Wall clock time and date at job start Tue Mar 31 2020 14:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47200 * 2 1 4 4 C 1.52996 * 109.47200 * 179.97438 * 3 2 1 5 5 C 1.50704 * 109.47307 * 180.02562 * 4 3 2 6 6 C 1.38228 * 119.99958 * 89.99708 * 5 4 3 7 7 C 1.38243 * 119.99696 * 179.97438 * 6 5 4 8 8 C 1.38224 * 119.99957 * 0.02562 * 7 6 5 9 9 S 1.76207 * 119.99967 * 179.97438 * 8 7 6 10 10 O 1.42095 * 106.39918 * 336.45947 * 9 8 7 11 11 O 1.42098 * 106.40181 * 203.54154 * 9 8 7 12 12 N 1.65597 * 107.21624 * 90.00006 * 9 8 7 13 13 C 1.46499 * 119.99926 * 269.72430 * 12 9 8 14 14 C 1.53001 * 109.47277 * 265.27680 * 13 12 9 15 15 C 1.46506 * 120.00079 * 90.00391 * 12 9 8 16 16 C 1.50701 * 109.46970 * 264.72396 * 15 12 9 17 17 H 1.08005 * 119.99694 * 359.97438 * 16 15 12 18 18 C 1.37871 * 120.00052 * 180.02562 * 16 15 12 19 19 N 1.31515 * 120.00110 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00229 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47250 * 89.99260 * 20 18 16 22 22 H 1.48497 * 109.47067 * 209.99831 * 20 18 16 23 23 H 1.48502 * 109.46618 * 329.99589 * 20 18 16 24 24 C 1.38238 * 120.00304 * 0.25091 * 8 7 6 25 25 C 1.38231 * 119.99694 * 359.49787 * 24 8 7 26 26 H 1.08999 * 109.47514 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47245 * 300.00501 * 1 2 3 28 28 H 1.09005 * 109.47202 * 60.00135 * 1 2 3 29 29 H 1.08994 * 109.47355 * 239.99982 * 2 1 3 30 30 H 1.08998 * 109.46847 * 119.99982 * 2 1 3 31 31 H 1.08999 * 109.47431 * 59.99613 * 3 2 1 32 32 H 1.08998 * 109.47206 * 299.99763 * 3 2 1 33 33 H 1.08999 * 109.47245 * 59.99499 * 4 3 2 34 34 H 1.09005 * 109.47202 * 299.99865 * 4 3 2 35 35 H 1.07999 * 120.00508 * 0.02562 * 6 5 4 36 36 H 1.08006 * 119.99736 * 180.02562 * 7 6 5 37 37 H 1.08991 * 109.47463 * 25.27752 * 13 12 9 38 38 H 1.09000 * 109.46878 * 145.27981 * 13 12 9 39 39 H 1.09005 * 109.47307 * 300.00055 * 14 13 12 40 40 H 1.08995 * 109.46954 * 59.99844 * 14 13 12 41 41 H 1.08996 * 109.47521 * 179.97438 * 14 13 12 42 42 H 1.08999 * 109.46864 * 24.71745 * 15 12 9 43 43 H 1.08999 * 109.46950 * 144.72128 * 15 12 9 44 44 H 0.97000 * 119.99969 * 180.02562 * 19 18 16 45 45 H 1.08004 * 119.99991 * 179.72421 * 24 8 7 46 46 H 1.08004 * 119.99946 * 180.24755 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0723 2.8633 0.0013 6 6 4.3022 3.5146 1.1987 7 6 4.7635 4.8178 1.1992 8 6 4.9945 5.4696 0.0024 9 16 5.5819 7.1309 0.0030 10 8 5.2018 7.6903 1.2527 11 8 5.2029 7.6910 -1.2467 12 7 7.2366 7.0657 0.0038 13 6 7.9681 7.0427 1.2728 14 6 8.3823 8.4668 1.6487 15 6 7.9691 7.0372 -1.2647 16 6 8.2776 5.6093 -1.6346 17 1 7.9601 4.8036 -0.9892 18 6 8.9660 5.3315 -2.7964 19 7 9.3530 6.3126 -3.5821 20 14 9.3478 3.5614 -3.2554 21 1 8.2381 3.0122 -4.0752 22 1 10.6103 3.5137 -4.0357 23 1 9.4984 2.7513 -2.0200 24 6 4.7592 4.8203 -1.1951 25 6 4.3028 3.5155 -1.1956 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8932 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.9285 -0.8890 34 1 3.9329 0.9288 0.8909 35 1 4.1221 3.0052 2.1338 36 1 4.9435 5.3265 2.1348 37 1 7.3281 6.6323 2.0538 38 1 8.8576 6.4213 1.1682 39 1 9.0224 8.8772 0.8677 40 1 7.4929 9.0881 1.7533 41 1 8.9262 8.4497 2.5931 42 1 7.3601 7.4915 -2.0462 43 1 8.8999 7.5945 -1.1592 44 1 9.8370 6.1171 -4.3997 45 1 4.9354 5.3312 -2.1302 46 1 4.1228 3.0067 -2.1312 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191241023.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:02 Heat of formation + Delta-G solvation = -77.098856 kcal Electronic energy + Delta-G solvation = -26094.387086 eV Core-core repulsion = 22495.964876 eV Total energy + Delta-G solvation = -3598.422209 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.24467 -36.66250 -36.04240 -35.93748 -35.20053 -32.71986 -32.46171 -30.78924 -29.94121 -28.69277 -26.61969 -24.52589 -23.13910 -22.60436 -21.76140 -21.53338 -20.96506 -18.51144 -17.27586 -16.84744 -16.29708 -16.04557 -15.51263 -15.29656 -14.89934 -14.38149 -14.28239 -14.25496 -13.81553 -13.36647 -13.31600 -13.06404 -12.99844 -12.83246 -12.71368 -12.07927 -11.96601 -11.92217 -11.68149 -11.54665 -11.46736 -11.41347 -11.32065 -11.06982 -11.04802 -10.97250 -10.96334 -10.70776 -10.49369 -10.43764 -10.29770 -9.97296 -9.76779 -8.87371 -8.75346 -8.49822 -8.03925 -6.11594 -4.17804 0.96259 1.24493 1.58661 3.23686 3.31068 3.33391 3.53087 3.87153 4.36297 4.38754 4.52873 4.66541 4.81351 4.83386 4.99210 5.02658 5.14139 5.21983 5.26024 5.43337 5.45292 5.48490 5.53498 5.55644 5.60032 5.74771 5.76201 5.81663 5.85204 5.89486 5.99042 6.02785 6.10745 6.13461 6.20137 6.32660 6.39312 6.45618 6.64937 6.66679 6.70598 7.11152 7.33915 7.42989 7.63545 7.85787 8.14814 8.87556 9.48390 10.96359 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010803 B = 0.004467 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2591.314094 B = 6267.153842 C = 8023.582814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.115 4.115 4 C -0.086 4.086 5 C -0.037 4.037 6 C -0.147 4.147 7 C -0.023 4.023 8 C -0.667 4.667 9 S 2.689 3.311 10 O -0.979 6.979 11 O -0.959 6.959 12 N -0.981 5.981 13 C 0.129 3.871 14 C -0.170 4.170 15 C 0.243 3.757 16 C -0.539 4.539 17 H 0.062 0.938 18 C 0.066 3.934 19 N -0.889 5.889 20 Si 0.890 3.110 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.274 1.274 24 C 0.006 3.994 25 C -0.142 4.142 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.124 0.876 36 H 0.134 0.866 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.061 0.939 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.053 0.947 43 H 0.042 0.958 44 H 0.264 0.736 45 H 0.143 0.857 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.880 -8.488 9.050 16.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.152 4.152 4 C -0.124 4.124 5 C -0.037 4.037 6 C -0.166 4.166 7 C -0.042 4.042 8 C -0.753 4.753 9 S 2.779 3.221 10 O -0.969 6.969 11 O -0.950 6.950 12 N -0.820 5.820 13 C 0.002 3.998 14 C -0.229 4.229 15 C 0.122 3.878 16 C -0.579 4.579 17 H 0.080 0.920 18 C -0.137 4.137 19 N -0.527 5.527 20 Si 0.718 3.282 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.199 1.199 24 C -0.014 4.014 25 C -0.161 4.161 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.142 0.858 36 H 0.151 0.849 37 H 0.082 0.918 38 H 0.099 0.901 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.060 0.940 44 H 0.074 0.926 45 H 0.161 0.839 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -11.275 -7.709 8.864 16.282 hybrid contribution 0.511 -1.882 -0.414 1.994 sum -10.763 -9.591 8.449 16.710 Atomic orbital electron populations 1.21776 0.95886 1.01480 1.01914 1.21545 0.95867 0.96769 1.02059 1.21605 0.94098 0.96824 1.02690 1.20723 0.95787 0.92619 1.03247 1.20101 0.94638 0.95536 0.93453 1.21011 1.02886 0.95183 0.97502 1.20828 0.92767 0.94131 0.96467 1.31173 1.17325 1.27618 0.99138 1.01922 0.73011 0.74133 0.73040 1.93502 1.82687 1.76251 1.44499 1.93545 1.82072 1.75809 1.43550 1.57392 1.22654 1.88480 1.13510 1.21024 0.97673 0.97038 0.84039 1.22215 1.01748 0.97909 1.01076 1.19258 0.92977 0.97475 0.78121 1.21565 1.36934 0.92702 1.06671 0.91986 1.24917 0.95516 0.97142 0.96129 1.69930 1.38439 1.31217 1.13160 0.86621 0.77927 0.85081 0.78596 1.20505 1.21106 1.19882 1.20976 0.89386 0.93846 0.97159 1.21133 1.02060 0.95210 0.97674 0.92859 0.92751 0.92697 0.91948 0.92023 0.91717 0.91609 0.90641 0.90776 0.85798 0.84868 0.91788 0.90056 0.92000 0.92510 0.92267 0.92915 0.94008 0.92592 0.83900 0.85552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.73 16 2 C -0.12 -0.97 5.93 -26.73 -0.16 -1.12 16 3 C -0.11 -1.05 5.20 -26.73 -0.14 -1.19 16 4 C -0.09 -0.90 5.34 -27.88 -0.15 -1.04 16 5 C -0.04 -0.51 5.13 -104.62 -0.54 -1.04 16 6 C -0.15 -2.03 9.70 -39.58 -0.38 -2.41 16 7 C -0.02 -0.36 9.52 -39.58 -0.38 -0.74 16 8 C -0.67 -12.22 5.97 -39.59 -0.24 -12.45 16 9 S 2.69 54.21 5.65 -107.50 -0.61 53.60 16 10 O -0.98 -19.69 16.25 -57.17 -0.93 -20.62 16 11 O -0.96 -22.11 15.83 -57.17 -0.90 -23.02 16 12 N -0.98 -20.18 2.77 -115.66 -0.32 -20.50 16 13 C 0.13 2.22 6.06 -4.04 -0.02 2.20 16 14 C -0.17 -2.65 10.24 37.16 0.38 -2.27 16 15 C 0.24 5.96 5.44 -5.19 -0.03 5.93 16 16 C -0.54 -14.02 9.38 -34.44 -0.32 -14.35 16 17 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 18 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 19 N -0.89 -25.14 13.29 55.43 0.74 -24.40 16 20 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 24 C 0.01 0.10 9.52 -39.58 -0.38 -0.28 16 25 C -0.14 -2.20 9.70 -39.58 -0.38 -2.59 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.75 8.09 -51.93 -0.42 0.33 16 34 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 35 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 36 H 0.13 1.87 7.62 -52.48 -0.40 1.47 16 37 H 0.06 0.97 7.61 -51.93 -0.40 0.58 16 38 H 0.08 1.40 8.11 -51.93 -0.42 0.98 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.05 1.41 6.91 -51.93 -0.36 1.05 16 43 H 0.04 1.06 8.11 -51.93 -0.42 0.64 16 44 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 45 H 0.14 2.72 7.61 -52.48 -0.40 2.32 16 46 H 0.13 1.69 8.06 -52.48 -0.42 1.27 16 LS Contribution 392.95 15.07 5.92 5.92 Total: -1.00 -30.95 392.95 -11.44 -42.40 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -7.85 Total: 1.35 kcal Atomic # 6 Polarization: -27.95 SS G_CDS: -2.47 Total: -30.41 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: 0.42 Total: -44.90 kcal Atomic # 8 Polarization: -41.80 SS G_CDS: -1.83 Total: -43.63 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: 54.21 SS G_CDS: -0.61 Total: 53.60 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.95 -11.44 -42.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191241023.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.704 kcal (2) G-P(sol) polarization free energy of solvation -30.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds