1.19932 0.93868 0.93646 1.08208 1.19900 0.90120 1.01867 0.83240 1.45755 1.05755 1.75366 1.08766 1.18774 0.82395 0.74662 0.89048 1.90680 1.56915 1.52106 1.47328 1.19734 0.94656 1.07644 0.91901 1.20797 0.97723 1.11349 0.91776 1.20914 0.94947 0.98920 0.96438 1.21409 0.93621 1.10906 0.97734 1.17944 0.94326 0.89790 0.91434 1.19846 0.91660 1.37805 1.03321 0.89709 1.26864 1.06455 0.91901 0.93392 1.69888 1.39509 1.23073 1.12541 0.85248 0.75544 0.79638 0.79309 1.18525 1.19724 1.17508 1.21452 0.93541 1.02883 0.97357 1.18453 0.90399 0.84540 0.98754 1.84746 1.76471 1.35964 1.35043 1.21448 0.92454 0.99635 1.04474 0.89720 0.90055 0.90608 0.83304 0.90145 0.89171 0.92831 0.92172 0.91688 0.75242 0.84924 0.84344 0.87300 0.90302 0.88359 0.73556 0.83948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.00 10.01 71.24 0.71 -0.29 16 2 C -0.06 -0.86 5.88 -19.88 -0.12 -0.98 16 3 C -0.14 -2.18 9.35 22.28 0.21 -1.97 16 4 C -0.05 -1.02 5.88 -19.88 -0.12 -1.13 16 5 C -0.12 -2.39 9.19 71.23 0.65 -1.73 16 6 C -0.16 -3.76 5.26 -19.77 -0.10 -3.87 16 7 C 0.17 5.22 4.77 85.63 0.41 5.63 16 8 N -0.70 -23.05 5.45 -469.64 -2.56 -25.62 16 9 C 0.56 25.09 7.77 86.80 0.67 25.76 16 10 O -0.59 -31.40 16.33 -3.87 -0.06 -31.47 16 11 C -0.14 -6.47 5.87 -20.14 -0.12 -6.59 16 12 C -0.20 -7.68 9.55 22.70 0.22 -7.46 16 13 C -0.09 -3.70 10.01 22.18 0.22 -3.47 16 14 C -0.22 -10.10 9.78 22.77 0.22 -9.87 16 15 C 0.07 3.67 5.57 -21.32 -0.12 3.55 16 16 C -0.50 -27.18 9.05 23.47 0.21 -26.97 16 17 H 0.08 4.35 7.91 -2.91 -0.02 4.33 16 18 C 0.03 1.52 5.14 85.25 0.44 1.96 16 19 N -0.82 -46.47 10.95 21.82 0.24 -46.23 16 20 Si 0.98 39.95 29.59 68.60 2.03 41.98 16 21 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 22 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 23 H -0.25 -9.56 7.11 99.48 0.71 -8.85 16 24 C -0.13 -7.38 8.24 23.01 0.19 -7.19 16 25 C 0.12 2.77 6.68 22.51 0.15 2.92 16 26 O -0.51 -11.69 12.55 -92.42 -1.16 -12.85 16 27 C -0.16 -2.90 9.64 22.37 0.22 -2.68 16 28 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16 29 H 0.08 0.54 8.09 -2.39 -0.02 0.52 16 30 H 0.07 0.57 8.08 -2.39 -0.02 0.55 16 31 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 32 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.09 1.36 8.08 -2.39 -0.02 1.34 16 34 H 0.05 1.30 6.66 -2.39 -0.02 1.28 16 35 H 0.06 2.05 7.53 -2.38 -0.02 2.03 16 36 H 0.06 2.09 6.70 -2.39 -0.02 2.08 16 37 H 0.41 11.19 6.48 -92.71 -0.60 10.59 16 38 H 0.13 3.95 6.38 -2.91 -0.02 3.93 16 39 H 0.14 4.20 8.06 -2.91 -0.02 4.17 16 40 H 0.11 4.67 8.06 -2.91 -0.02 4.64 16 41 H 0.29 14.93 8.30 -92.70 -0.77 14.16 16 42 H 0.10 6.15 5.74 -2.91 -0.02 6.14 16 43 H 0.41 6.48 9.06 -74.06 -0.67 5.81 16 44 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -72.09 371.37 2.22 -69.87 By element: Atomic # 1 Polarization: 38.91 SS G_CDS: -0.22 Total: 38.69 kcal Atomic # 6 Polarization: -38.34 SS G_CDS: 3.95 Total: -34.38 kcal Atomic # 7 Polarization: -69.53 SS G_CDS: -2.32 Total: -71.85 kcal Atomic # 8 Polarization: -43.09 SS G_CDS: -1.22 Total: -44.31 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 2.03 Total: 41.98 kcal Total: -72.09 2.22 -69.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188687403.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.678 kcal (2) G-P(sol) polarization free energy of solvation -72.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds