Wall clock time and date at job start Tue Mar 31 2020 14:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46584 * 2 1 4 4 C 1.53006 * 109.47088 * 179.97438 * 3 2 1 5 5 C 1.50698 * 109.47412 * 180.02562 * 4 3 2 6 6 C 1.38233 * 120.00073 * 269.73050 * 5 4 3 7 7 C 1.38234 * 120.00067 * 180.32508 * 6 5 4 8 8 C 1.38231 * 120.00144 * 359.94219 * 7 6 5 9 9 S 1.76202 * 120.00107 * 180.02562 * 8 7 6 10 10 O 1.42096 * 106.40069 * 17.97085 * 9 8 7 11 11 O 1.42097 * 106.40268 * 150.89360 * 9 8 7 12 12 N 1.65599 * 107.21720 * 264.43164 * 9 8 7 13 13 C 1.46500 * 120.00102 * 63.45882 * 12 9 8 14 14 H 1.08997 * 109.46992 * 335.44155 * 13 12 9 15 15 C 1.50691 * 109.47138 * 95.44542 * 13 12 9 16 16 H 1.08009 * 120.00300 * 359.97438 * 15 13 12 17 17 C 1.37879 * 120.00312 * 179.97438 * 15 13 12 18 18 N 1.31521 * 119.99495 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 120.00317 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47332 * 60.00416 * 19 17 15 21 21 H 1.48501 * 109.46958 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.46934 * 299.99693 * 19 17 15 23 23 C 1.53007 * 109.46994 * 215.44339 * 13 12 9 24 24 C 1.52998 * 109.47007 * 65.16472 * 23 13 12 25 25 C 1.38238 * 119.99914 * 0.02884 * 8 7 6 26 26 C 1.38231 * 120.00087 * 89.99778 * 5 4 3 27 27 H 1.08996 * 109.47183 * 299.99381 * 1 2 3 28 28 H 1.09000 * 109.47292 * 60.00339 * 1 2 3 29 29 H 1.09003 * 109.46876 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47183 * 240.00619 * 2 1 3 31 31 H 1.08995 * 109.47317 * 120.00157 * 2 1 3 32 32 H 1.09004 * 109.47487 * 60.00431 * 3 2 1 33 33 H 1.09003 * 109.47744 * 299.99962 * 3 2 1 34 34 H 1.08995 * 109.46743 * 59.99978 * 4 3 2 35 35 H 1.08995 * 109.47153 * 300.00366 * 4 3 2 36 36 H 1.08000 * 120.00270 * 0.26882 * 6 5 4 37 37 H 1.08004 * 120.00058 * 179.97438 * 7 6 5 38 38 H 0.97005 * 119.99934 * 243.45962 * 12 9 8 39 39 H 0.97007 * 119.99578 * 179.97438 * 18 17 15 40 40 H 1.08996 * 109.47047 * 185.16295 * 23 13 12 41 41 H 1.08999 * 109.47332 * 305.16633 * 23 13 12 42 42 H 1.09001 * 109.47527 * 304.39306 * 24 23 13 43 43 H 1.09006 * 109.47149 * 64.39637 * 24 23 13 44 44 H 1.09000 * 109.47111 * 184.38993 * 24 23 13 45 45 H 1.08003 * 120.00271 * 179.97438 * 25 8 7 46 46 H 1.08003 * 120.00159 * 359.72641 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4427 0.0006 5 6 4.0722 2.8635 0.0013 6 6 4.3084 3.5136 -1.1955 7 6 4.7755 4.8146 -1.1949 8 6 5.0054 5.4660 0.0025 9 16 5.6001 7.1245 0.0032 10 8 5.3435 7.6434 -1.2945 11 8 5.1080 7.7268 1.1925 12 7 7.2471 7.0546 0.1616 13 6 8.0569 6.4197 -0.8812 14 1 7.4474 5.6988 -1.4260 15 6 8.5632 7.4716 -1.8341 16 1 8.3069 8.5093 -1.6789 17 6 9.3535 7.1094 -2.9043 18 7 9.6651 5.8457 -3.0936 19 14 9.9804 8.4132 -4.0860 20 1 10.8101 9.3961 -3.3439 21 1 10.8014 7.7696 -5.1429 22 1 8.8277 9.1101 -4.7111 23 6 9.2443 5.7006 -0.2377 24 6 8.7335 4.5490 0.6305 25 6 4.7686 4.8160 1.1993 26 6 4.3020 3.5148 1.1987 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 3.9336 0.9288 -0.8891 35 1 3.9329 0.9290 0.8908 36 1 4.1289 3.0048 -2.1311 37 1 4.9605 5.3225 -2.1300 38 1 7.6756 7.4340 0.9448 39 1 10.2208 5.5908 -3.8468 40 1 9.8962 5.3065 -1.0172 41 1 9.8021 6.4029 0.3818 42 1 8.0210 4.9327 1.3607 43 1 8.2432 3.8078 -0.0008 44 1 9.5724 4.0859 1.1500 45 1 4.9485 5.3247 2.1349 46 1 4.1174 3.0069 2.1338 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191263870.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:10 Heat of formation + Delta-G solvation = -100.947654 kcal Electronic energy + Delta-G solvation = -26004.559795 eV Core-core repulsion = 22405.103424 eV Total energy + Delta-G solvation = -3599.456371 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.42236 -38.25971 -37.67161 -36.84358 -36.68347 -34.13501 -33.40033 -32.22185 -32.01801 -29.60122 -28.51149 -25.40711 -24.86140 -23.84347 -22.52359 -21.91745 -21.79817 -20.43801 -18.99595 -18.70713 -18.01869 -17.25376 -16.81823 -16.42526 -16.29889 -15.78018 -15.46776 -15.29423 -14.98814 -14.85400 -14.66374 -14.49631 -13.87814 -13.80183 -13.74792 -13.58070 -13.34988 -13.13024 -13.02398 -13.01015 -12.84583 -12.70614 -12.60123 -12.37527 -12.20259 -12.08399 -11.93383 -11.92085 -11.66939 -11.56751 -11.49258 -11.38484 -11.35023 -10.43847 -10.08438 -10.00177 -9.96309 -8.09023 -6.21250 -0.47071 -0.13426 0.35034 1.42538 1.44917 1.51848 2.19119 2.46107 2.54424 2.90366 3.17301 3.47818 3.67662 3.81596 3.96862 4.11508 4.15524 4.33148 4.38125 4.39779 4.48740 4.57980 4.62431 4.67933 4.71458 4.82589 4.86995 4.89044 4.91078 4.99454 5.05038 5.13245 5.16615 5.17666 5.24067 5.31816 5.36134 5.36602 5.42126 5.51647 5.56442 5.69241 5.81889 5.91535 6.03266 6.29879 6.47365 6.84775 7.46645 8.92899 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.015766 B = 0.003425 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.601206 B = 8172.542775 C = 8667.271862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.122 4.122 3 C -0.112 4.112 4 C -0.083 4.083 5 C -0.025 4.025 6 C -0.144 4.144 7 C -0.034 4.034 8 C -0.681 4.681 9 S 2.698 3.302 10 O -0.995 6.995 11 O -0.996 6.996 12 N -1.099 6.099 13 C 0.289 3.711 14 H 0.023 0.977 15 C -0.542 4.542 16 H 0.049 0.951 17 C 0.023 3.977 18 N -0.909 5.909 19 Si 0.945 3.055 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.282 1.282 23 C -0.121 4.121 24 C -0.138 4.138 25 C -0.026 4.026 26 C -0.138 4.138 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.146 0.854 37 H 0.122 0.878 38 H 0.416 0.584 39 H 0.264 0.736 40 H 0.078 0.922 41 H 0.045 0.955 42 H 0.055 0.945 43 H 0.036 0.964 44 H 0.056 0.944 45 H 0.148 0.852 46 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.145 -13.444 9.148 20.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.159 4.159 3 C -0.150 4.150 4 C -0.121 4.121 5 C -0.025 4.025 6 C -0.163 4.163 7 C -0.053 4.053 8 C -0.771 4.771 9 S 2.791 3.209 10 O -0.985 6.985 11 O -0.986 6.986 12 N -0.859 5.859 13 C 0.183 3.817 14 H 0.041 0.959 15 C -0.582 4.582 16 H 0.067 0.933 17 C -0.177 4.177 18 N -0.548 5.548 19 Si 0.771 3.229 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.208 1.208 23 C -0.161 4.161 24 C -0.195 4.195 25 C -0.045 4.045 26 C -0.157 4.157 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.102 0.898 35 H 0.112 0.888 36 H 0.164 0.836 37 H 0.140 0.860 38 H 0.251 0.749 39 H 0.074 0.926 40 H 0.096 0.904 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.055 0.945 44 H 0.075 0.925 45 H 0.166 0.834 46 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -12.627 -12.865 8.779 20.051 hybrid contribution 0.777 0.569 -0.792 1.247 sum -11.849 -12.296 7.987 18.852 Atomic orbital electron populations 1.21793 0.95778 1.01957 1.01735 1.21522 0.95960 0.95805 1.02650 1.21583 0.93323 0.97754 1.02325 1.20810 0.96258 0.90272 1.04711 1.20545 0.92401 0.97006 0.92591 1.21390 1.01213 0.94088 0.99608 1.21027 0.92520 0.95467 0.96332 1.30617 1.20080 1.25798 1.00565 1.01242 0.72746 0.74568 0.72341 1.93532 1.84908 1.77983 1.42101 1.93485 1.79958 1.76358 1.48799 1.55274 1.23802 1.74327 1.32540 1.18257 0.89165 0.90808 0.83433 0.95883 1.21823 1.31146 0.94563 1.10634 0.93309 1.25504 0.96293 0.97198 0.98729 1.69932 1.38051 1.16353 1.30464 0.85822 0.78185 0.79861 0.79063 1.19494 1.20308 1.20826 1.21707 0.99024 0.96666 0.98701 1.21716 1.00667 0.97960 0.99154 1.21111 0.92324 0.95119 0.95934 1.21477 1.00733 0.94197 0.99285 0.92735 0.93131 0.92113 0.91667 0.91119 0.91707 0.92485 0.89805 0.88783 0.83605 0.86007 0.74935 0.92634 0.90407 0.93645 0.92566 0.94495 0.92453 0.83385 0.81998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 9.91 71.98 0.71 -1.01 16 2 C -0.12 -1.36 5.93 30.60 0.18 -1.18 16 3 C -0.11 -1.54 5.20 30.60 0.16 -1.38 16 4 C -0.08 -1.24 5.35 29.85 0.16 -1.08 16 5 C -0.03 -0.55 5.13 -19.87 -0.10 -0.65 16 6 C -0.14 -3.88 9.70 22.27 0.22 -3.66 16 7 C -0.03 -1.16 9.20 22.27 0.20 -0.96 16 8 C -0.68 -23.41 5.70 22.27 0.13 -23.29 16 9 S 2.70 108.61 5.65 -56.49 -0.32 108.29 16 10 O -1.00 -48.45 16.95 -128.00 -2.17 -50.61 16 11 O -1.00 -40.42 17.44 -128.00 -2.23 -42.65 16 12 N -1.10 -44.36 4.84 -172.53 -0.83 -45.19 16 13 C 0.29 13.69 2.16 44.24 0.10 13.79 16 14 H 0.02 1.19 7.44 -2.39 -0.02 1.17 16 15 C -0.54 -29.67 8.84 25.60 0.23 -29.45 16 16 H 0.05 2.74 7.81 -2.91 -0.02 2.72 16 17 C 0.02 1.24 5.29 84.65 0.45 1.69 16 18 N -0.91 -49.95 11.29 21.45 0.24 -49.71 16 19 Si 0.94 44.02 29.54 68.60 2.03 46.05 16 20 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 21 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 22 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 23 C -0.12 -5.24 5.37 30.60 0.16 -5.07 16 24 C -0.14 -4.78 9.85 71.98 0.71 -4.07 16 25 C -0.03 -0.71 9.52 22.27 0.21 -0.50 16 26 C -0.14 -3.06 9.70 22.27 0.22 -2.84 16 27 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.69 16 31 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.08 1.17 8.08 -2.39 -0.02 1.15 16 35 H 0.09 1.10 8.08 -2.39 -0.02 1.08 16 36 H 0.15 3.26 8.06 -2.91 -0.02 3.23 16 37 H 0.12 4.59 7.50 -2.91 -0.02 4.56 16 38 H 0.42 14.58 8.84 -96.74 -0.86 13.73 16 39 H 0.26 13.89 8.31 -92.70 -0.77 13.12 16 40 H 0.08 3.85 5.95 -2.39 -0.01 3.83 16 41 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.06 1.74 7.64 -2.39 -0.02 1.72 16 43 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 44 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.15 3.61 7.75 -2.91 -0.02 3.59 16 46 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -68.01 388.83 0.54 -67.47 By element: Atomic # 1 Polarization: 25.94 SS G_CDS: 0.10 Total: 26.04 kcal Atomic # 6 Polarization: -63.40 SS G_CDS: 3.73 Total: -59.67 kcal Atomic # 7 Polarization: -94.31 SS G_CDS: -0.59 Total: -94.90 kcal Atomic # 8 Polarization: -88.86 SS G_CDS: -4.40 Total: -93.26 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 16 Polarization: 108.61 SS G_CDS: -0.32 Total: 108.29 kcal Total: -68.01 0.54 -67.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191263870.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.482 kcal (2) G-P(sol) polarization free energy of solvation -68.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds