Wall clock time and date at job start Tue Mar 31 2020 14:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47200 * 2 1 4 4 C 1.52996 * 109.47200 * 179.97438 * 3 2 1 5 5 C 1.50704 * 109.47307 * 180.02562 * 4 3 2 6 6 C 1.38228 * 119.99958 * 89.99708 * 5 4 3 7 7 C 1.38243 * 119.99696 * 179.97438 * 6 5 4 8 8 C 1.38224 * 119.99957 * 0.02562 * 7 6 5 9 9 S 1.76207 * 119.99967 * 179.97438 * 8 7 6 10 10 O 1.42095 * 106.39918 * 336.45947 * 9 8 7 11 11 O 1.42098 * 106.40181 * 203.54154 * 9 8 7 12 12 N 1.65597 * 107.21624 * 90.00006 * 9 8 7 13 13 C 1.46499 * 119.99926 * 269.72430 * 12 9 8 14 14 C 1.53001 * 109.47277 * 265.27680 * 13 12 9 15 15 C 1.46506 * 120.00079 * 90.00391 * 12 9 8 16 16 C 1.50701 * 109.46970 * 264.72396 * 15 12 9 17 17 H 1.08005 * 119.99694 * 359.97438 * 16 15 12 18 18 C 1.37871 * 120.00052 * 180.02562 * 16 15 12 19 19 N 1.31515 * 120.00110 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00229 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47250 * 89.99260 * 20 18 16 22 22 H 1.48497 * 109.47067 * 209.99831 * 20 18 16 23 23 H 1.48502 * 109.46618 * 329.99589 * 20 18 16 24 24 C 1.38238 * 120.00304 * 0.25091 * 8 7 6 25 25 C 1.38231 * 119.99694 * 359.49787 * 24 8 7 26 26 H 1.08999 * 109.47514 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47245 * 300.00501 * 1 2 3 28 28 H 1.09005 * 109.47202 * 60.00135 * 1 2 3 29 29 H 1.08994 * 109.47355 * 239.99982 * 2 1 3 30 30 H 1.08998 * 109.46847 * 119.99982 * 2 1 3 31 31 H 1.08999 * 109.47431 * 59.99613 * 3 2 1 32 32 H 1.08998 * 109.47206 * 299.99763 * 3 2 1 33 33 H 1.08999 * 109.47245 * 59.99499 * 4 3 2 34 34 H 1.09005 * 109.47202 * 299.99865 * 4 3 2 35 35 H 1.07999 * 120.00508 * 0.02562 * 6 5 4 36 36 H 1.08006 * 119.99736 * 180.02562 * 7 6 5 37 37 H 1.08991 * 109.47463 * 25.27752 * 13 12 9 38 38 H 1.09000 * 109.46878 * 145.27981 * 13 12 9 39 39 H 1.09005 * 109.47307 * 300.00055 * 14 13 12 40 40 H 1.08995 * 109.46954 * 59.99844 * 14 13 12 41 41 H 1.08996 * 109.47521 * 179.97438 * 14 13 12 42 42 H 1.08999 * 109.46864 * 24.71745 * 15 12 9 43 43 H 1.08999 * 109.46950 * 144.72128 * 15 12 9 44 44 H 0.97000 * 119.99969 * 180.02562 * 19 18 16 45 45 H 1.08004 * 119.99991 * 179.72421 * 24 8 7 46 46 H 1.08004 * 119.99946 * 180.24755 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0723 2.8633 0.0013 6 6 4.3022 3.5146 1.1987 7 6 4.7635 4.8178 1.1992 8 6 4.9945 5.4696 0.0024 9 16 5.5819 7.1309 0.0030 10 8 5.2018 7.6903 1.2527 11 8 5.2029 7.6910 -1.2467 12 7 7.2366 7.0657 0.0038 13 6 7.9681 7.0427 1.2728 14 6 8.3823 8.4668 1.6487 15 6 7.9691 7.0372 -1.2647 16 6 8.2776 5.6093 -1.6346 17 1 7.9601 4.8036 -0.9892 18 6 8.9660 5.3315 -2.7964 19 7 9.3530 6.3126 -3.5821 20 14 9.3478 3.5614 -3.2554 21 1 8.2381 3.0122 -4.0752 22 1 10.6103 3.5137 -4.0357 23 1 9.4984 2.7513 -2.0200 24 6 4.7592 4.8203 -1.1951 25 6 4.3028 3.5155 -1.1956 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8932 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.9285 -0.8890 34 1 3.9329 0.9288 0.8909 35 1 4.1221 3.0052 2.1338 36 1 4.9435 5.3265 2.1348 37 1 7.3281 6.6323 2.0538 38 1 8.8576 6.4213 1.1682 39 1 9.0224 8.8772 0.8677 40 1 7.4929 9.0881 1.7533 41 1 8.9262 8.4497 2.5931 42 1 7.3601 7.4915 -2.0462 43 1 8.8999 7.5945 -1.1592 44 1 9.8370 6.1171 -4.3997 45 1 4.9354 5.3312 -2.1302 46 1 4.1228 3.0067 -2.1312 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191241023.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:01 Heat of formation + Delta-G solvation = -94.014069 kcal Electronic energy + Delta-G solvation = -26095.120585 eV Core-core repulsion = 22495.964876 eV Total energy + Delta-G solvation = -3599.155708 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.40315 -38.32235 -37.68952 -36.89631 -36.70173 -34.69683 -33.40218 -32.00718 -31.52549 -29.59973 -28.49857 -25.42405 -24.91820 -23.83204 -23.27481 -22.47532 -21.80053 -20.01387 -18.79050 -18.64043 -18.16591 -17.35940 -16.75433 -16.46173 -16.30389 -15.82503 -15.52157 -15.30844 -14.99675 -14.77382 -14.67281 -14.49424 -13.91934 -13.81482 -13.78705 -13.76146 -13.58967 -13.34514 -13.14835 -13.02891 -12.86448 -12.78134 -12.66348 -12.37933 -12.29983 -12.16289 -12.13849 -11.95772 -11.92501 -11.74713 -11.59171 -11.44047 -11.40002 -10.58333 -10.07695 -9.98247 -9.73316 -8.17120 -6.30350 -0.51613 -0.11720 0.36462 1.40537 1.41047 1.51373 2.04474 2.41084 2.54917 2.85109 3.14578 3.35235 3.66802 3.78689 3.97203 3.99809 4.09630 4.14411 4.31936 4.35370 4.39828 4.45211 4.49734 4.58963 4.68104 4.72345 4.81123 4.86434 4.90486 4.98339 5.00029 5.05047 5.13944 5.15932 5.18634 5.25022 5.26788 5.30518 5.35275 5.42506 5.50214 5.52991 5.55732 5.75707 5.92759 5.94539 6.10437 6.81376 7.39496 8.91005 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010803 B = 0.004467 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2591.314094 B = 6267.153842 C = 8023.582814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.122 4.122 3 C -0.112 4.112 4 C -0.083 4.083 5 C -0.028 4.028 6 C -0.140 4.140 7 C -0.030 4.030 8 C -0.681 4.681 9 S 2.695 3.305 10 O -0.981 6.981 11 O -1.000 7.000 12 N -0.987 5.987 13 C 0.118 3.882 14 C -0.168 4.168 15 C 0.259 3.741 16 C -0.540 4.540 17 H 0.066 0.934 18 C 0.014 3.986 19 N -0.927 5.927 20 Si 0.953 3.047 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.263 1.263 24 C -0.024 4.024 25 C -0.149 4.149 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.049 0.951 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.164 0.836 36 H 0.151 0.849 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.048 0.952 40 H 0.049 0.951 41 H 0.093 0.907 42 H 0.020 0.980 43 H 0.027 0.973 44 H 0.266 0.734 45 H 0.118 0.882 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.522 -11.705 11.243 19.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C -0.149 4.149 4 C -0.121 4.121 5 C -0.028 4.028 6 C -0.159 4.159 7 C -0.049 4.049 8 C -0.771 4.771 9 S 2.789 3.211 10 O -0.971 6.971 11 O -0.991 6.991 12 N -0.825 5.825 13 C -0.007 4.007 14 C -0.227 4.227 15 C 0.136 3.864 16 C -0.579 4.579 17 H 0.084 0.916 18 C -0.185 4.185 19 N -0.567 5.567 20 Si 0.778 3.222 21 H -0.200 1.200 22 H -0.208 1.208 23 H -0.188 1.188 24 C -0.043 4.043 25 C -0.168 4.168 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.099 0.901 34 H 0.113 0.887 35 H 0.181 0.819 36 H 0.169 0.831 37 H 0.107 0.893 38 H 0.100 0.900 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.112 0.888 42 H 0.038 0.962 43 H 0.045 0.955 44 H 0.075 0.925 45 H 0.136 0.864 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -11.908 -10.885 11.085 19.575 hybrid contribution 0.622 -0.921 -1.028 1.514 sum -11.286 -11.806 10.057 19.181 Atomic orbital electron populations 1.21788 0.95670 1.01986 1.01765 1.21522 0.96045 0.95745 1.02622 1.21577 0.93185 0.97806 1.02350 1.20808 0.96390 0.90269 1.04588 1.20544 0.92637 0.97043 0.92620 1.21473 1.00956 0.94236 0.99187 1.21148 0.92589 0.95192 0.95965 1.30713 1.19602 1.26275 1.00484 1.01421 0.72654 0.74902 0.72159 1.93481 1.82554 1.77081 1.44010 1.93487 1.82632 1.77553 1.45420 1.57290 1.22857 1.89029 1.13339 1.21337 0.97979 0.98324 0.83095 1.22206 1.01573 0.96569 1.02367 1.18781 0.91902 0.96562 0.79184 1.21793 1.36205 0.93233 1.06659 0.91596 1.25741 0.95502 1.01142 0.96154 1.70056 1.39488 1.33398 1.13720 0.85623 0.77725 0.80255 0.78581 1.19967 1.20848 1.18768 1.20934 0.91664 0.95382 0.96334 1.21378 1.01724 0.94161 0.99559 0.92063 0.92649 0.93154 0.91779 0.91067 0.91570 0.92558 0.90067 0.88737 0.81877 0.83128 0.89264 0.90045 0.93330 0.93198 0.88799 0.96204 0.95528 0.92532 0.86380 0.83949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.91 71.98 0.71 -1.13 16 2 C -0.12 -1.49 5.93 30.59 0.18 -1.31 16 3 C -0.11 -1.69 5.20 30.59 0.16 -1.53 16 4 C -0.08 -1.40 5.34 29.85 0.16 -1.24 16 5 C -0.03 -0.68 5.13 -19.87 -0.10 -0.79 16 6 C -0.14 -3.35 9.70 22.27 0.22 -3.13 16 7 C -0.03 -0.87 9.52 22.27 0.21 -0.66 16 8 C -0.68 -24.97 5.97 22.27 0.13 -24.84 16 9 S 2.69 111.86 5.65 -56.49 -0.32 111.54 16 10 O -0.98 -39.41 16.25 -128.00 -2.08 -41.49 16 11 O -1.00 -49.09 15.83 -128.00 -2.03 -51.11 16 12 N -0.99 -41.63 2.77 -519.85 -1.44 -43.06 16 13 C 0.12 4.00 6.06 86.38 0.52 4.52 16 14 C -0.17 -5.14 10.24 71.98 0.74 -4.40 16 15 C 0.26 13.28 5.44 85.63 0.47 13.75 16 16 C -0.54 -28.63 9.38 25.60 0.24 -28.39 16 17 H 0.07 3.38 7.81 -2.91 -0.02 3.36 16 18 C 0.01 0.77 5.46 84.65 0.46 1.23 16 19 N -0.93 -53.91 13.29 21.45 0.28 -53.63 16 20 Si 0.95 42.41 29.54 68.60 2.03 44.43 16 21 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 22 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 23 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 24 C -0.02 -0.88 9.52 22.27 0.21 -0.67 16 25 C -0.15 -4.47 9.70 22.27 0.22 -4.26 16 26 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.76 16 30 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.08 1.32 8.09 -2.39 -0.02 1.30 16 34 H 0.09 1.27 8.09 -2.38 -0.02 1.25 16 35 H 0.16 2.63 8.06 -2.91 -0.02 2.60 16 36 H 0.15 3.82 7.62 -2.91 -0.02 3.80 16 37 H 0.09 2.56 7.61 -2.39 -0.02 2.54 16 38 H 0.08 2.75 8.11 -2.39 -0.02 2.73 16 39 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 40 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.02 1.14 6.91 -2.39 -0.02 1.13 16 43 H 0.03 1.42 8.11 -2.39 -0.02 1.40 16 44 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 45 H 0.12 4.85 7.61 -2.91 -0.02 4.83 16 46 H 0.14 3.65 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -68.50 392.95 1.91 -66.59 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: 0.93 Total: 19.58 kcal Atomic # 6 Polarization: -57.37 SS G_CDS: 4.53 Total: -52.85 kcal Atomic # 7 Polarization: -95.54 SS G_CDS: -1.15 Total: -96.69 kcal Atomic # 8 Polarization: -88.50 SS G_CDS: -4.11 Total: -92.61 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.43 kcal Atomic # 16 Polarization: 111.86 SS G_CDS: -0.32 Total: 111.54 kcal Total: -68.50 1.91 -66.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191241023.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.423 kcal (2) G-P(sol) polarization free energy of solvation -68.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds