Wall clock time and date at job start Tue Mar 31 2020 14:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47317 * 2 1 4 4 O 1.42900 * 109.47331 * 239.99948 * 2 1 3 5 5 C 1.50694 * 109.47368 * 119.99842 * 2 1 3 6 6 C 1.38365 * 119.85892 * 149.99734 * 5 2 1 7 7 C 1.37950 * 120.15149 * 180.02562 * 6 5 2 8 8 C 1.39586 * 119.85191 * 359.97438 * 7 6 5 9 9 C 1.47811 * 120.14527 * 179.97438 * 8 7 6 10 10 O 1.21558 * 119.99941 * 359.71898 * 9 8 7 11 11 N 1.34786 * 119.99580 * 179.97438 * 9 8 7 12 12 C 1.39861 * 119.99575 * 174.58636 * 11 9 8 13 13 C 1.39305 * 119.94867 * 146.34836 * 12 11 9 14 14 C 1.38486 * 120.42941 * 179.97438 * 13 12 11 15 15 C 1.37688 * 120.31991 * 359.97438 * 14 13 12 16 16 C 1.40739 * 119.88899 * 0.02562 * 15 14 13 17 17 C 1.41418 * 120.20732 * 180.02562 * 16 15 14 18 18 H 1.07994 * 119.99911 * 151.79212 * 17 16 15 19 19 C 1.39931 * 119.99787 * 331.78900 * 17 16 15 20 20 N 1.30830 * 120.00017 * 348.98663 * 19 17 16 21 21 Si 1.86801 * 119.99948 * 168.99486 * 19 17 16 22 22 H 1.48494 * 109.47089 * 89.99850 * 21 19 17 23 23 H 1.48504 * 109.47026 * 210.00039 * 21 19 17 24 24 H 1.48503 * 109.46929 * 329.99735 * 21 19 17 25 25 C 1.38263 * 119.95032 * 326.07352 * 12 11 9 26 26 C 1.39591 * 119.70676 * 0.24892 * 8 7 6 27 27 C 1.37956 * 119.85533 * 359.51656 * 26 8 7 28 28 H 1.09002 * 109.47338 * 300.00071 * 1 2 3 29 29 H 1.09004 * 109.46765 * 60.00175 * 1 2 3 30 30 H 1.09001 * 109.47338 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47385 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47204 * 300.00104 * 3 2 1 33 33 H 1.09002 * 109.46975 * 59.99707 * 3 2 1 34 34 H 0.96703 * 114.00321 * 300.00464 * 4 2 1 35 35 H 1.08006 * 119.91995 * 0.02562 * 6 5 2 36 36 H 1.08003 * 120.07264 * 179.97438 * 7 6 5 37 37 H 0.96995 * 120.00388 * 354.58322 * 11 9 8 38 38 H 1.08006 * 119.78796 * 359.97438 * 13 12 11 39 39 H 1.07994 * 119.83740 * 179.97438 * 14 13 12 40 40 H 1.07995 * 120.05436 * 180.02562 * 15 14 13 41 41 H 0.97003 * 119.99829 * 179.97438 * 20 19 17 42 42 H 1.08006 * 120.16032 * 0.02562 * 25 12 11 43 43 H 1.08001 * 120.07343 * 179.75139 * 26 8 7 44 44 H 1.07993 * 119.93357 * 180.22791 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0323 -0.7103 1.2304 6 6 3.2417 -1.3815 1.1928 7 6 3.7071 -2.0342 2.3155 8 6 2.9552 -2.0161 3.4914 9 6 3.4474 -2.7138 4.6980 10 8 4.5067 -3.3093 4.6661 11 7 2.7192 -2.6940 5.8320 12 6 3.1272 -3.4463 6.9382 13 6 2.8926 -2.9718 8.2268 14 6 3.2919 -3.7088 9.3292 15 6 3.9252 -4.9200 9.1632 16 6 4.1690 -5.4123 7.8674 17 6 4.8185 -6.6557 7.6892 18 1 4.6198 -7.2473 6.8078 19 6 5.7188 -7.1196 8.6548 20 7 6.1250 -6.3206 9.6078 21 14 6.3407 -8.8796 8.5830 22 1 7.5772 -8.9345 7.7625 23 1 6.6373 -9.3562 9.9579 24 1 5.3020 -9.7471 7.9717 25 6 3.7576 -4.6626 6.7513 26 6 1.7337 -1.3411 3.5212 27 6 1.2821 -0.6883 2.3929 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.7210 -1.5952 -1.2330 35 1 3.8226 -1.3943 0.2824 36 1 4.6511 -2.5581 2.2846 37 1 1.9123 -2.1580 5.8810 38 1 2.3961 -2.0229 8.3670 39 1 3.1056 -3.3316 10.3238 40 1 4.2344 -5.4914 10.0259 41 1 6.7488 -6.6423 10.2774 42 1 3.9364 -5.0333 5.7527 43 1 1.1453 -1.3267 4.4267 44 1 0.3391 -0.1626 2.4156 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192578875.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:34 Heat of formation + Delta-G solvation = -43.396789 kcal Electronic energy + Delta-G solvation = -26016.411856 eV Core-core repulsion = 22284.007127 eV Total energy + Delta-G solvation = -3732.404729 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.50045 -39.41611 -37.55983 -36.81026 -34.51705 -33.24727 -33.01363 -31.19285 -30.26389 -29.81082 -27.99187 -27.75005 -25.30751 -24.37516 -22.69460 -21.82405 -20.92359 -20.52680 -19.61151 -18.30587 -17.60354 -17.23006 -15.78933 -15.62557 -15.38504 -15.17118 -14.92031 -14.71562 -14.54022 -14.42461 -14.04830 -13.73779 -13.22047 -13.00684 -12.93472 -12.83399 -12.59740 -12.56555 -12.30515 -12.10528 -12.01618 -11.68878 -11.39365 -11.30860 -11.09537 -11.04125 -10.66828 -10.50089 -10.43191 -10.14047 -9.75318 -9.52290 -9.17443 -9.16230 -8.95860 -8.88995 -7.41785 -6.89809 -6.65400 -4.33694 0.70149 1.20061 2.65639 2.85111 3.10934 3.15494 3.18043 3.26000 3.55539 3.80674 3.89339 3.99548 4.18829 4.46672 4.64761 4.68643 4.71189 4.77253 4.94549 5.16120 5.22449 5.28990 5.35442 5.43391 5.49090 5.64537 5.68493 5.72183 5.82285 5.83571 6.10639 6.21579 6.27498 6.28227 6.37530 6.68042 6.75023 7.01490 7.04198 7.08457 7.26849 7.28067 7.55365 7.72244 7.96584 8.09557 8.15803 8.26831 8.62381 8.71827 8.95580 8.98908 10.28067 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.023189 B = 0.002383 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.183785 B =11748.839914 C =12560.352647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.168 3.832 3 C -0.136 4.136 4 O -0.555 6.555 5 C -0.103 4.103 6 C -0.111 4.111 7 C -0.061 4.061 8 C -0.120 4.120 9 C 0.543 3.457 10 O -0.509 6.509 11 N -0.662 5.662 12 C 0.149 3.851 13 C -0.258 4.258 14 C -0.094 4.094 15 C -0.167 4.167 16 C 0.118 3.882 17 C -0.457 4.457 18 H 0.076 0.924 19 C 0.073 3.927 20 N -0.801 5.801 21 Si 0.911 3.089 22 H -0.270 1.270 23 H -0.277 1.277 24 H -0.262 1.262 25 C -0.207 4.207 26 C -0.089 4.089 27 C -0.120 4.120 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.379 0.621 35 H 0.134 0.866 36 H 0.139 0.861 37 H 0.397 0.603 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.122 0.878 41 H 0.279 0.721 42 H 0.106 0.894 43 H 0.128 0.872 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.070 12.056 -15.090 22.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.127 3.873 3 C -0.193 4.193 4 O -0.361 6.361 5 C -0.103 4.103 6 C -0.129 4.129 7 C -0.080 4.080 8 C -0.123 4.123 9 C 0.331 3.669 10 O -0.384 6.384 11 N -0.306 5.306 12 C 0.057 3.943 13 C -0.280 4.280 14 C -0.113 4.113 15 C -0.186 4.186 16 C 0.115 3.885 17 C -0.487 4.487 18 H 0.094 0.906 19 C -0.144 4.144 20 N -0.427 5.427 21 Si 0.736 3.264 22 H -0.195 1.195 23 H -0.202 1.202 24 H -0.186 1.186 25 C -0.228 4.228 26 C -0.108 4.108 27 C -0.138 4.138 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.227 0.773 35 H 0.152 0.848 36 H 0.156 0.844 37 H 0.232 0.768 38 H 0.107 0.893 39 H 0.110 0.890 40 H 0.140 0.860 41 H 0.090 0.910 42 H 0.124 0.876 43 H 0.145 0.855 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.873 12.207 -15.047 21.746 hybrid contribution -0.291 -0.927 0.321 1.023 sum -10.164 11.279 -14.726 21.152 Atomic orbital electron populations 1.22557 0.95016 1.02946 1.03065 1.20014 0.92608 0.92500 0.82148 1.21759 1.02365 0.92575 1.02565 1.86548 1.77253 1.29282 1.43037 1.20697 0.95397 0.98284 0.95940 1.20989 0.95676 0.97575 0.98697 1.21349 0.99471 0.96165 0.90995 1.20151 0.96230 1.01048 0.94895 1.18299 0.84452 0.81169 0.83028 1.90847 1.21456 1.42498 1.83587 1.43360 1.27297 1.47508 1.12456 1.17419 1.00759 0.91337 0.84778 1.20057 1.15091 1.01636 0.91171 1.20484 0.99162 0.95755 0.95905 1.21417 1.02290 0.96785 0.98145 1.17511 0.88499 0.91965 0.90504 1.19539 1.20995 1.03001 1.05166 0.90558 1.25887 0.95224 0.99131 0.94110 1.69803 1.25254 1.35680 1.11960 0.86264 0.79684 0.82194 0.78264 1.19511 1.20170 1.18565 1.20989 1.09164 0.93956 0.98698 1.21332 0.94901 0.95971 0.98585 1.20992 1.00106 1.00378 0.92344 0.91042 0.91409 0.91892 0.91579 0.91505 0.90926 0.77315 0.84812 0.84362 0.76826 0.89275 0.88958 0.86018 0.91013 0.87558 0.85463 0.85250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.05 8.12 37.15 0.30 -0.74 16 2 C 0.17 1.27 1.23 -91.78 -0.11 1.16 16 3 C -0.14 -0.98 8.82 37.16 0.33 -0.65 16 4 O -0.55 -4.49 11.95 -35.23 -0.42 -4.91 16 5 C -0.10 -0.95 4.82 -104.53 -0.50 -1.45 16 6 C -0.11 -1.18 9.33 -39.64 -0.37 -1.55 16 7 C -0.06 -0.81 9.60 -39.18 -0.38 -1.19 16 8 C -0.12 -1.72 5.87 -104.97 -0.62 -2.33 16 9 C 0.54 10.25 7.50 -12.34 -0.09 10.16 16 10 O -0.51 -11.90 14.06 5.32 0.07 -11.83 16 11 N -0.66 -12.12 5.28 -10.77 -0.06 -12.18 16 12 C 0.15 3.41 6.26 -83.79 -0.52 2.89 16 13 C -0.26 -5.72 9.97 -39.09 -0.39 -6.11 16 14 C -0.09 -2.21 10.02 -39.69 -0.40 -2.60 16 15 C -0.17 -4.41 8.66 -38.84 -0.34 -4.74 16 16 C 0.12 3.28 5.55 -106.85 -0.59 2.69 16 17 C -0.46 -12.67 9.06 -37.74 -0.34 -13.01 16 18 H 0.08 2.05 7.87 -52.49 -0.41 1.64 16 19 C 0.07 1.90 5.25 -17.34 -0.09 1.81 16 20 N -0.80 -21.37 10.81 55.55 0.60 -20.77 16 21 Si 0.91 19.38 29.57 -169.99 -5.03 14.36 16 22 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 23 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 24 H -0.26 -5.49 7.11 56.52 0.40 -5.08 16 25 C -0.21 -5.43 8.39 -38.68 -0.32 -5.75 16 26 C -0.09 -0.98 9.54 -39.18 -0.37 -1.35 16 27 C -0.12 -1.09 9.12 -39.64 -0.36 -1.45 16 28 H 0.07 0.36 6.50 -51.93 -0.34 0.02 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.38 2.02 9.04 45.56 0.41 2.43 16 35 H 0.13 1.26 7.47 -52.48 -0.39 0.87 16 36 H 0.14 1.93 7.65 -52.48 -0.40 1.53 16 37 H 0.40 5.57 6.87 -40.82 -0.28 5.29 16 38 H 0.09 1.69 8.06 -52.48 -0.42 1.27 16 39 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 40 H 0.12 3.30 6.18 -52.49 -0.32 2.97 16 41 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 42 H 0.11 2.88 6.44 -52.48 -0.34 2.54 16 43 H 0.13 1.14 6.42 -52.49 -0.34 0.80 16 44 H 0.13 0.84 6.14 -52.49 -0.32 0.52 16 LS Contribution 365.82 15.07 5.51 5.51 Total: -1.00 -32.58 365.82 -9.32 -41.91 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -4.83 Total: 12.15 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: -5.18 Total: -24.24 kcal Atomic # 7 Polarization: -33.49 SS G_CDS: 0.54 Total: -32.95 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.35 Total: -16.74 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.03 Total: 14.36 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.58 -9.32 -41.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192578875.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.491 kcal (2) G-P(sol) polarization free energy of solvation -32.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds