Wall clock time and date at job start Tue Mar 31 2020 14:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47317 * 2 1 4 4 O 1.42900 * 109.47331 * 239.99948 * 2 1 3 5 5 C 1.50694 * 109.47368 * 119.99842 * 2 1 3 6 6 C 1.38365 * 119.85892 * 149.99734 * 5 2 1 7 7 C 1.37950 * 120.15149 * 180.02562 * 6 5 2 8 8 C 1.39586 * 119.85191 * 359.97438 * 7 6 5 9 9 C 1.47811 * 120.14527 * 179.97438 * 8 7 6 10 10 O 1.21558 * 119.99941 * 359.71898 * 9 8 7 11 11 N 1.34786 * 119.99580 * 179.97438 * 9 8 7 12 12 C 1.39861 * 119.99575 * 174.58636 * 11 9 8 13 13 C 1.39305 * 119.94867 * 146.34836 * 12 11 9 14 14 C 1.38486 * 120.42941 * 179.97438 * 13 12 11 15 15 C 1.37688 * 120.31991 * 359.97438 * 14 13 12 16 16 C 1.40739 * 119.88899 * 0.02562 * 15 14 13 17 17 C 1.41418 * 120.20732 * 180.02562 * 16 15 14 18 18 H 1.07994 * 119.99911 * 151.79212 * 17 16 15 19 19 C 1.39931 * 119.99787 * 331.78900 * 17 16 15 20 20 N 1.30830 * 120.00017 * 348.98663 * 19 17 16 21 21 Si 1.86801 * 119.99948 * 168.99486 * 19 17 16 22 22 H 1.48494 * 109.47089 * 89.99850 * 21 19 17 23 23 H 1.48504 * 109.47026 * 210.00039 * 21 19 17 24 24 H 1.48503 * 109.46929 * 329.99735 * 21 19 17 25 25 C 1.38263 * 119.95032 * 326.07352 * 12 11 9 26 26 C 1.39591 * 119.70676 * 0.24892 * 8 7 6 27 27 C 1.37956 * 119.85533 * 359.51656 * 26 8 7 28 28 H 1.09002 * 109.47338 * 300.00071 * 1 2 3 29 29 H 1.09004 * 109.46765 * 60.00175 * 1 2 3 30 30 H 1.09001 * 109.47338 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47385 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47204 * 300.00104 * 3 2 1 33 33 H 1.09002 * 109.46975 * 59.99707 * 3 2 1 34 34 H 0.96703 * 114.00321 * 300.00464 * 4 2 1 35 35 H 1.08006 * 119.91995 * 0.02562 * 6 5 2 36 36 H 1.08003 * 120.07264 * 179.97438 * 7 6 5 37 37 H 0.96995 * 120.00388 * 354.58322 * 11 9 8 38 38 H 1.08006 * 119.78796 * 359.97438 * 13 12 11 39 39 H 1.07994 * 119.83740 * 179.97438 * 14 13 12 40 40 H 1.07995 * 120.05436 * 180.02562 * 15 14 13 41 41 H 0.97003 * 119.99829 * 179.97438 * 20 19 17 42 42 H 1.08006 * 120.16032 * 0.02562 * 25 12 11 43 43 H 1.08001 * 120.07343 * 179.75139 * 26 8 7 44 44 H 1.07993 * 119.93357 * 180.22791 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0323 -0.7103 1.2304 6 6 3.2417 -1.3815 1.1928 7 6 3.7071 -2.0342 2.3155 8 6 2.9552 -2.0161 3.4914 9 6 3.4474 -2.7138 4.6980 10 8 4.5067 -3.3093 4.6661 11 7 2.7192 -2.6940 5.8320 12 6 3.1272 -3.4463 6.9382 13 6 2.8926 -2.9718 8.2268 14 6 3.2919 -3.7088 9.3292 15 6 3.9252 -4.9200 9.1632 16 6 4.1690 -5.4123 7.8674 17 6 4.8185 -6.6557 7.6892 18 1 4.6198 -7.2473 6.8078 19 6 5.7188 -7.1196 8.6548 20 7 6.1250 -6.3206 9.6078 21 14 6.3407 -8.8796 8.5830 22 1 7.5772 -8.9345 7.7625 23 1 6.6373 -9.3562 9.9579 24 1 5.3020 -9.7471 7.9717 25 6 3.7576 -4.6626 6.7513 26 6 1.7337 -1.3411 3.5212 27 6 1.2821 -0.6883 2.3929 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.7210 -1.5952 -1.2330 35 1 3.8226 -1.3943 0.2824 36 1 4.6511 -2.5581 2.2846 37 1 1.9123 -2.1580 5.8810 38 1 2.3961 -2.0229 8.3670 39 1 3.1056 -3.3316 10.3238 40 1 4.2344 -5.4914 10.0259 41 1 6.7488 -6.6423 10.2774 42 1 3.9364 -5.0333 5.7527 43 1 1.1453 -1.3267 4.4267 44 1 0.3391 -0.1626 2.4156 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192578875.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:33 Heat of formation + Delta-G solvation = -64.301665 kcal Electronic energy + Delta-G solvation = -26017.318360 eV Core-core repulsion = 22284.007127 eV Total energy + Delta-G solvation = -3733.311233 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.69300 -40.56314 -39.07029 -37.92622 -36.29725 -34.92519 -33.85901 -32.16583 -31.77651 -31.19926 -29.63484 -28.23962 -27.29171 -25.49571 -23.59154 -23.27289 -22.72722 -21.66797 -20.89000 -19.75100 -18.96231 -18.30357 -17.47521 -17.04082 -16.50663 -16.36971 -16.20719 -16.11591 -15.77637 -15.49498 -15.23038 -14.90982 -14.71476 -14.49680 -14.08728 -13.91676 -13.63677 -13.52020 -13.29697 -13.15440 -13.10024 -12.89774 -12.84951 -12.61412 -12.59393 -12.23711 -12.14305 -12.01958 -11.70510 -11.61312 -11.31189 -11.07430 -10.97026 -10.69430 -10.02898 -9.89431 -9.39408 -8.75693 -8.59947 -6.40844 -0.31120 0.33969 0.90134 0.98594 1.34720 1.46121 1.50300 1.84915 2.10549 2.21092 2.70349 2.80754 3.27979 3.44819 3.69477 3.71480 3.82157 3.92463 4.07076 4.17152 4.36575 4.43801 4.44421 4.59099 4.67356 4.76992 4.87815 4.88645 4.98390 4.99498 5.03651 5.07299 5.09205 5.16544 5.18176 5.28556 5.30640 5.34217 5.37202 5.48904 5.72357 5.81585 5.83933 6.04813 6.08677 6.31909 6.56159 6.66407 6.80332 6.91585 6.97653 7.21611 8.35450 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.023189 B = 0.002383 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.183785 B =11748.839914 C =12560.352647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.168 3.832 3 C -0.139 4.139 4 O -0.569 6.569 5 C -0.088 4.088 6 C -0.112 4.112 7 C -0.077 4.077 8 C -0.145 4.145 9 C 0.541 3.459 10 O -0.567 6.567 11 N -0.650 5.650 12 C 0.154 3.846 13 C -0.245 4.245 14 C -0.092 4.092 15 C -0.192 4.192 16 C 0.086 3.914 17 C -0.501 4.501 18 H 0.065 0.935 19 C 0.031 3.969 20 N -0.831 5.831 21 Si 0.986 3.014 22 H -0.267 1.267 23 H -0.259 1.259 24 H -0.259 1.259 25 C -0.234 4.234 26 C -0.080 4.080 27 C -0.110 4.110 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.390 0.610 35 H 0.142 0.858 36 H 0.115 0.885 37 H 0.421 0.579 38 H 0.135 0.865 39 H 0.126 0.874 40 H 0.108 0.892 41 H 0.288 0.712 42 H 0.082 0.918 43 H 0.152 0.848 44 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.717 14.321 -15.644 25.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.127 3.873 3 C -0.196 4.196 4 O -0.377 6.377 5 C -0.089 4.089 6 C -0.129 4.129 7 C -0.096 4.096 8 C -0.148 4.148 9 C 0.331 3.669 10 O -0.446 6.446 11 N -0.296 5.296 12 C 0.061 3.939 13 C -0.266 4.266 14 C -0.111 4.111 15 C -0.211 4.211 16 C 0.084 3.916 17 C -0.531 4.531 18 H 0.083 0.917 19 C -0.182 4.182 20 N -0.458 5.458 21 Si 0.806 3.194 22 H -0.192 1.192 23 H -0.183 1.183 24 H -0.183 1.183 25 C -0.256 4.256 26 C -0.098 4.098 27 C -0.128 4.128 28 H 0.105 0.895 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.105 0.895 34 H 0.239 0.761 35 H 0.160 0.840 36 H 0.134 0.866 37 H 0.260 0.740 38 H 0.153 0.847 39 H 0.144 0.856 40 H 0.126 0.874 41 H 0.098 0.902 42 H 0.101 0.899 43 H 0.170 0.830 44 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -12.575 14.513 -15.611 24.747 hybrid contribution 0.435 -1.428 0.349 1.533 sum -12.139 13.085 -15.261 23.484 Atomic orbital electron populations 1.22547 0.93087 1.03535 1.04145 1.20134 0.93945 0.92246 0.80971 1.21820 1.01560 0.92547 1.03680 1.86536 1.77700 1.30310 1.43159 1.21039 0.94246 0.96548 0.97018 1.21045 0.96562 0.97406 0.97934 1.21289 0.99099 0.97195 0.92035 1.19837 0.98490 1.03489 0.92996 1.19081 0.83565 0.80167 0.84053 1.90819 1.24183 1.45100 1.84535 1.43209 1.28101 1.47031 1.11235 1.17512 0.99153 0.90416 0.86812 1.20514 1.13416 1.02681 0.89988 1.20877 0.97560 0.94494 0.98150 1.21388 1.04246 0.98476 0.97034 1.17860 0.89392 0.92703 0.91675 1.19749 1.23180 1.04075 1.06128 0.91719 1.26750 0.94705 1.03523 0.93232 1.69851 1.25766 1.37561 1.12595 0.85160 0.78855 0.76336 0.79027 1.19175 1.18258 1.18310 1.20943 1.11445 0.95915 0.97289 1.21580 0.93270 0.94659 1.00340 1.21383 1.01063 0.99263 0.91056 0.89499 0.90881 0.91554 0.92976 0.90762 0.89532 0.76063 0.84011 0.86647 0.73997 0.84701 0.85576 0.87436 0.90156 0.89949 0.83046 0.81471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.31 8.12 71.98 0.58 -0.73 16 2 C 0.17 2.00 1.23 -11.54 -0.01 1.98 16 3 C -0.14 -1.60 8.82 71.98 0.64 -0.96 16 4 O -0.57 -7.89 11.95 -148.98 -1.78 -9.67 16 5 C -0.09 -1.37 4.82 -19.80 -0.10 -1.47 16 6 C -0.11 -2.28 9.33 22.23 0.21 -2.07 16 7 C -0.08 -2.11 9.60 22.53 0.22 -1.90 16 8 C -0.14 -4.12 5.87 -20.09 -0.12 -4.24 16 9 C 0.54 21.01 7.50 86.77 0.65 21.66 16 10 O -0.57 -28.47 14.06 -3.90 -0.05 -28.52 16 11 N -0.65 -23.35 5.28 -306.26 -1.62 -24.96 16 12 C 0.15 7.09 6.26 38.12 0.24 7.33 16 13 C -0.25 -10.34 9.97 22.59 0.23 -10.11 16 14 C -0.09 -4.23 10.02 22.20 0.22 -4.00 16 15 C -0.19 -10.45 8.66 22.75 0.20 -10.26 16 16 C 0.09 5.08 5.55 -21.31 -0.12 4.96 16 17 C -0.50 -29.66 9.06 23.46 0.21 -29.44 16 18 H 0.06 3.79 7.87 -2.91 -0.02 3.76 16 19 C 0.03 1.70 5.25 85.25 0.45 2.14 16 20 N -0.83 -45.95 10.81 21.82 0.24 -45.72 16 21 Si 0.99 41.07 29.57 68.60 2.03 43.10 16 22 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 23 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 24 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 25 C -0.23 -13.00 8.39 22.85 0.19 -12.81 16 26 C -0.08 -1.52 9.54 22.53 0.21 -1.30 16 27 C -0.11 -1.54 9.12 22.23 0.20 -1.33 16 28 H 0.09 0.39 6.50 -2.39 -0.02 0.37 16 29 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 30 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.39 3.32 9.04 -74.06 -0.67 2.65 16 35 H 0.14 2.61 7.47 -2.91 -0.02 2.59 16 36 H 0.12 3.60 7.65 -2.91 -0.02 3.57 16 37 H 0.42 10.66 6.87 -92.71 -0.64 10.02 16 38 H 0.14 4.46 8.06 -2.91 -0.02 4.44 16 39 H 0.13 4.86 8.06 -2.91 -0.02 4.84 16 40 H 0.11 6.08 6.18 -2.91 -0.02 6.06 16 41 H 0.29 14.29 8.30 -92.71 -0.77 13.52 16 42 H 0.08 4.86 6.44 -2.91 -0.02 4.84 16 43 H 0.15 2.06 6.42 -2.91 -0.02 2.04 16 44 H 0.17 1.15 6.14 -2.91 -0.02 1.13 16 Total: -1.00 -77.27 365.82 2.66 -74.61 By element: Atomic # 1 Polarization: 33.96 SS G_CDS: -0.25 Total: 33.71 kcal Atomic # 6 Polarization: -46.64 SS G_CDS: 4.10 Total: -42.54 kcal Atomic # 7 Polarization: -69.30 SS G_CDS: -1.38 Total: -70.68 kcal Atomic # 8 Polarization: -36.36 SS G_CDS: -1.84 Total: -38.20 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.10 kcal Total: -77.27 2.66 -74.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192578875.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.310 kcal (2) G-P(sol) polarization free energy of solvation -77.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds