Wall clock time and date at job start Tue Mar 31 2020 14:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46584 * 2 1 4 4 C 1.53006 * 109.47088 * 179.97438 * 3 2 1 5 5 C 1.50698 * 109.47412 * 180.02562 * 4 3 2 6 6 C 1.38233 * 120.00073 * 269.73050 * 5 4 3 7 7 C 1.38234 * 120.00067 * 180.32508 * 6 5 4 8 8 C 1.38231 * 120.00144 * 359.94219 * 7 6 5 9 9 S 1.76202 * 120.00107 * 180.02562 * 8 7 6 10 10 O 1.42096 * 106.40069 * 17.97085 * 9 8 7 11 11 O 1.42097 * 106.40268 * 150.89360 * 9 8 7 12 12 N 1.65599 * 107.21720 * 264.43164 * 9 8 7 13 13 C 1.46500 * 120.00102 * 63.45882 * 12 9 8 14 14 H 1.08997 * 109.46992 * 335.44155 * 13 12 9 15 15 C 1.50691 * 109.47138 * 95.44542 * 13 12 9 16 16 H 1.08009 * 120.00300 * 359.97438 * 15 13 12 17 17 C 1.37879 * 120.00312 * 179.97438 * 15 13 12 18 18 N 1.31521 * 119.99495 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 120.00317 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47332 * 60.00416 * 19 17 15 21 21 H 1.48501 * 109.46958 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.46934 * 299.99693 * 19 17 15 23 23 C 1.53007 * 109.46994 * 215.44339 * 13 12 9 24 24 C 1.52998 * 109.47007 * 65.16472 * 23 13 12 25 25 C 1.38238 * 119.99914 * 0.02884 * 8 7 6 26 26 C 1.38231 * 120.00087 * 89.99778 * 5 4 3 27 27 H 1.08996 * 109.47183 * 299.99381 * 1 2 3 28 28 H 1.09000 * 109.47292 * 60.00339 * 1 2 3 29 29 H 1.09003 * 109.46876 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47183 * 240.00619 * 2 1 3 31 31 H 1.08995 * 109.47317 * 120.00157 * 2 1 3 32 32 H 1.09004 * 109.47487 * 60.00431 * 3 2 1 33 33 H 1.09003 * 109.47744 * 299.99962 * 3 2 1 34 34 H 1.08995 * 109.46743 * 59.99978 * 4 3 2 35 35 H 1.08995 * 109.47153 * 300.00366 * 4 3 2 36 36 H 1.08000 * 120.00270 * 0.26882 * 6 5 4 37 37 H 1.08004 * 120.00058 * 179.97438 * 7 6 5 38 38 H 0.97005 * 119.99934 * 243.45962 * 12 9 8 39 39 H 0.97007 * 119.99578 * 179.97438 * 18 17 15 40 40 H 1.08996 * 109.47047 * 185.16295 * 23 13 12 41 41 H 1.08999 * 109.47332 * 305.16633 * 23 13 12 42 42 H 1.09001 * 109.47527 * 304.39306 * 24 23 13 43 43 H 1.09006 * 109.47149 * 64.39637 * 24 23 13 44 44 H 1.09000 * 109.47111 * 184.38993 * 24 23 13 45 45 H 1.08003 * 120.00271 * 179.97438 * 25 8 7 46 46 H 1.08003 * 120.00159 * 359.72641 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4427 0.0006 5 6 4.0722 2.8635 0.0013 6 6 4.3084 3.5136 -1.1955 7 6 4.7755 4.8146 -1.1949 8 6 5.0054 5.4660 0.0025 9 16 5.6001 7.1245 0.0032 10 8 5.3435 7.6434 -1.2945 11 8 5.1080 7.7268 1.1925 12 7 7.2471 7.0546 0.1616 13 6 8.0569 6.4197 -0.8812 14 1 7.4474 5.6988 -1.4260 15 6 8.5632 7.4716 -1.8341 16 1 8.3069 8.5093 -1.6789 17 6 9.3535 7.1094 -2.9043 18 7 9.6651 5.8457 -3.0936 19 14 9.9804 8.4132 -4.0860 20 1 10.8101 9.3961 -3.3439 21 1 10.8014 7.7696 -5.1429 22 1 8.8277 9.1101 -4.7111 23 6 9.2443 5.7006 -0.2377 24 6 8.7335 4.5490 0.6305 25 6 4.7686 4.8160 1.1993 26 6 4.3020 3.5148 1.1987 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 3.9336 0.9288 -0.8891 35 1 3.9329 0.9290 0.8908 36 1 4.1289 3.0048 -2.1311 37 1 4.9605 5.3225 -2.1300 38 1 7.6756 7.4340 0.9448 39 1 10.2208 5.5908 -3.8468 40 1 9.8962 5.3065 -1.0172 41 1 9.8021 6.4029 0.3818 42 1 8.0210 4.9327 1.3607 43 1 8.2432 3.8078 -0.0008 44 1 9.5724 4.0859 1.1500 45 1 4.9485 5.3247 2.1349 46 1 4.1174 3.0069 2.1338 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191263870.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:11 Heat of formation + Delta-G solvation = -82.698194 kcal Electronic energy + Delta-G solvation = -26003.768439 eV Core-core repulsion = 22405.103424 eV Total energy + Delta-G solvation = -3598.665015 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.34550 -36.59652 -36.03787 -35.86901 -35.14698 -32.53602 -32.14958 -30.89094 -30.60341 -28.76080 -26.60444 -24.58447 -23.05440 -22.70045 -21.67361 -21.05811 -20.17881 -18.94170 -17.54208 -16.89671 -16.26514 -16.06080 -15.42766 -15.34299 -14.93877 -14.39344 -14.32537 -14.27066 -13.67826 -13.44166 -13.17727 -13.08001 -13.02424 -12.94634 -12.72425 -12.00132 -11.87587 -11.62818 -11.59734 -11.47643 -11.42318 -11.31842 -11.18117 -11.09798 -11.03268 -10.92127 -10.76317 -10.75587 -10.38003 -10.18253 -9.82472 -9.79673 -9.67447 -8.95149 -8.86284 -8.41046 -8.21954 -6.05570 -4.11779 0.90930 1.21011 1.47881 3.34229 3.37325 3.42842 3.52893 3.91646 4.37612 4.45099 4.48690 4.61734 4.77901 4.79290 4.97527 4.99241 5.05767 5.22905 5.26030 5.40818 5.43918 5.45637 5.53786 5.55455 5.71018 5.74961 5.85586 5.90290 5.97502 6.08974 6.09926 6.11603 6.16948 6.30222 6.31419 6.35414 6.51407 6.56074 6.78935 6.94279 7.00831 7.11560 7.58608 7.65459 7.90405 8.11257 8.26148 8.91351 9.54151 10.98719 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.015766 B = 0.003425 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.601206 B = 8172.542775 C = 8667.271862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.115 4.115 4 C -0.087 4.087 5 C -0.035 4.035 6 C -0.140 4.140 7 C -0.008 4.008 8 C -0.670 4.670 9 S 2.689 3.311 10 O -0.949 6.949 11 O -0.987 6.987 12 N -1.101 6.101 13 C 0.282 3.718 14 H 0.042 0.958 15 C -0.520 4.520 16 H 0.064 0.936 17 C 0.063 3.937 18 N -0.894 5.894 19 Si 0.896 3.104 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.274 1.274 23 C -0.126 4.126 24 C -0.147 4.147 25 C -0.017 4.017 26 C -0.145 4.145 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.128 0.872 37 H 0.144 0.856 38 H 0.406 0.594 39 H 0.263 0.737 40 H 0.106 0.894 41 H 0.041 0.959 42 H 0.038 0.962 43 H 0.043 0.957 44 H 0.035 0.965 45 H 0.134 0.866 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.587 -11.203 7.527 17.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.153 4.153 4 C -0.124 4.124 5 C -0.035 4.035 6 C -0.159 4.159 7 C -0.027 4.027 8 C -0.756 4.756 9 S 2.777 3.223 10 O -0.939 6.939 11 O -0.978 6.978 12 N -0.862 5.862 13 C 0.178 3.822 14 H 0.059 0.941 15 C -0.559 4.559 16 H 0.082 0.918 17 C -0.139 4.139 18 N -0.533 5.533 19 Si 0.724 3.276 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.200 1.200 23 C -0.166 4.166 24 C -0.205 4.205 25 C -0.037 4.037 26 C -0.164 4.164 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.146 0.854 37 H 0.162 0.838 38 H 0.239 0.761 39 H 0.073 0.927 40 H 0.124 0.876 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.062 0.938 44 H 0.054 0.946 45 H 0.152 0.848 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -12.093 -10.677 7.144 17.643 hybrid contribution 0.702 -0.042 -0.314 0.770 sum -11.391 -10.719 6.830 17.068 Atomic orbital electron populations 1.21778 0.95877 1.01512 1.01918 1.21544 0.95885 0.96721 1.02080 1.21611 0.94066 0.96880 1.02700 1.20729 0.95824 0.92510 1.03322 1.20119 0.94430 0.95592 0.93403 1.21137 1.01810 0.95199 0.97745 1.21054 0.90544 0.93962 0.97181 1.31206 1.17677 1.27516 0.99151 1.01931 0.73150 0.73700 0.73542 1.93595 1.84410 1.75918 1.39986 1.93510 1.80033 1.75248 1.48965 1.55516 1.23719 1.74118 1.32809 1.18537 0.88744 0.91821 0.83142 0.94053 1.21504 1.30777 0.94390 1.09234 0.91799 1.24893 0.95951 0.95542 0.97464 1.69837 1.37822 1.15447 1.30158 0.86576 0.78861 0.81652 0.80498 1.20253 1.21326 1.19983 1.21876 1.00230 0.95514 0.98976 1.21828 0.99623 0.99519 0.99496 1.20821 0.92326 0.94033 0.96481 1.21046 1.02524 0.95184 0.97608 0.92749 0.92696 0.92836 0.91923 0.92002 0.91715 0.91611 0.90564 0.90710 0.85437 0.83825 0.76125 0.92709 0.87606 0.94060 0.94310 0.93809 0.94602 0.84836 0.85688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.16 0.37 -0.66 16 2 C -0.12 -0.88 5.93 -26.73 -0.16 -1.04 16 3 C -0.12 -0.96 5.20 -26.73 -0.14 -1.10 16 4 C -0.09 -0.80 5.35 -27.88 -0.15 -0.95 16 5 C -0.04 -0.44 5.13 -104.63 -0.54 -0.97 16 6 C -0.14 -1.96 9.70 -39.59 -0.38 -2.34 16 7 C -0.01 -0.14 9.20 -39.59 -0.36 -0.50 16 8 C -0.67 -11.51 5.70 -39.58 -0.23 -11.73 16 9 S 2.69 52.66 5.65 -107.50 -0.61 52.05 16 10 O -0.95 -21.91 16.95 -57.17 -0.97 -22.88 16 11 O -0.99 -19.94 17.44 -57.17 -1.00 -20.94 16 12 N -1.10 -21.84 4.84 -5.88 -0.03 -21.87 16 13 C 0.28 6.52 2.16 -69.08 -0.15 6.37 16 14 H 0.04 1.02 7.44 -51.93 -0.39 0.63 16 15 C -0.52 -13.80 8.84 -34.44 -0.30 -14.11 16 16 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 17 C 0.06 1.69 5.29 -17.82 -0.09 1.60 16 18 N -0.89 -24.14 11.29 55.43 0.63 -23.51 16 19 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 23 C -0.13 -2.73 5.37 -26.73 -0.14 -2.87 16 24 C -0.15 -2.68 9.85 37.16 0.37 -2.31 16 25 C -0.02 -0.26 9.52 -39.58 -0.38 -0.64 16 26 C -0.14 -1.85 9.70 -39.59 -0.38 -2.23 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.67 8.08 -51.93 -0.42 0.25 16 35 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 36 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 37 H 0.14 2.50 7.50 -52.48 -0.39 2.11 16 38 H 0.41 7.09 8.84 -34.47 -0.30 6.78 16 39 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 40 H 0.11 2.58 5.95 -51.93 -0.31 2.27 16 41 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.04 0.64 7.64 -51.93 -0.40 0.24 16 43 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.13 1.79 7.75 -52.48 -0.41 1.38 16 46 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 LS Contribution 388.83 15.07 5.86 5.86 Total: -1.00 -31.03 388.83 -11.47 -42.50 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -7.66 Total: 6.12 kcal Atomic # 6 Polarization: -30.82 SS G_CDS: -2.68 Total: -33.50 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: 0.60 Total: -45.38 kcal Atomic # 8 Polarization: -41.85 SS G_CDS: -1.97 Total: -43.82 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 52.66 SS G_CDS: -0.61 Total: 52.05 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.03 -11.47 -42.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191263870.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.196 kcal (2) G-P(sol) polarization free energy of solvation -31.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds