Wall clock time and date at job start Tue Mar 31 2020 14:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47210 * 2 1 4 4 C 1.53000 * 109.47210 * 179.97438 * 3 2 1 5 5 C 1.50706 * 109.47116 * 179.97438 * 4 3 2 6 6 C 1.38233 * 120.00109 * 269.72529 * 5 4 3 7 7 C 1.38239 * 119.99759 * 179.74218 * 6 5 4 8 8 C 1.38234 * 119.99986 * 0.53603 * 7 6 5 9 9 S 1.76199 * 120.00318 * 179.76835 * 8 7 6 10 10 O 1.42102 * 106.40103 * 23.51363 * 9 8 7 11 11 O 1.42097 * 106.40599 * 156.43497 * 9 8 7 12 12 N 1.65598 * 107.21560 * 269.97542 * 9 8 7 13 13 C 1.46505 * 120.00101 * 64.99849 * 12 9 8 14 14 C 1.52998 * 109.47374 * 165.00161 * 13 12 9 15 15 C 1.52993 * 109.47206 * 179.97438 * 14 13 12 16 16 C 1.50709 * 109.46883 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00277 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99706 * 179.97438 * 16 15 14 19 19 N 1.31520 * 119.99798 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00165 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47332 * 89.99610 * 20 18 16 22 22 H 1.48498 * 109.47071 * 210.00010 * 20 18 16 23 23 H 1.48502 * 109.46811 * 329.99366 * 20 18 16 24 24 C 1.38238 * 120.00067 * 359.73675 * 8 7 6 25 25 C 1.38235 * 120.00108 * 359.97438 * 24 8 7 26 26 H 1.09000 * 109.47214 * 300.00611 * 1 2 3 27 27 H 1.09000 * 109.46955 * 60.00396 * 1 2 3 28 28 H 1.09002 * 109.47131 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47467 * 239.99839 * 2 1 3 30 30 H 1.09000 * 109.46955 * 119.99604 * 2 1 3 31 31 H 1.09000 * 109.47531 * 59.99583 * 3 2 1 32 32 H 1.09008 * 109.47250 * 300.00157 * 3 2 1 33 33 H 1.09000 * 109.46884 * 60.00289 * 4 3 2 34 34 H 1.09000 * 109.46955 * 299.99604 * 4 3 2 35 35 H 1.08004 * 119.99934 * 0.02562 * 6 5 4 36 36 H 1.08000 * 119.99962 * 180.29747 * 7 6 5 37 37 H 0.96995 * 119.99982 * 244.99803 * 12 9 8 38 38 H 1.09004 * 109.46993 * 285.00022 * 13 12 9 39 39 H 1.08995 * 109.47421 * 44.99893 * 13 12 9 40 40 H 1.09004 * 109.46947 * 299.99889 * 14 13 12 41 41 H 1.09008 * 109.47292 * 59.99540 * 14 13 12 42 42 H 1.08997 * 109.47497 * 299.99279 * 15 14 13 43 43 H 1.08997 * 109.47271 * 60.00357 * 15 14 13 44 44 H 0.96997 * 119.99653 * 180.02562 * 19 18 16 45 45 H 1.08000 * 120.00559 * 180.02562 * 24 8 7 46 46 H 1.07999 * 120.00165 * 179.97438 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0724 2.8633 0.0000 6 6 4.3087 3.5124 -1.1974 7 6 4.7644 4.8175 -1.1979 8 6 4.9943 5.4698 -0.0010 9 16 5.5810 7.1312 -0.0016 10 8 5.2020 7.6901 -1.2519 11 8 5.2005 7.6916 1.2475 12 7 7.2357 7.0667 -0.0006 13 6 7.9475 6.5017 -1.1498 14 6 9.4254 6.8905 -1.0758 15 6 10.1688 6.2999 -2.2755 16 6 11.6244 6.6835 -2.2030 17 1 11.9833 7.2884 -1.3834 18 6 12.4980 6.2622 -3.1829 19 7 13.7682 6.5974 -3.1199 20 14 11.8772 5.2166 -4.6009 21 1 11.4444 6.0989 -5.7142 22 1 12.9665 4.3238 -5.0716 23 1 10.7271 4.3957 -4.1441 24 6 4.7634 4.8188 1.1964 25 6 4.3020 3.5157 1.1970 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6766 1.9564 -0.8900 33 1 3.9337 0.9285 -0.8891 34 1 3.9329 0.9288 0.8909 35 1 4.1329 3.0013 -2.1325 36 1 4.9444 5.3262 -2.1334 37 1 7.7337 7.4030 0.7608 38 1 7.8564 5.4156 -1.1354 39 1 7.5153 6.8903 -2.0718 40 1 9.5165 7.9767 -1.0902 41 1 9.8577 6.5019 -0.1537 42 1 10.0778 5.2139 -2.2607 43 1 9.7367 6.6883 -3.1978 44 1 14.3827 6.3012 -3.8095 45 1 4.9426 5.3285 2.1316 46 1 4.1219 3.0070 2.1325 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191260793.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:05 Heat of formation + Delta-G solvation = -109.101025 kcal Electronic energy + Delta-G solvation = -24615.920485 eV Core-core repulsion = 21016.110557 eV Total energy + Delta-G solvation = -3599.809928 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.46294 -38.40990 -37.42265 -37.00898 -36.72785 -35.10994 -33.44718 -32.95833 -32.05797 -29.65135 -28.53923 -25.45389 -24.49784 -23.87291 -22.58388 -22.11468 -21.82519 -20.46717 -19.06702 -18.97112 -18.30957 -17.34245 -16.72641 -16.54245 -16.27743 -16.11962 -15.87486 -15.53023 -15.34882 -15.00986 -14.79842 -14.53559 -14.09087 -13.97481 -13.82981 -13.81167 -13.76886 -13.29411 -13.25894 -13.18648 -12.89622 -12.76974 -12.69880 -12.40842 -12.24204 -11.96900 -11.95343 -11.81783 -11.63996 -11.57275 -11.46623 -11.41468 -11.29343 -10.73372 -10.45655 -10.10720 -10.04453 -8.26381 -6.30679 -0.66791 -0.21820 0.30508 1.40204 1.41295 1.53120 1.96527 2.39426 2.44952 2.75905 3.09398 3.27974 3.64525 3.74757 3.92771 4.01518 4.07314 4.12555 4.25441 4.30771 4.30940 4.34908 4.43202 4.55515 4.64794 4.66015 4.79634 4.84000 4.87519 4.92748 4.96329 5.01957 5.06964 5.08436 5.12349 5.15607 5.19815 5.29379 5.33685 5.48905 5.53642 5.53966 5.61613 5.69165 5.86169 6.04943 6.31213 6.77921 7.33803 8.90275 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011907 B = 0.002735 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.971359 B =10235.794131 C =11961.545851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.123 4.123 3 C -0.112 4.112 4 C -0.087 4.087 5 C -0.026 4.026 6 C -0.145 4.145 7 C -0.033 4.033 8 C -0.688 4.688 9 S 2.711 3.289 10 O -0.988 6.988 11 O -0.986 6.986 12 N -1.109 6.109 13 C 0.118 3.882 14 C -0.103 4.103 15 C -0.015 4.015 16 C -0.532 4.532 17 H 0.031 0.969 18 C -0.001 4.001 19 N -0.954 5.954 20 Si 0.951 3.049 21 H -0.269 1.269 22 H -0.287 1.287 23 H -0.238 1.238 24 C -0.028 4.028 25 C -0.144 4.144 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.151 0.849 36 H 0.143 0.857 37 H 0.426 0.574 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.056 0.944 41 H 0.064 0.936 42 H 0.030 0.970 43 H 0.023 0.977 44 H 0.265 0.735 45 H 0.148 0.852 46 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.435 -14.207 7.740 31.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.161 4.161 3 C -0.149 4.149 4 C -0.124 4.124 5 C -0.027 4.027 6 C -0.163 4.163 7 C -0.052 4.052 8 C -0.777 4.777 9 S 2.804 3.196 10 O -0.978 6.978 11 O -0.976 6.976 12 N -0.871 5.871 13 C -0.008 4.008 14 C -0.142 4.142 15 C -0.053 4.053 16 C -0.570 4.570 17 H 0.050 0.950 18 C -0.197 4.197 19 N -0.594 5.594 20 Si 0.774 3.226 21 H -0.194 1.194 22 H -0.213 1.213 23 H -0.161 1.161 24 C -0.048 4.048 25 C -0.162 4.162 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.169 0.831 36 H 0.161 0.839 37 H 0.262 0.738 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.048 0.952 43 H 0.042 0.958 44 H 0.074 0.926 45 H 0.165 0.835 46 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -27.894 -13.516 7.503 31.891 hybrid contribution 0.859 -0.434 -0.275 1.001 sum -27.035 -13.950 7.227 31.269 Atomic orbital electron populations 1.21794 0.95830 1.01927 1.01761 1.21529 0.95936 0.95999 1.02596 1.21573 0.93418 0.97595 1.02347 1.20827 0.96179 0.90670 1.04688 1.20582 0.92202 0.96917 0.92964 1.21480 1.00971 0.94525 0.99362 1.21163 0.92378 0.95029 0.96616 1.30638 1.20866 1.25712 1.00508 1.01007 0.72126 0.74097 0.72353 1.93543 1.82283 1.76651 1.45363 1.93538 1.82007 1.77490 1.44611 1.55277 1.24813 1.78189 1.28827 1.21431 0.93149 0.98657 0.87527 1.21506 0.92492 1.00769 0.99417 1.19529 0.93408 0.96963 0.95408 1.21510 0.94044 1.32401 1.09059 0.95033 1.26087 0.94811 0.97505 1.01346 1.70084 1.04858 1.48172 1.36325 0.85639 0.78895 0.79179 0.78837 1.19380 1.21320 1.16110 1.21145 0.92210 0.94930 0.96493 1.21489 1.00934 0.94539 0.99283 0.92829 0.92949 0.92266 0.91559 0.91394 0.91939 0.92143 0.89514 0.89253 0.83083 0.83888 0.73790 0.90252 0.90311 0.92563 0.91760 0.95194 0.95833 0.92620 0.83477 0.82755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 9.91 71.98 0.71 -0.58 16 2 C -0.12 -0.98 5.93 30.59 0.18 -0.79 16 3 C -0.11 -1.05 5.20 30.59 0.16 -0.89 16 4 C -0.09 -0.84 5.35 29.85 0.16 -0.68 16 5 C -0.03 -0.39 5.13 -19.86 -0.10 -0.50 16 6 C -0.14 -2.44 9.70 22.27 0.22 -2.22 16 7 C -0.03 -0.68 9.52 22.27 0.21 -0.46 16 8 C -0.69 -15.35 5.95 22.27 0.13 -15.22 16 9 S 2.71 69.99 5.74 -56.49 -0.32 69.67 16 10 O -0.99 -31.20 16.75 -128.00 -2.14 -33.35 16 11 O -0.99 -29.06 17.28 -128.00 -2.21 -31.27 16 12 N -1.11 -27.20 6.00 -187.48 -1.12 -28.32 16 13 C 0.12 3.28 6.22 86.38 0.54 3.82 16 14 C -0.10 -3.65 5.29 30.59 0.16 -3.49 16 15 C -0.01 -0.65 4.04 29.85 0.12 -0.53 16 16 C -0.53 -30.09 9.66 25.60 0.25 -29.84 16 17 H 0.03 1.97 7.99 -2.91 -0.02 1.94 16 18 C 0.00 -0.07 5.47 84.65 0.46 0.40 16 19 N -0.95 -59.65 13.96 21.45 0.30 -59.36 16 20 Si 0.95 43.19 27.47 68.60 1.88 45.07 16 21 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 22 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 23 H -0.24 -9.69 6.54 99.48 0.65 -9.03 16 24 C -0.03 -0.55 9.52 22.27 0.21 -0.34 16 25 C -0.14 -2.26 9.70 22.27 0.22 -2.05 16 26 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 33 H 0.09 0.73 8.08 -2.39 -0.02 0.71 16 34 H 0.09 0.70 8.09 -2.39 -0.02 0.68 16 35 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 36 H 0.14 2.82 7.62 -2.91 -0.02 2.79 16 37 H 0.43 9.16 8.65 -96.75 -0.84 8.32 16 38 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 39 H 0.08 2.18 7.75 -2.39 -0.02 2.16 16 40 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 41 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 42 H 0.03 1.25 7.20 -2.39 -0.02 1.24 16 43 H 0.02 1.00 7.57 -2.39 -0.02 0.98 16 44 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 45 H 0.15 2.52 7.62 -2.91 -0.02 2.50 16 46 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 Total: -1.00 -74.30 390.97 0.07 -74.23 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: 0.06 Total: 16.70 kcal Atomic # 6 Polarization: -57.01 SS G_CDS: 3.63 Total: -53.38 kcal Atomic # 7 Polarization: -86.85 SS G_CDS: -0.83 Total: -87.68 kcal Atomic # 8 Polarization: -60.26 SS G_CDS: -4.36 Total: -64.62 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 1.88 Total: 45.07 kcal Atomic # 16 Polarization: 69.99 SS G_CDS: -0.32 Total: 69.67 kcal Total: -74.30 0.07 -74.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191260793.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.870 kcal (2) G-P(sol) polarization free energy of solvation -74.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds