Wall clock time and date at job start Tue Mar 31 2020 14:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47210 * 2 1 4 4 C 1.53000 * 109.47210 * 179.97438 * 3 2 1 5 5 C 1.50706 * 109.47116 * 179.97438 * 4 3 2 6 6 C 1.38233 * 120.00109 * 269.72529 * 5 4 3 7 7 C 1.38239 * 119.99759 * 179.74218 * 6 5 4 8 8 C 1.38234 * 119.99986 * 0.53603 * 7 6 5 9 9 S 1.76199 * 120.00318 * 179.76835 * 8 7 6 10 10 O 1.42102 * 106.40103 * 23.51363 * 9 8 7 11 11 O 1.42097 * 106.40599 * 156.43497 * 9 8 7 12 12 N 1.65598 * 107.21560 * 269.97542 * 9 8 7 13 13 C 1.46505 * 120.00101 * 64.99849 * 12 9 8 14 14 C 1.52998 * 109.47374 * 165.00161 * 13 12 9 15 15 C 1.52993 * 109.47206 * 179.97438 * 14 13 12 16 16 C 1.50709 * 109.46883 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00277 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99706 * 179.97438 * 16 15 14 19 19 N 1.31520 * 119.99798 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00165 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47332 * 89.99610 * 20 18 16 22 22 H 1.48498 * 109.47071 * 210.00010 * 20 18 16 23 23 H 1.48502 * 109.46811 * 329.99366 * 20 18 16 24 24 C 1.38238 * 120.00067 * 359.73675 * 8 7 6 25 25 C 1.38235 * 120.00108 * 359.97438 * 24 8 7 26 26 H 1.09000 * 109.47214 * 300.00611 * 1 2 3 27 27 H 1.09000 * 109.46955 * 60.00396 * 1 2 3 28 28 H 1.09002 * 109.47131 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47467 * 239.99839 * 2 1 3 30 30 H 1.09000 * 109.46955 * 119.99604 * 2 1 3 31 31 H 1.09000 * 109.47531 * 59.99583 * 3 2 1 32 32 H 1.09008 * 109.47250 * 300.00157 * 3 2 1 33 33 H 1.09000 * 109.46884 * 60.00289 * 4 3 2 34 34 H 1.09000 * 109.46955 * 299.99604 * 4 3 2 35 35 H 1.08004 * 119.99934 * 0.02562 * 6 5 4 36 36 H 1.08000 * 119.99962 * 180.29747 * 7 6 5 37 37 H 0.96995 * 119.99982 * 244.99803 * 12 9 8 38 38 H 1.09004 * 109.46993 * 285.00022 * 13 12 9 39 39 H 1.08995 * 109.47421 * 44.99893 * 13 12 9 40 40 H 1.09004 * 109.46947 * 299.99889 * 14 13 12 41 41 H 1.09008 * 109.47292 * 59.99540 * 14 13 12 42 42 H 1.08997 * 109.47497 * 299.99279 * 15 14 13 43 43 H 1.08997 * 109.47271 * 60.00357 * 15 14 13 44 44 H 0.96997 * 119.99653 * 180.02562 * 19 18 16 45 45 H 1.08000 * 120.00559 * 180.02562 * 24 8 7 46 46 H 1.07999 * 120.00165 * 179.97438 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0724 2.8633 0.0000 6 6 4.3087 3.5124 -1.1974 7 6 4.7644 4.8175 -1.1979 8 6 4.9943 5.4698 -0.0010 9 16 5.5810 7.1312 -0.0016 10 8 5.2020 7.6901 -1.2519 11 8 5.2005 7.6916 1.2475 12 7 7.2357 7.0667 -0.0006 13 6 7.9475 6.5017 -1.1498 14 6 9.4254 6.8905 -1.0758 15 6 10.1688 6.2999 -2.2755 16 6 11.6244 6.6835 -2.2030 17 1 11.9833 7.2884 -1.3834 18 6 12.4980 6.2622 -3.1829 19 7 13.7682 6.5974 -3.1199 20 14 11.8772 5.2166 -4.6009 21 1 11.4444 6.0989 -5.7142 22 1 12.9665 4.3238 -5.0716 23 1 10.7271 4.3957 -4.1441 24 6 4.7634 4.8188 1.1964 25 6 4.3020 3.5157 1.1970 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6766 1.9564 -0.8900 33 1 3.9337 0.9285 -0.8891 34 1 3.9329 0.9288 0.8909 35 1 4.1329 3.0013 -2.1325 36 1 4.9444 5.3262 -2.1334 37 1 7.7337 7.4030 0.7608 38 1 7.8564 5.4156 -1.1354 39 1 7.5153 6.8903 -2.0718 40 1 9.5165 7.9767 -1.0902 41 1 9.8577 6.5019 -0.1537 42 1 10.0778 5.2139 -2.2607 43 1 9.7367 6.6883 -3.1978 44 1 14.3827 6.3012 -3.8095 45 1 4.9426 5.3285 2.1316 46 1 4.1219 3.0070 2.1325 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191260793.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:05 Heat of formation + Delta-G solvation = -87.382572 kcal Electronic energy + Delta-G solvation = -24614.978702 eV Core-core repulsion = 21016.110557 eV Total energy + Delta-G solvation = -3598.868145 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.75680 -37.27053 -36.27458 -36.08649 -35.85105 -33.22979 -32.85508 -31.32371 -31.18363 -29.08415 -26.82486 -24.89076 -23.20868 -22.78675 -21.97793 -21.35349 -20.51942 -19.40914 -18.11225 -17.31866 -16.82939 -16.41869 -15.87188 -15.80889 -15.25913 -14.89635 -14.61198 -14.55420 -14.48105 -14.05302 -13.83975 -13.35253 -13.31738 -13.18510 -12.90369 -12.48409 -12.34421 -12.29195 -12.09888 -12.02726 -11.85053 -11.73303 -11.69466 -11.40060 -11.39651 -11.14683 -10.99825 -10.97732 -10.80232 -10.11879 -9.87333 -9.72871 -9.42001 -9.32652 -9.28738 -9.22119 -8.56723 -6.07049 -4.05682 0.31986 0.61532 1.04672 2.93710 3.27812 3.29160 3.36531 3.38718 3.74250 4.18844 4.22519 4.40439 4.42448 4.55777 4.59683 4.65068 4.74810 4.88363 5.02865 5.17236 5.18054 5.21336 5.23260 5.26685 5.35291 5.39254 5.45579 5.53230 5.56413 5.66353 5.68776 5.74801 5.78757 5.85335 5.88086 5.89632 5.93383 6.17861 6.40663 6.56482 6.57480 6.75999 7.05705 7.21596 7.34772 7.74817 8.49933 8.97473 9.54841 11.06256 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011907 B = 0.002735 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.971359 B =10235.794131 C =11961.545851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.115 4.115 4 C -0.090 4.090 5 C -0.028 4.028 6 C -0.139 4.139 7 C -0.016 4.016 8 C -0.679 4.679 9 S 2.695 3.305 10 O -0.958 6.958 11 O -0.966 6.966 12 N -1.113 6.113 13 C 0.110 3.890 14 C -0.108 4.108 15 C -0.014 4.014 16 C -0.521 4.521 17 H 0.072 0.928 18 C 0.065 3.935 19 N -0.903 5.903 20 Si 0.880 3.120 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.265 1.265 24 C -0.016 4.016 25 C -0.141 4.141 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.131 0.869 36 H 0.142 0.858 37 H 0.419 0.581 38 H 0.060 0.940 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.018 0.982 43 H 0.015 0.985 44 H 0.263 0.737 45 H 0.140 0.860 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.278 -11.657 8.069 28.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.152 4.152 4 C -0.127 4.127 5 C -0.029 4.029 6 C -0.158 4.158 7 C -0.035 4.035 8 C -0.766 4.766 9 S 2.784 3.216 10 O -0.948 6.948 11 O -0.956 6.956 12 N -0.874 5.874 13 C -0.015 4.015 14 C -0.147 4.147 15 C -0.052 4.052 16 C -0.559 4.559 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.541 5.541 20 Si 0.708 3.292 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.190 1.190 24 C -0.035 4.035 25 C -0.160 4.160 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.149 0.851 36 H 0.159 0.841 37 H 0.254 0.746 38 H 0.078 0.922 39 H 0.095 0.905 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.036 0.964 43 H 0.034 0.966 44 H 0.073 0.927 45 H 0.157 0.843 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -25.729 -11.007 7.808 29.054 hybrid contribution 0.192 -1.222 -0.475 1.325 sum -25.538 -12.229 7.334 29.249 Atomic orbital electron populations 1.21778 0.95745 1.01669 1.01929 1.21544 0.96015 0.96511 1.02193 1.21609 0.93752 0.97153 1.02732 1.20782 0.96080 0.92174 1.03657 1.20237 0.93433 0.95850 0.93339 1.21185 1.01568 0.95047 0.98024 1.20989 0.91593 0.94131 0.96763 1.31002 1.19162 1.26902 0.99498 1.01800 0.72541 0.73724 0.73539 1.93587 1.81832 1.75192 1.44153 1.93571 1.81767 1.76360 1.43933 1.55463 1.24911 1.77995 1.29015 1.21615 0.95644 0.97445 0.86804 1.21670 0.90400 1.01511 1.01140 1.19555 0.96359 0.96117 0.93184 1.21103 0.91034 1.33393 1.10420 0.90966 1.25047 0.94765 0.95825 0.97955 1.69916 1.03166 1.46195 1.34863 0.86769 0.78713 0.80859 0.82881 1.20206 1.21430 1.18982 1.20909 0.91893 0.94085 0.96588 1.21154 1.01847 0.95075 0.97950 0.92720 0.92684 0.92708 0.91861 0.91905 0.91648 0.91597 0.90354 0.90415 0.85075 0.84060 0.74620 0.92159 0.90510 0.91714 0.91937 0.96372 0.96635 0.92712 0.84258 0.85192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.91 37.16 0.37 -0.41 16 2 C -0.13 -0.65 5.93 -26.73 -0.16 -0.81 16 3 C -0.11 -0.68 5.20 -26.73 -0.14 -0.82 16 4 C -0.09 -0.58 5.35 -27.88 -0.15 -0.73 16 5 C -0.03 -0.25 5.13 -104.62 -0.54 -0.79 16 6 C -0.14 -1.35 9.70 -39.58 -0.38 -1.73 16 7 C -0.02 -0.17 9.52 -39.58 -0.38 -0.55 16 8 C -0.68 -8.04 5.95 -39.58 -0.24 -8.27 16 9 S 2.69 35.64 5.74 -107.50 -0.62 35.02 16 10 O -0.96 -15.28 16.75 -57.17 -0.96 -16.24 16 11 O -0.97 -14.43 17.28 -57.17 -0.99 -15.41 16 12 N -1.11 -14.21 6.00 -10.61 -0.06 -14.28 16 13 C 0.11 1.63 6.22 -4.04 -0.03 1.60 16 14 C -0.11 -1.97 5.29 -26.74 -0.14 -2.11 16 15 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 16 C -0.52 -14.53 9.66 -34.44 -0.33 -14.86 16 17 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 18 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 19 N -0.90 -27.55 13.96 55.43 0.77 -26.77 16 20 Si 0.88 21.30 27.47 -169.99 -4.67 16.63 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 23 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 24 C -0.02 -0.16 9.52 -39.58 -0.38 -0.54 16 25 C -0.14 -1.30 9.70 -39.58 -0.38 -1.68 16 26 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 33 H 0.08 0.47 8.08 -51.93 -0.42 0.05 16 34 H 0.08 0.44 8.09 -51.93 -0.42 0.02 16 35 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 36 H 0.14 1.48 7.62 -52.49 -0.40 1.08 16 37 H 0.42 4.67 8.65 -34.47 -0.30 4.37 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.08 1.13 7.75 -51.93 -0.40 0.73 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.06 1.10 8.14 -51.92 -0.42 0.68 16 42 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 43 H 0.02 0.35 7.57 -51.93 -0.39 -0.05 16 44 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 45 H 0.14 1.29 7.62 -52.49 -0.40 0.89 16 46 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 390.97 15.07 5.89 5.89 Total: -1.00 -34.25 390.97 -11.48 -45.73 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -7.77 Total: -0.23 kcal Atomic # 6 Polarization: -27.26 SS G_CDS: -3.08 Total: -30.34 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: 0.71 Total: -41.05 kcal Atomic # 8 Polarization: -29.71 SS G_CDS: -1.95 Total: -31.66 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.67 Total: 16.63 kcal Atomic # 16 Polarization: 35.64 SS G_CDS: -0.62 Total: 35.02 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.25 -11.48 -45.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191260793.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.653 kcal (2) G-P(sol) polarization free energy of solvation -34.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds